mRNA_P-fluviatile_contig8.14706.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14706.1
Unique NamemRNA_P-fluviatile_contig8.14706.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3992328..3993882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size180
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14706.1prot_P-fluviatile_contig8.14706.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3992427..3993882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.4583006-UTR-P-fluviatile_contig8:3992327..39924261622817217.4583006-UTR-P-fluviatile_contig8:3992327..3992426Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3992328..3992426 -
1693571542.9978995-UTR-P-fluviatile_contig8:3992327..39924261693571542.9978995-UTR-P-fluviatile_contig8:3992327..3992426Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3992328..3992426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.4700701-CDS-P-fluviatile_contig8:3992426..39925131622817217.4700701-CDS-P-fluviatile_contig8:3992426..3992513Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3992427..3992513 -
1693571543.0096326-CDS-P-fluviatile_contig8:3992426..39925131693571543.0096326-CDS-P-fluviatile_contig8:3992426..3992513Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3992427..3992513 -
1622817217.4805791-CDS-P-fluviatile_contig8:3993789..39938821622817217.4805791-CDS-P-fluviatile_contig8:3993789..3993882Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3993790..3993882 -
1693571543.0209358-CDS-P-fluviatile_contig8:3993789..39938821693571543.0209358-CDS-P-fluviatile_contig8:3993789..3993882Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3993790..3993882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14706.1

>prot_P-fluviatile_contig8.14706.1 ID=prot_P-fluviatile_contig8.14706.1|Name=mRNA_P-fluviatile_contig8.14706.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=60bp
VSLQRKRDKGCVESFVIRDGVRHPCVPPIQDPSSRHPPPDDRSTIVRSSS
GHNSAAAPW*
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mRNA from alignment at P-fluviatile_contig8:3992328..3993882-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14706.1 ID=mRNA_P-fluviatile_contig8.14706.1|Name=mRNA_P-fluviatile_contig8.14706.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1555bp|location=Sequence derived from alignment at P-fluviatile_contig8:3992328..3993882- (Porterinema fluviatile SAG_2381)
GTCTCCCTGCAACGGAAGAGGGATAAGGGCTGCGTGGAGAGCTTTGTGAT
TCGAGACGGAGTCAGGCACCCCTGCGTACCACCCATCCAAGATGTGAGCA
CTTGTTGAAGGAGAAATATGTCGAAATACTGAGAATCGGGCCAATCCAGC
AGAATGACGAACCGTACGGATGTGCTGCAGGAAAGCATCGTAGCTTGTTT
CGTACCAGTTTACGCCGTTCGCTTGCTTGCACCGGAAGGCAATCGTCCGG
GATGGGTTTGCAATCACCGCGCATGATGAATGCTGGCTTGAGATGGGATC
AATATTCTTAGCTGTTCGGGCGCGGGCGACAAGGTTCAACCTTGGCGCGA
TCCCAAGTCGTTCGAAACTCACAGTCCGGTGGGCACGTTGAGACGACGTC
CTGACCACGACCTGCCAGAGAGTCCAGGTGCTACATATTTTCCCCTTGAT
TGCAAGAGCAAAATCCGCGATTTCGTCAGGCAGCAAGCAGCTTTGCATCG
ATAGTGTGCATCAACCGAACGAGAGCAGTTGAGGCTAACTTGCGCTATCG
CGCCGCGCCGTTTATCGGCCCCCCCTCCAGCGTATGCCCCTGCAGCCTGT
AGTTTGCAGGCGACAGTGAAAGTAAGCGTTGCCTACAGCAGTTGTGTGTT
CTACAAATCATATCCATGTCGCCTTGGTACCAACCGAACGTTCCCAAGGC
TAACGGATAATGTTTTAACACGGTGAACGACAGCTCAAGTCCAACACGAC
ATCATCACGGGCACCACCCAGAAAAATGTTGCCCTTGTTGGCAACACACA
GTCTACCGGCATTTCCCAAATCGGACAACACACGGGAATCGAGGGAAACT
GGCGAATCTCCTTGCAAACGGCACCAAGAGCAACAAAGACACATTCTTTG
TACGGAATAGTCGAAAGGGGCACTCGAGCGGCATTTCTCACTTTTGCAAA
TTCCCACTCGTCGAGACACAGGTTGGCCACGCCCACTCCTTTTGACTCTT
TGCAACAGCAGTTGCGTATCTTAATCAGCGTGAAAACCACGCCGTCATTT
GTTTCTCCCCCGCTATTATGGAGCAATCTCGGATGAAAAGTACCCCCTCC
AATAGCGAGCGTGTTGGGATGTAACTTTGCGAAAGCTGTATCTCCCTTCG
AGGAAGCCTACAACGCAAGAATTCATCGGGTCACTGCCTCACTTTCATTA
GGGTTACGAGCGGACGGCTACTTCGCCATGAACATCCTCGTCTACAGCAT
CCTTCTCGCCGGTTGGATGAAGGAAGAAATTATGACGTCAATAAAAGTAC
GCGGATCTACGACAATGTAGAGCTCAAATCAAAGAACAATTTGTCCTCCA
TCGCCCGGCCATCGTCCAGCCATCATCCAGGCATCCACCGCCCGACGACC
GTTCGACGATCGTCCGGTCGTCGTCCGGCCATAATTCGGCCGCTGCGCCT
TGGTGACTTTGCTCCTTCGTGTCTGAACGATATTCGGATTTCGGCTGCAT
ACTTCCCGTCGCAGTGTGCTTGATAGGGTCTTCTCTTGGCCCTTTGTAAA
GGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3992328..3993882-

>mRNA_P-fluviatile_contig8.14706.1 ID=mRNA_P-fluviatile_contig8.14706.1|Name=mRNA_P-fluviatile_contig8.14706.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=360bp|location=Sequence derived from alignment at P-fluviatile_contig8:3992328..3993882- (Porterinema fluviatile SAG_2381)
GTCTCCCTGCAACGGAAGAGGGATAAGGGCTGCGTGGAGAGCTTTGTGAT
TCGAGACGGAGTCAGGCACCCCTGCGTACCACCCATCCAAGATGTCTCCC
TGCAACGGAAGAGGGATAAGGGCTGCGTGGAGAGCTTTGTGATTCGAGAC
GGAGTCAGGCACCCCTGCGTACCACCCATCCAAGATCCATCATCCAGGCA
TCCACCGCCCGACGACCGTTCGACGATCGTCCGGTCGTCGTCCGGCCATA
ATTCGGCCGCTGCGCCTTGGTGACCATCATCCAGGCATCCACCGCCCGAC
GACCGTTCGACGATCGTCCGGTCGTCGTCCGGCCATAATTCGGCCGCTGC
GCCTTGGTGA
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