mRNA_P-fluviatile_contig8.14698.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14698.1
Unique NamemRNA_P-fluviatile_contig8.14698.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: D7G227_ECTSI (Ribonucloprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G227_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 6.810e-79
Identity = 121/142 (85.21%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:  361 PYEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKDKIWDPNTKQLFDDMTKVCIEEMSQVPT 786
            PY VR+KAVT ISKPMA EK+TKK YKL+KKAAKEKICRRGVKEVCKG+RQGRKGIC+IAGDISPIDVISHMA YCE+QGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKD +WDP TK+LF D+ +VCI+EM QVPT
Sbjct:   30 PYAVRMKAVTVISKPMADEKKTKKFYKLIKKAAKEKICRRGVKEVCKGMRQGRKGICVIAGDISPIDVISHMAYYCEEQGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKDSVWDPVTKELFADLKEVCIQEMVQVPT 171
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: A0A836CPU2_9STRA (Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU2_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.880e-42
Identity = 83/142 (58.45%), Postives = 101/142 (71.13%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKDKIWDPNTKQLFDDMTKVCIEEMSQVPTL 789
            YE RLKA T I++PMA++KQ KKLYKLVKK+A  K  RRGVKEV        KG+C+IAGDISPIDVI+H+  YCE+  V Y+YVPSK DLGAAA TKRPTSCVLITP           +++ L+ ++  +C EE SQVP L
Sbjct:   19 YEERLKACTVIARPMATKKQAKKLYKLVKKSAGAKSVRRGVKEVXXXXXXXXKGVCVIAGDISPIDVITHLPVYCEENEVRYMYVPSKQDLGAAASTKRPTSCVLITPKPGF-------DSQDLYTEVEAMCAEEESQVPRL 153
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: A0A7S3MHC4_9STRA (Ribonucloprotein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHC4_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.100e-38
Identity = 76/138 (55.07%), Postives = 100/138 (72.46%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKDKIWDPNTKQLFDDMTKVCIEEMSQ 777
            Y+ ++K V+ I++P+AS+K TKKL+KLVKKA++ K  RRGVKEV K +R+G KG CIIAGDISPIDV+ H+   CED+ + Y YVPSK+DLGAAA TKRPTSC+L+TP    KD   +     L+D + K   E + Q
Sbjct:   11 YDEKVKFVSKIAQPLASKKTTKKLHKLVKKASQAKFVRRGVKEVVKALRKGSKGFCIIAGDISPIDVVVHLPIMCEDRRIPYFYVPSKLDLGAAASTKRPTSCILVTP----KDSFSE---MSLYDKLFKEAQEALVQ 141
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: A0A7S2LTM4_9STRA (Ribonucloprotein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LTM4_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.780e-38
Identity = 71/108 (65.74%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITP 687
            YE R +AV AIS+P+AS+K TK+ +KLVKKA   K CRRGVKEV KG+R+G KG+C+IAGDI P+DVISH+    E+ G  YI+VPSK DLGAAA TKRPTSCVL++P
Sbjct:   18 YEDRCRAVNAISQPLASKKSTKRAHKLVKKATSSKCCRRGVKEVIKGIRKGEKGLCVIAGDIFPLDVISHLPILLEETGSPYIFVPSKQDLGAAASTKRPTSCVLVSP 125
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: K3WNU8_GLOUD (Ribonucloprotein n=5 Tax=Oomycota TaxID=4762 RepID=K3WNU8_GLOUD)

HSP 1 Score: 144 bits (362), Expect = 5.750e-38
Identity = 70/108 (64.81%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITP 687
            YE R+K V+ I+KP+AS+KQTK+ YK+VKKA K K  +RGVKEV K +R+G KG+CIIAGDISPIDVISH+   CE+  + Y++ PSKVDLGA+A +KRPTSC+LITP
Sbjct:   13 YEERVKHVSVIAKPLASKKQTKRAYKVVKKATKVKGIKRGVKEVVKSIRKGEKGVCIIAGDISPIDVISHIPVLCEENDIPYLFTPSKVDLGASALSKRPTSCILITP 120
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: M4C1U3_HYAAE (Ribosomal_L7Ae domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C1U3_HYAAE)

