mRNA_P-fluviatile_contig80.14718.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14718.1
Unique NamemRNA_P-fluviatile_contig80.14718.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5KDY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.580e-10
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            KAPNSWSK PCAYCMV+QRDDDTGGDL
Sbjct:   15 KAPNSWSKHPCAYCMVSQRDDDTGGDL 41
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BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.940e-10
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            KAPNSWSK PCAYCMV+QRDDDTGGDL
Sbjct:  202 KAPNSWSKHPCAYCMVSQRDDDTGGDL 228
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BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.970e-10
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            KAPNSWSK PCAYCMV+QRDDDTGGDL
Sbjct:  346 KAPNSWSKHPCAYCMVSQRDDDTGGDL 372
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BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.990e-10
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            KAPNSWSK PCAYCMV+QRDDDTGGDL
Sbjct:  693 KAPNSWSKHPCAYCMVSQRDDDTGGDL 719
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BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.610e-9
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            KAPN+WSK PCAYCM++QRDDDTGGDL
Sbjct:  295 KAPNNWSKHPCAYCMMSQRDDDTGGDL 321
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BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5K5N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.850e-9
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            K PN+WSK PCAYCMV+QRDDDTGGDL
Sbjct:   15 KPPNNWSKHPCAYCMVSQRDDDTGGDL 41
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BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.700e-8
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            KAPN+WSK PCA+CM +QRDDDTGGDL
Sbjct:  514 KAPNNWSKHPCAHCMASQRDDDTGGDL 540
[Close]
BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5KBT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.310e-8
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:    2 GTRKLKDILTNYSSLNGSDKWTLQSII 82
            GTRKLKD++TNY+SLNGSDKWTLQSII
Sbjct:   25 GTRKLKDVVTNYASLNGSDKWTLQSII 51
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BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            K   SWSK PCAYCMV+QRDDDTGGDL
Sbjct:  636 KGSKSWSKHPCAYCMVSQRDDDTGGDL 662
[Close]
BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = -3 
Query:   82 KAPNSWSKFPCAYCMVAQRDDDTGGDL 162
            KAPNSWS+ PCAYCMV QR DDT GDL
Sbjct:  722 KAPNSWSRHPCAYCMVRQRTDDTSGDL 748
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5KDY2_9PHAE2.580e-1092.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU21_9PHAE3.940e-1092.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX1_9PHAE3.970e-1092.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE3.990e-1092.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX6_9PHAE2.610e-985.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5N2_9PHAE4.850e-985.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ8_9PHAE1.700e-881.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBT3_9PHAE2.310e-888.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE1.120e-781.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.120e-781.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:81169..81955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size164
Cds size105
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14718.1prot_P-fluviatile_contig80.14718.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 81169..81896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.4889507-CDS-P-fluviatile_contig80:81168..812481622817267.4889507-CDS-P-fluviatile_contig80:81168..81248Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 81169..81248 -
1693571847.9479022-CDS-P-fluviatile_contig80:81168..812481693571847.9479022-CDS-P-fluviatile_contig80:81168..81248Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 81169..81248 -
1622817267.4992425-CDS-P-fluviatile_contig80:81871..818961622817267.4992425-CDS-P-fluviatile_contig80:81871..81896Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 81872..81896 -
1693571847.9574783-CDS-P-fluviatile_contig80:81871..818961693571847.9574783-CDS-P-fluviatile_contig80:81871..81896Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 81872..81896 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.5097382-UTR-P-fluviatile_contig80:81896..819551622817267.5097382-UTR-P-fluviatile_contig80:81896..81955Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 81897..81955 -
1693571847.975967-UTR-P-fluviatile_contig80:81896..819551693571847.975967-UTR-P-fluviatile_contig80:81896..81955Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 81897..81955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14718.1

>prot_P-fluviatile_contig80.14718.1 ID=prot_P-fluviatile_contig80.14718.1|Name=mRNA_P-fluviatile_contig80.14718.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=35bp
MSFSFLVPDRRRCRRHAVPPCSRRTEILTSCSVPY
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mRNA from alignment at P-fluviatile_contig80:81169..81955-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14718.1 ID=mRNA_P-fluviatile_contig80.14718.1|Name=mRNA_P-fluviatile_contig80.14718.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=787bp|location=Sequence derived from alignment at P-fluviatile_contig80:81169..81955- (Porterinema fluviatile SAG_2381)
GAATGATTGACTGCAGGGTCCACTTGTCACTGCCGTTCAAGGAAGAGTAG
TTGGTCAAGATGTCCTTCAGCTTCCTCGTACCAGGTGGGTACAGCAAGAA
GGACTTTTGAGCCATGATGGCCGAAACCAGCCTGCGTCCCGTCTTCGATA
GCATTTCCAAGAAGAACACCTGGCACAGCTGACATTGTCCCTACCGGCAA
TCGTGAATGGCGGAGGAAATGCGGCGAAGGACGCAGACCACGGTGCGCAT
TCAGCGAACAAACTGATGGAATGAGTTCAAAAGCAGGCGTCGTCTTCAAC
TATACCACGTCGAAGTTCATCTCCTGGGCCTTGTCGAGTCCATGACTCGG
AGGAAAATATATGGATTCTTACAATATAGTCACTTTATCTTCGTGGATGC
CATCAAAGCGACAACGGTATGTCCCGCCGTGGTTCCTAACATGCACGGTG
CGTAATACGAAGACACGACTCACCAGCGCGTCAAAGTGCAGACGCTCGAC
TGGTACGTGCTCCGTGGGAATTATGCGCATGGCGTTGTAAAGGGGTAACG
GGCCTAAGGTCGCGTCTGGCGCCACCAGACCCAATTCTTTTGAGCGTTCG
TCCTGTTCTTTTGCGTCTTCCGCTAGCGCGTCAAGCTCGGATAGGCCGTG
AGTTATCTGTCCCCACGTGCGCCGGTGCTTGTCGATGTCGAAACCAGGAT
TTCCCAGATCGCCGCCGGTGTCGTCGTCACGCTGTGCCACCATGCAGTAG
GCGCACGGAAATTTTGACCAGCTGTTCGGTGCCTTAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig80:81169..81955-

>mRNA_P-fluviatile_contig80.14718.1 ID=mRNA_P-fluviatile_contig80.14718.1|Name=mRNA_P-fluviatile_contig80.14718.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=210bp|location=Sequence derived from alignment at P-fluviatile_contig80:81169..81955- (Porterinema fluviatile SAG_2381)
ATGTCCTTCAGCTTCCTCGTACCAGATGTCCTTCAGCTTCCTCGTACCAG
ATCGCCGCCGGTGTCGTCGTCACGCTGTGCCACCATGCAGTAGGCGCACG
GAAATTTTGACCAGCTGTTCGGTGCCTTATATCGCCGCCGGTGTCGTCGT
CACGCTGTGCCACCATGCAGTAGGCGCACGGAAATTTTGACCAGCTGTTC
GGTGCCTTAT
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