mRNA_P-fluviatile_contig80.14719.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14719.1
Unique NamemRNA_P-fluviatile_contig80.14719.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5KBT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.490e-8
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAMK 84
            LNGSDKWTLQSIILL+FRMVLQD+ AM+
Sbjct:   39 LNGSDKWTLQSIILLIFRMVLQDVSAMR 66
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BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5KDY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.240e-7
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAMK 84
            LNGSDKWTLQSIILL+FRMVLQD+ AM+
Sbjct:  169 LNGSDKWTLQSIILLIFRMVLQDVSAMR 196
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BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.860e-7
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAMK 84
            LNGSDKWTLQSIILL+FRMVLQD+ AM+
Sbjct:  356 LNGSDKWTLQSIILLIFRMVLQDVSAMR 383
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BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.880e-7
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAMK 84
            LNGSDKWTLQSIILL+FRMVLQD+ AM+
Sbjct:  500 LNGSDKWTLQSIILLIFRMVLQDVSAMR 527
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BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5JMI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.900e-7
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAMK 84
            L GSDKWTLQSI+LLVFRMVLQD+PAM+
Sbjct:  187 LTGSDKWTLQSIMLLVFRMVLQDVPAMR 214
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BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.290e-7
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAM 81
            LNGSDKWTLQSIILL+FRMVLQD+ AM
Sbjct:  906 LNGSDKWTLQSIILLIFRMVLQDVSAM 932
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BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 8.380e-7
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAMKHE 90
            L GSDKWTLQSI+LLVFRMVLQ++PAM  E
Sbjct:  140 LTGSDKWTLQSIMLLVFRMVLQNVPAMTRE 169
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BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.870e-6
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAMK 84
            L GSDKWTLQSI+LLVFRMVLQ++PAM+
Sbjct:  876 LTGSDKWTLQSIMLLVFRMVLQNVPAMR 903
[Close]
BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.550e-6
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAMK 84
            L GSDKWTLQSI+LLVFR+VLQDIP+M+
Sbjct:  308 LTGSDKWTLQSIMLLVFRVVLQDIPSMR 335
[Close]
BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Match: A0A6H5KJ80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ80_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 4.730e-6
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 LNGSDKWTLQSIILLVFRMVLQDIPAM 81
            L GSDKWTLQSI+LLVFR+VLQDIP+M
Sbjct:  322 LTGSDKWTLQSIMLLVFRVVLQDIPSM 348
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KBT3_9PHAE6.490e-885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDY2_9PHAE3.240e-785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU21_9PHAE3.860e-785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX1_9PHAE3.880e-785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMI6_9PHAE3.900e-785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE7.290e-788.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXT2_9PHAE8.380e-780.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.870e-682.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE2.550e-682.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ80_9PHAE4.730e-685.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:81916..82556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817269.36737-CDS-P-fluviatile_contig80:81915..819961622817269.36737-CDS-P-fluviatile_contig80:81915..81996Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 81916..81996 +
1693571850.3643758-CDS-P-fluviatile_contig80:81915..819961693571850.3643758-CDS-P-fluviatile_contig80:81915..81996Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 81916..81996 +
1622817269.378958-CDS-P-fluviatile_contig80:82474..825551622817269.378958-CDS-P-fluviatile_contig80:82474..82555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 82475..82555 +
1693571850.3734016-CDS-P-fluviatile_contig80:82474..825551693571850.3734016-CDS-P-fluviatile_contig80:82474..82555Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 82475..82555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14719.1prot_P-fluviatile_contig80.14719.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 81916..82555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14719.1

>prot_P-fluviatile_contig80.14719.1 ID=prot_P-fluviatile_contig80.14719.1|Name=mRNA_P-fluviatile_contig80.14719.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
LNGSDKWTLQSIILLVFRMVLQDIPAMKHEGAGDHRPPRGVGNRRGCVGR
PADA
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mRNA from alignment at P-fluviatile_contig80:81916..82556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14719.1 ID=mRNA_P-fluviatile_contig80.14719.1|Name=mRNA_P-fluviatile_contig80.14719.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=641bp|location=Sequence derived from alignment at P-fluviatile_contig80:81916..82556+ (Porterinema fluviatile SAG_2381)
TTGAACGGCAGTGACAAGTGGACCCTGCAGTCAATCATTCTCCTTGTTTT
CCGGATGGTTCTCCAGGATATTCCGGCCATGGTACGGATTTCAAAGGGAC
GTTTTCGGGCATTGATTCGAATCAACGTGAACTGGAAAGCCGTCGGCCAT
GCTCGACATGCACTCGCTTCATTCGACCAAAGTATCGGAGGAAACTCCTC
GACATGAATGTTCCCGCTGGCACACCCCGCCACTCGATTGCACATTTCCT
TTTGTTGCTGCCTCGGACCCAGCATGTGCCCATCACATGCTGTTGTATTT
CTGCGGCGGCGTATGATGTCTGTGCCCGTCCGCATTTCGCCCCGCTCTAA
CACGTGCGACATTCTGGCCACATGAGCAACTTGTACTCGGAAACCCTTCT
TGATAAGAATGGGTGGCGTAGACGCACATAAATATCCTATACTTGTCAGG
ATCAGGCTTTTCTGTGAGGGTGCATGAACTCACCTGAGATGTACCTATCG
CCACGCTTCTCCTGTGCTGTCGCATGAATTCCGGTGATAACGTCAATCTG
TAAGAGGAGAAACATGAAGGCGCGGGAGATCACCGACCTCCGCGCGGAGT
GGGGAACCGACGGGGATGTGTTGGACGCCCTGCGGACGCTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig80:81916..82556+

>mRNA_P-fluviatile_contig80.14719.1 ID=mRNA_P-fluviatile_contig80.14719.1|Name=mRNA_P-fluviatile_contig80.14719.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig80:81916..82556+ (Porterinema fluviatile SAG_2381)
TTGAACGGCAGTGACAAGTGGACCCTGCAGTCAATCATTCTCCTTGTTTT
CCGGATGGTTCTCCAGGATATTCCGGCCATGTTGAACGGCAGTGACAAGT
GGACCCTGCAGTCAATCATTCTCCTTGTTTTCCGGATGGTTCTCCAGGAT
ATTCCGGCCATGAAACATGAAGGCGCGGGAGATCACCGACCTCCGCGCGG
AGTGGGGAACCGACGGGGATGTGTTGGACGCCCTGCGGACGCTAAACATG
AAGGCGCGGGAGATCACCGACCTCCGCGCGGAGTGGGGAACCGACGGGGA
TGTGTTGGACGCCCTGCGGACGCT
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