HSP 1 Score: 144 bits (362), Expect = 6.300e-38
Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITP 687
            YE R+K V+ ISKP+AS+KQTK+ YK++KKA K K  RRGVKEV K +R+G KG+C+IAGDISPIDVISH+ + CE+  + YI+ PS+VDLGA+  +KRPTSC+LITP
Sbjct:   16 YEERVKHVSVISKPLASKKQTKRTYKVLKKATKVKGIRRGVKEVVKSIRKGEKGVCVIAGDISPIDVISHIPTLCEENDIPYIFTPSRVDLGASVLSKRPTSCILITP 123
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: F0YBI4_AURAN (Ribonucloprotein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBI4_AURAN)

HSP 1 Score: 140 bits (354), Expect = 3.010e-37
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITP 687
            YE RL A++ IS P+A EK TKKL+KLVKKA+  K  RRGVKEV K +R+G  G+CIIAGDISPIDVI H+  +CE++ V YIYVPSK DLG AA TKRPTSCV+++P
Sbjct:    1 YEERLAALSPISTPLADEKLTKKLHKLVKKASSAKALRRGVKEVVKAIRKGATGLCIIAGDISPIDVICHLPIFCEEKSVPYIYVPSKQDLGFAALTKRPTSCVMVSP 108
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: A0A024TAU2_9STRA (Ribonucloprotein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TAU2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.340e-37
Identity = 67/108 (62.04%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITP 687
            YE R+K V+ I++P+A +K TKKLYKLVKK+ K K  +RGVKEV K +R+G KG+C+IAGDISPIDVISH+   CE   ++Y++ PSKVDLGA+A +KRPTSC++ITP
Sbjct:   13 YEERVKHVSVIAQPLAVKKLTKKLYKLVKKSTKVKCTKRGVKEVVKAIRKGEKGLCVIAGDISPIDVISHIPVLCESNDISYVFTPSKVDLGASASSKRPTSCIMITP 120
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: A0A2D4CEW8_PYTIN (Ribonucloprotein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEW8_PYTIN)

HSP 1 Score: 140 bits (353), Expect = 8.520e-37
Identity = 66/108 (61.11%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITP 687
            YE R+K ++ I+KP+AS+K TK++YK+VKKA K K  +RGVKEV K +R+G KG+C+IAGDISP+DV+SH+   CE+  + YI+ PSKVDLGA+A +KRPTSC+LITP
Sbjct:   14 YEDRVKHISVIAKPLASKKHTKRVYKVVKKATKVKGIKRGVKEVVKALRKGEKGLCVIAGDISPVDVVSHIPVLCEEHDIPYIFTPSKVDLGASALSKRPTSCILITP 121
[Close]
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Match: A0A7S1Z812_TRICV (Ribonucloprotein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z812_TRICV)

