mRNA_P-fluviatile_contig80.14726.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14726.1
Unique NamemRNA_P-fluviatile_contig80.14726.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:131510..132232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size723
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14726.1prot_P-fluviatile_contig80.14726.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 131745..132143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.8545654-UTR-P-fluviatile_contig80:131509..1317441622817267.8545654-UTR-P-fluviatile_contig80:131509..131744Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 131510..131744 +
1693571848.4129062-UTR-P-fluviatile_contig80:131509..1317441693571848.4129062-UTR-P-fluviatile_contig80:131509..131744Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 131510..131744 +
1622817267.8851838-UTR-P-fluviatile_contig80:132143..1322321622817267.8851838-UTR-P-fluviatile_contig80:132143..132232Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 132144..132232 +
1693571848.438138-UTR-P-fluviatile_contig80:132143..1322321693571848.438138-UTR-P-fluviatile_contig80:132143..132232Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 132144..132232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.8663063-CDS-P-fluviatile_contig80:131744..1321431622817267.8663063-CDS-P-fluviatile_contig80:131744..132143Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 131745..132143 +
1693571848.423439-CDS-P-fluviatile_contig80:131744..1321431693571848.423439-CDS-P-fluviatile_contig80:131744..132143Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 131745..132143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14726.1

>prot_P-fluviatile_contig80.14726.1 ID=prot_P-fluviatile_contig80.14726.1|Name=mRNA_P-fluviatile_contig80.14726.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=133bp
MVCGIARLTDVRASFALDMGGRTLHFSALTPICAHAQSPGVFLWGAIQSS
PSCGSFAMIGYVESRALPSKCCGWLSWLRGLEKGARRVLLPLCKRKLPQI
TALSLSADKVASEQSAPSHCICRQYAIPHVSL*
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mRNA from alignment at P-fluviatile_contig80:131510..132232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14726.1 ID=mRNA_P-fluviatile_contig80.14726.1|Name=mRNA_P-fluviatile_contig80.14726.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=723bp|location=Sequence derived from alignment at P-fluviatile_contig80:131510..132232+ (Porterinema fluviatile SAG_2381)
TGACGAGGGCGTAGAAAGTGAGGCAAGCGTTGAGGCAAGAGGGGCTCGGG
AAGGTTCAAGCTTTCAGGTATTTCGTAATCTTCGGCGGGTAAGTTTGGGT
GGCAATATTTGGACAACAATGGCGGCAGGGAGGACGTTTGGCAAGAAGAA
TTAGCGGTTGCGTTCGCGCTTGTGAGGTTGCCGGGCAAATCCTTGACAAA
GCTTCCATCGATGAAAGCGCAGAGTTCGGAGGTCGATGGTTTGCGGAATT
GCGAGACTCACGGATGTCAGAGCCAGTTTCGCCTTGGACATGGGTGGTCG
TACGCTGCACTTTTCAGCTTTGACACCGATTTGCGCGCACGCTCAATCGC
CCGGAGTGTTTTTGTGGGGGGCAATCCAAAGCAGTCCCTCTTGTGGATCG
TTTGCAATGATCGGCTACGTCGAGTCTCGGGCGCTGCCGTCGAAGTGTTG
TGGATGGTTAAGTTGGTTAAGAGGGTTGGAAAAAGGGGCACGGCGTGTTT
TGCTGCCGCTTTGTAAGCGAAAGCTTCCACAGATTACCGCCCTCTCTTTA
TCTGCTGACAAAGTCGCGAGTGAGCAAAGTGCGCCCTCTCATTGTATCTG
TCGTCAATATGCGATTCCGCATGTGTCCCTCTGACTGTGACAGTACGAGC
TTGAAATATCGTGTCCGATGAAAATCGATAAGGTAGAGCTCGAACGGCCA
TCCCAGGACGCCCAGCCGTGTAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig80:131510..132232+

>mRNA_P-fluviatile_contig80.14726.1 ID=mRNA_P-fluviatile_contig80.14726.1|Name=mRNA_P-fluviatile_contig80.14726.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=798bp|location=Sequence derived from alignment at P-fluviatile_contig80:131510..132232+ (Porterinema fluviatile SAG_2381)
ATGGTTTGCGGAATTGCGAGACTCACGGATGTCAGAGCCAGTTTCGCCTT
GGACATGGGTGGTCGTACGCTGCACTTTTCAGCTTTGACACCGATTTGCG
CGCACGCTCAATCGCCCGGAGTGTTTTTGTGGGGGGCAATCCAAAGCAGT
CCCTCTTGTGGATCGTTTGCAATGATCGGCTACGTCGAGTCTCGGGCGCT
GCCGTCGAAGTGTTGTGGATGGTTAAGTTGGTTAAGAGGGTTGGAAAAAG
GGGCACGGCGTGTTTTGCTGCCGCTTTGTAAGCGAAAGCTTCCACAGATT
ACCGCCCTCTCTTTATCTGCTGACAAAGTCGCGAGTGAGCAAAGTGCGCC
CTCTCATTGTATCTGTCGTCAATATGCGATTCCGCATGTGTCCCTCTGAA
TGGTTTGCGGAATTGCGAGACTCACGGATGTCAGAGCCAGTTTCGCCTTG
GACATGGGTGGTCGTACGCTGCACTTTTCAGCTTTGACACCGATTTGCGC
GCACGCTCAATCGCCCGGAGTGTTTTTGTGGGGGGCAATCCAAAGCAGTC
CCTCTTGTGGATCGTTTGCAATGATCGGCTACGTCGAGTCTCGGGCGCTG
CCGTCGAAGTGTTGTGGATGGTTAAGTTGGTTAAGAGGGTTGGAAAAAGG
GGCACGGCGTGTTTTGCTGCCGCTTTGTAAGCGAAAGCTTCCACAGATTA
CCGCCCTCTCTTTATCTGCTGACAAAGTCGCGAGTGAGCAAAGTGCGCCC
TCTCATTGTATCTGTCGTCAATATGCGATTCCGCATGTGTCCCTCTGA
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