mRNA_P-fluviatile_contig80.14715.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14715.1
Unique NamemRNA_P-fluviatile_contig80.14715.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:77648..78845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size188
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.4368799-CDS-P-fluviatile_contig80:77647..776931622817267.4368799-CDS-P-fluviatile_contig80:77647..77693Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 77648..77693 +
1693571847.9269323-CDS-P-fluviatile_contig80:77647..776931693571847.9269323-CDS-P-fluviatile_contig80:77647..77693Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 77648..77693 +
1622817267.4533432-CDS-P-fluviatile_contig80:78703..788431622817267.4533432-CDS-P-fluviatile_contig80:78703..78843Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 78704..78843 +
1693571847.9384792-CDS-P-fluviatile_contig80:78703..788431693571847.9384792-CDS-P-fluviatile_contig80:78703..78843Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 78704..78843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14715.1prot_P-fluviatile_contig80.14715.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 77648..78843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14715.1

>prot_P-fluviatile_contig80.14715.1 ID=prot_P-fluviatile_contig80.14715.1|Name=mRNA_P-fluviatile_contig80.14715.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=62bp
QAVSEGENDTIAGAEGAAEHTGLDGQGTPDSPCEPRPGVEFGAPDDGSAC
ASGEDENIDSGN
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mRNA from alignment at P-fluviatile_contig80:77648..78845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14715.1 ID=mRNA_P-fluviatile_contig80.14715.1|Name=mRNA_P-fluviatile_contig80.14715.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1198bp|location=Sequence derived from alignment at P-fluviatile_contig80:77648..78845+ (Porterinema fluviatile SAG_2381)
CAAGCCGTGAGCGAAGGAGAGAATGATACAATTGCCGGCGCAGAAGGTGC
GCGCGTATTTTACGAGAGCGAAGTATACATTCTGTGCGCGATCAAAAGGC
GCTGCGCAAATTATCCACGATATATGCTTGTTGATCCCTCGAACATGTTT
GGTCTCGCATGATACATTCTCCACGTTGGAAGATTTCCTGTCTAACCCTG
TGACATCAATCGGTTAATGCCACAAACAAATTGGCGTACGCACAAGAAGC
CAAATACGCGGAAATGGCGAGACAAACATTCCGTCGGCTGCAGTGTACCG
TGTAAAGGGATGTGTGGGACGTAGAATCTAGTCTAATCGATCCATCCGCA
AAAAAAGCATGTTTTCCAAGTACCTCACGCATCAGGTTCGCGGGATGTGC
GCGGCGTCAGAAGGCAGAAAAATTGACATGAAATACTTCTGCTGCGCTGC
TGAAAAAAAGAGAACACCCTTGTGTAAGCGGAAAGCATTTTTTCCAAGTA
CCTCACGCATAAGGTTCGCGGGATGTGCGCGGCGTCAGAAGACATAAAAA
CATTGACATGAAATACTTCTGCTGCGCTGCTGAAAGAAAGATAACACCCT
TGTGTAAGCGGAAGGCGCATTTGCCCATATCAACGGTCTGGGCGTGGCAA
GAAGCGCAGGGAGGATAGGGTTACCTACATCTTGCAAGGTTTTAGCCATC
CTAAGGGGGCAGAGTGGCGCCATGAAAATGCGTTTTTATCTAGCGCCGTT
CCGTCATCACCGTGTGATGGCCGTGATGCTTACTACACGCGGTTGTGCGG
TGACAGCGGATTATGCGGCATTCGATATGCGCAGCACGTGAGAATAAAAT
AATGCGAAATGGGCTCGTGAAGCTTCATATCTCTCATTTCTCCTGAGAGC
ACCTTTTTTTTTATGAGAAGCAAAACAACACGAAAGGATCACACACCCTT
AAATATGAGTTCCAGAGTGCCAGAATGTTATGAAAAAtagTACTTCTTTT
TTTTTGGTATTATGTCGATTGATCCCGTATTTTCGCTCTCAATCAATGTC
GTATAGGTGCTGCGGAACACACAGGATTGGACGGACAGGGAACGCCCGAT
AGCCCGTGCGAGCCCCGACCTGGGGTCGAATTTGGTGCTCCTGACGACGG
TTCAGCGTGCGCGAGTGGAGAAGACGAGAACATCGACAGCGGCAATGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig80:77648..78845+

>mRNA_P-fluviatile_contig80.14715.1 ID=mRNA_P-fluviatile_contig80.14715.1|Name=mRNA_P-fluviatile_contig80.14715.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=372bp|location=Sequence derived from alignment at P-fluviatile_contig80:77648..78845+ (Porterinema fluviatile SAG_2381)
CAAGCCGTGAGCGAAGGAGAGAATGATACAATTGCCGGCGCAGAAGCAAG
CCGTGAGCGAAGGAGAGAATGATACAATTGCCGGCGCAGAAGGTGCTGCG
GAACACACAGGATTGGACGGACAGGGAACGCCCGATAGCCCGTGCGAGCC
CCGACCTGGGGTCGAATTTGGTGCTCCTGACGACGGTTCAGCGTGCGCGA
GTGGAGAAGACGAGAACATCGACAGCGGCAATGTGCTGCGGAACACACAG
GATTGGACGGACAGGGAACGCCCGATAGCCCGTGCGAGCCCCGACCTGGG
GTCGAATTTGGTGCTCCTGACGACGGTTCAGCGTGCGCGAGTGGAGAAGA
CGAGAACATCGACAGCGGCAAT
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