HSP 1 Score: 141 bits (355), Expect = 1.020e-36
Identity = 73/114 (64.04%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:  364 YEVRLKAVTAISKPMASEKQTKKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHMASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKD 705
            YE R+KAV AIS P+AS+K TKK +KLVKKA+  K  RRGVKEV KG+R+G KG+ I+AGDI PIDV+SH+    E++GV Y++VPSK DLGAAA TKRPTSCVLI  P + K+
Sbjct:   27 YEERVKAVNAISSPLASKKTTKKCHKLVKKASSAKRVRRGVKEVVKGIRKGDKGLAILAGDIFPIDVVSHLPILFEEKGVPYLFVPSKQDLGAAASTKRPTSCVLIKAPEKGKE 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G227_ECTSI6.810e-7985.21Ribonucloprotein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A836CPU2_9STRA2.880e-4258.45Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7S3MHC4_9STRA4.100e-3855.07Ribonucloprotein n=1 Tax=Spumella elongata TaxID=8... [more]
A0A7S2LTM4_9STRA4.780e-3865.74Ribonucloprotein n=1 Tax=Leptocylindrus danicus Ta... [more]
K3WNU8_GLOUD5.750e-3864.81Ribonucloprotein n=5 Tax=Oomycota TaxID=4762 RepID... [more]
M4C1U3_HYAAE6.300e-3863.89Ribosomal_L7Ae domain-containing protein n=1 Tax=H... [more]
F0YBI4_AURAN3.010e-3765.74Ribonucloprotein (Fragment) n=1 Tax=Aureococcus an... [more]
A0A024TAU2_9STRA4.340e-3762.04Ribonucloprotein n=5 Tax=Aphanomyces TaxID=100860 ... [more]
A0A2D4CEW8_PYTIN8.520e-3761.11Ribonucloprotein n=1 Tax=Pythium insidiosum TaxID=... [more]
A0A7S1Z812_TRICV1.020e-3664.04Ribonucloprotein n=1 Tax=Trieres chinensis TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3921034..3926837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.4
Seed ortholog evalue5.8e-70
Seed eggNOG ortholog2880.D7G227
Preferred nameNHP2
KEGG koko:K02449,ko:K11129,ko:K11321
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
GOsGO:0000154,GO:0000469,GO:0000470,GO:0000491,GO:0000492,GO:0000723,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0010833,GO:0015030,GO:0015934,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016604,GO:0018130,GO:0019438,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042273,GO:0042592,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0051276,GO:0060249,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071826,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090305,GO:0090501,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.rRNA pseudouridine synthesis
EggNOG OGsCOG1358@1,KOG3167@2759
EC2.7.11.22
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03009,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNHP2 subunit of the H/ACA ribonucleoprotein complex
Ec32 orthologEc-11_003590.1
Exons5
Model size1278
Cds size519
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.8992198-UTR-P-fluviatile_contig8:3921033..39213091622817266.8992198-UTR-P-fluviatile_contig8:3921033..3921309Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3921034..3921309 +
1693571847.0092862-UTR-P-fluviatile_contig8:3921033..39213091693571847.0092862-UTR-P-fluviatile_contig8:3921033..3921309Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3921034..3921309 +
1622817266.9791448-UTR-P-fluviatile_contig8:3926354..39268371622817266.9791448-UTR-P-fluviatile_contig8:3926354..3926837Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3926355..3926837 +
1693571847.282154-UTR-P-fluviatile_contig8:3926354..39268371693571847.282154-UTR-P-fluviatile_contig8:3926354..3926837Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3926355..3926837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817266.912567-CDS-P-fluviatile_contig8:3921309..39214561622817266.912567-CDS-P-fluviatile_contig8:3921309..3921456Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3921310..3921456 +
1693571847.2124088-CDS-P-fluviatile_contig8:3921309..39214561693571847.2124088-CDS-P-fluviatile_contig8:3921309..3921456Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3921310..3921456 +
1622817266.9242465-CDS-P-fluviatile_contig8:3921762..39218311622817266.9242465-CDS-P-fluviatile_contig8:3921762..3921831Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3921763..3921831 +
1693571847.2248974-CDS-P-fluviatile_contig8:3921762..39218311693571847.2248974-CDS-P-fluviatile_contig8:3921762..3921831Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3921763..3921831 +
1622817266.9389353-CDS-P-fluviatile_contig8:3922367..39224861622817266.9389353-CDS-P-fluviatile_contig8:3922367..3922486Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3922368..3922486 +
1693571847.2462268-CDS-P-fluviatile_contig8:3922367..39224861693571847.2462268-CDS-P-fluviatile_contig8:3922367..3922486Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3922368..3922486 +
1622817266.9519823-CDS-P-fluviatile_contig8:3925355..39255291622817266.9519823-CDS-P-fluviatile_contig8:3925355..3925529Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3925356..3925529 +
1693571847.2610438-CDS-P-fluviatile_contig8:3925355..39255291693571847.2610438-CDS-P-fluviatile_contig8:3925355..3925529Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3925356..3925529 +
1622817266.9659476-CDS-P-fluviatile_contig8:3926344..39263541622817266.9659476-CDS-P-fluviatile_contig8:3926344..3926354Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3926345..3926354 +
1693571847.2728553-CDS-P-fluviatile_contig8:3926344..39263541693571847.2728553-CDS-P-fluviatile_contig8:3926344..3926354Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3926345..3926354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14698.1prot_P-fluviatile_contig8.14698.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3921310..3926354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14698.1

