mRNA_P-fluviatile_contig80.14716.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14716.1
Unique NamemRNA_P-fluviatile_contig80.14716.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.230e-30
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCGRKVYVNDTCMCEVDGEASLCRILE 189
            VNCVPTRR GNVMNSNHNGTLARS PFF FDGIRA+VCGRKVYVNDTC+CEV+G A+LCRILE
Sbjct:   34 VNCVPTRREGNVMNSNHNGTLARSIPFFGFDGIRARVCGRKVYVNDTCVCEVEGVATLCRILE 96
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.960e-30
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCGRKVYVNDTCMCEVDGEASLCRILE 189
            VNCVPTRR GNVMNSNHNGTLARS PFF FDGIRA+VCGRKVYVNDTC+CEV+G A+LCRILE
Sbjct:  333 VNCVPTRREGNVMNSNHNGTLARSIPFFGFDGIRARVCGRKVYVNDTCVCEVEGVATLCRILE 395
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.960e-30
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCGRKVYVNDTCMCEVDGEASLCRILE 189
            VNCVPTRR GNVMNSNHNGTLARS PFF FDGIRA+VCGRKVYVNDTC+CEV+G A+LCRILE
Sbjct:  324 VNCVPTRREGNVMNSNHNGTLARSIPFFGFDGIRARVCGRKVYVNDTCVCEVEGVATLCRILE 386
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 9.060e-29
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCGRKVYVNDTCMCEVDGEASLCRILE 189
            +NCVPTRR GNVMNSNHN T ARSTPFF FDG+RA+VCGRKVYV DTC+CEV+GEA+LCR+LE
Sbjct:   35 INCVPTRREGNVMNSNHNDTFARSTPFFGFDGMRARVCGRKVYVTDTCVCEVEGEATLCRMLE 97
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.310e-26
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCGRKVYVNDTCMCEVDGEASLCRILE 189
            +NCVPTRR G VMNSNHNGTLARSTP F FD IRA+VCGRKVYV +TC+CEV+G A+LCR+LE
Sbjct:  214 INCVPTRREGTVMNSNHNGTLARSTPLFGFDSIRARVCGRKVYVTNTCVCEVEGGANLCRMLE 276
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.320e-26
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCGRKVYVNDTCMCEVDGEASLCRILE 189
            +NCVPTR+ GNVMNSN NGTLARSTPFF FDGIRA+VCGRKVYVNDTC+ EV+G  +LCR+L+
Sbjct:  403 INCVPTRQEGNVMNSNQNGTLARSTPFFGFDGIRARVCGRKVYVNDTCVAEVEGVVTLCRMLK 465
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.770e-25
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCGRKVYVNDTCMCEVDGEASLCRILE 189
            VNCVPTRR GNVMNSNHNG LA+STPFF FDGIRA VCGRKVYV+D C CEV G  +L R++E
Sbjct:   73 VNCVPTRREGNVMNSNHNGALAKSTPFFGFDGIRASVCGRKVYVHDCCACEVGGVLTLGRLME 135
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.480e-8
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCG 117
            VNCVPTRR GNVMNSNHNG LA+STPFF   G  A+V G
Sbjct:  386 VNCVPTRREGNVMNSNHNGALAKSTPFF---GTAAEVRG 421
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BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.180e-7
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 VNCVPTRRAGNVMNSNHNGTLARSTPFF 84
            +NCV TRR GNV+NSNHNGTLARSTPFF
Sbjct:  323 INCVATRREGNVVNSNHNGTLARSTPFF 350
[Close]
BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Match: A0A6H5J9K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K9_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.300e-6
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   10 VPTRRAGNVMNSNHNGTLARSTPFFSFDGIR-AKVCGRKVYVNDTCM 147
            VPT  AGN ++++ +G LARS+PFF FDG+  A+   RKVYVND  M
Sbjct:  158 VPTEPAGNALSTSMHGRLARSSPFFGFDGLLGARTSNRKVYVNDVVM 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KQX1_9PHAE2.230e-3087.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE2.960e-3087.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE2.960e-3087.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX6_9PHAE9.060e-2980.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ8_9PHAE1.310e-2677.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE1.320e-2677.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML3_9PHAE7.770e-2576.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2F5_9PHAE2.480e-874.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG22_9PHAE2.180e-785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9K9_9PHAE1.300e-655.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:79597..79787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size191
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817269.3029466-CDS-P-fluviatile_contig80:79596..797851622817269.3029466-CDS-P-fluviatile_contig80:79596..79785Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 79597..79785 +
1693571850.3423865-CDS-P-fluviatile_contig80:79596..797851693571850.3423865-CDS-P-fluviatile_contig80:79596..79785Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 79597..79785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14716.1prot_P-fluviatile_contig80.14716.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 79597..79785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14716.1

>prot_P-fluviatile_contig80.14716.1 ID=prot_P-fluviatile_contig80.14716.1|Name=mRNA_P-fluviatile_contig80.14716.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=63bp
VNCVPTRRAGNVMNSNHNGTLARSTPFFSFDGIRAKVCGRKVYVNDTCMC
EVDGEASLCRILE
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mRNA from alignment at P-fluviatile_contig80:79597..79787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14716.1 ID=mRNA_P-fluviatile_contig80.14716.1|Name=mRNA_P-fluviatile_contig80.14716.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=191bp|location=Sequence derived from alignment at P-fluviatile_contig80:79597..79787+ (Porterinema fluviatile SAG_2381)
GTCAACTGCGTGCCAACGCGGCGTGCGGGAAACGTCATGAACTCGAATCA
CAACGGCACACTGGCGAGATCAACACCTTTTTTCAGCTTTGACGGGATAC
GAGCAAAAGTATGCGGCAGGAAAGTCTACGTTAACGACACCTGTATGTGC
GAAGTCGATGGAGAGGCTTCCCTATGCCGAATTTTGGAGAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig80:79597..79787+

>mRNA_P-fluviatile_contig80.14716.1 ID=mRNA_P-fluviatile_contig80.14716.1|Name=mRNA_P-fluviatile_contig80.14716.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=378bp|location=Sequence derived from alignment at P-fluviatile_contig80:79597..79787+ (Porterinema fluviatile SAG_2381)
GTCAACTGCGTGCCAACGCGGCGTGCGGGAAACGTCATGAACTCGAATCA
CAACGGCACACTGGCGAGATCAACACCTTTTTTCAGCTTTGACGGGATAC
GAGCAAAAGTATGCGGCAGGAAAGTCTACGTTAACGACACCTGTATGTGC
GAAGTCGATGGAGAGGCTTCCCTATGCCGAATTTTGGAGGTCAACTGCGT
GCCAACGCGGCGTGCGGGAAACGTCATGAACTCGAATCACAACGGCACAC
TGGCGAGATCAACACCTTTTTTCAGCTTTGACGGGATACGAGCAAAAGTA
TGCGGCAGGAAAGTCTACGTTAACGACACCTGTATGTGCGAAGTCGATGG
AGAGGCTTCCCTATGCCGAATTTTGGAG
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