mRNA_P-fluviatile_contig8.14705.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14705.1
Unique NamemRNA_P-fluviatile_contig8.14705.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3986295..3986751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.4158242-CDS-P-fluviatile_contig8:3986294..39863751622817217.4158242-CDS-P-fluviatile_contig8:3986294..3986375Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3986295..3986375 -
1693571542.9766705-CDS-P-fluviatile_contig8:3986294..39863751693571542.9766705-CDS-P-fluviatile_contig8:3986294..3986375Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3986295..3986375 -
1622817217.426886-CDS-P-fluviatile_contig8:3986670..39867511622817217.426886-CDS-P-fluviatile_contig8:3986670..3986751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3986671..3986751 -
1693571542.9875717-CDS-P-fluviatile_contig8:3986670..39867511693571542.9875717-CDS-P-fluviatile_contig8:3986670..3986751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3986671..3986751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14705.1prot_P-fluviatile_contig8.14705.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3986295..3986751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14705.1

>prot_P-fluviatile_contig8.14705.1 ID=prot_P-fluviatile_contig8.14705.1|Name=mRNA_P-fluviatile_contig8.14705.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
LRDSCCDILGKFYLCSSCVDYNRSKPKTRVQTTVQGWDEGVLMQLPIYVQ
EIFP
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mRNA from alignment at P-fluviatile_contig8:3986295..3986751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14705.1 ID=mRNA_P-fluviatile_contig8.14705.1|Name=mRNA_P-fluviatile_contig8.14705.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=457bp|location=Sequence derived from alignment at P-fluviatile_contig8:3986295..3986751- (Porterinema fluviatile SAG_2381)
TTGCGAGATTCTTGCTGCGATATTTTGGGCAAATTCTACCTGTGCAGCTC
GTGCGTGGACTACAACAGGTCGAAACCAAAGGCAAGCGCTCTATCCCTCA
CGTCGATGCACGTGAATATTTCAGAAACTATCCTTCGCGGAGAGCGACCT
TGCGAGACTCTTGCTGTGCTATTCAGAGAAAATCCCGCAGGTCGACCTGC
CACGCGTCGATCGACCATATGACGTCGAAATCCTTGCATCGAGGTTTATC
TATTGTTATCCTACTGCGCCGGTCCTTCCGAAGTTCACTGTCATCCGCAA
TTAATACCTGTTGACCGAAACGCACGAGCGCTTTTCCACCACCCGTCGAT
GCTTCCGACCTGACCAGACCTGTAAGACTCGAGTCCAGACGACCGTTCAG
GGTTGGGATGAAGGCGTGCTGATGCAACTTCCGATTTACGTGCAGGAGAT
CTTCCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3986295..3986751-

>mRNA_P-fluviatile_contig8.14705.1 ID=mRNA_P-fluviatile_contig8.14705.1|Name=mRNA_P-fluviatile_contig8.14705.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig8:3986295..3986751- (Porterinema fluviatile SAG_2381)
TTGCGAGATTCTTGCTGCGATATTTTGGGCAAATTCTACCTGTGCAGCTC
GTGCGTGGACTACAACAGGTCGAAACCAAAGTTGCGAGATTCTTGCTGCG
ATATTTTGGGCAAATTCTACCTGTGCAGCTCGTGCGTGGACTACAACAGG
TCGAAACCAAAGACTCGAGTCCAGACGACCGTTCAGGGTTGGGATGAAGG
CGTGCTGATGCAACTTCCGATTTACGTGCAGGAGATCTTCCCGACTCGAG
TCCAGACGACCGTTCAGGGTTGGGATGAAGGCGTGCTGATGCAACTTCCG
ATTTACGTGCAGGAGATCTTCCCG
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