>prot_P-fluviatile_contig8.14698.1 ID=prot_P-fluviatile_contig8.14698.1|Name=mRNA_P-fluviatile_contig8.14698.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=173bp
MAKEDMAKSPKSKKTKEVNAKAVEVEAVPYEVRLKAVTAISKPMASEKQT
KKLYKLVKKAAKEKICRRGVKEVCKGVRQGRKGICIIAGDISPIDVISHM
ASYCEDQGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKDKIWDPNT
KQLFDDMTKVCIEEMSQVPTLG*
back to top

mRNA from alignment at P-fluviatile_contig8:3921034..3926837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14698.1 ID=mRNA_P-fluviatile_contig8.14698.1|Name=mRNA_P-fluviatile_contig8.14698.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5804bp|location=Sequence derived from alignment at P-fluviatile_contig8:3921034..3926837+ (Porterinema fluviatile SAG_2381)
GCACTCTGGCTTTGGGTTGACTTTGAGGCGGACACGGACCAACTACCCAC
ACAGAACTGCACAATCGAGGTGATTTTTGAAAGGTTTGCTCGCACTGTCA
TAGATGAAGCCGATTGATGGGAAGACGAGGTTAACGATCTATCTTCGGGG
TCGGTGTGTTTTACTCGAAGCAGACGCTCTCATCGCTCGCCGCTCGCCCC
TGTCGACGGCTCCACTCTCACACGCTCGAACACTTGGCAAAACATCTACA
AAGGGAGATACCACCTTCGCAGCACCATGGCGAAGGAGGATATGGCCAAG
TCTCCGAAAAGCAAGAAGACCAAGGAGGTGAACGCCAAGGCTGTCGAGGT
GGAGGCTGTGCCGTATGAGGTCCGGCTGAAGGCGGTCACAGCAATCTCCA
AGCCAATGGCGTCTGAGAAGCAGGTGTGTGCAGCGTATGCAGCAGGATAG
TTGCCTACTATTTTCCCACAAAATACTGTGGGTGGACAGTGCATTGTGTG
AGCAGTGAACAGTATCAGCCTATGCTTTCCAACGTCGACAGCCCTGCGAT
ACTTGGAACGAAAGCAGCTGCAGTGGCAGTCGGCGCTGTCTCGTGTCGTT
TGTAATGATCACACCGCCGCCTCCTTTGTTACGTTTTGTTGTCTGGAGCC
CGAGCGATGACATGCTTCCACTCCCTTCCGGTCGTTTGCCTCGTGTTTTA
CCGTCTACTCACTGTCTGCTTGGCACCAGACAAAGAAGTTGTACAAGCTG
GTCAAGAAGGCCGCCAAGGAAAAGATTTGTCGGAGAGGAGTAAAGGAGGT
AGGCCATCTGAAGACGTTGAAACACTTTTGTGCAGCCCGAATACGCGGGG
GCTCGCACTCGCCACGGCCTCTCATTGTTGGATCGAACTCCGTCTTTCTA
CCCTTGCTGTCGTGTTCACAGACAGCGAAACTCAGCAGCATGGGTCAGGT
TTCAAGGAGGACATGAAAACATGTGTTACTTGACCTGGCCTGCGTCTCAA
CTTGGACCGAGTGGTCGCTGGTTTCTGTGACTTTGCGCGCGCTGACGCGG
TCCTGTGTCGCACCCTTCCTTTTACAGCTGAGCCTCGTATCATCAAGAAT
GAGCCAAGCGCGTGCGGGTTTAAGGGAGACAACAACCCACCTCCGAAAAT
GTGCTCTGCCAAAATGCCTAATCGGTCTCGCATACTCGCCTGACTAGACT
GTGGAATACCTCACTGCAGTCTCCCCTGCTGTTGCGCCCCAGGTTGTTTC
CAATGCACGGCCAAGGGATGTTTCTACACTACTGGTATACCGCTTTTTGG
TGACGTTGCGTGTGGTATTTGCTCGACAAAGCAGGTGTGTAAGGGGGTTC
GACAAGGGAGGAAGGGTATCTGCATCATCGCTGGAGACATCTCCCCGATC
GACGTCATTTCGCACATGGCGTCGTATTGCGAAGACCAAGGGGTGAACTA
CATGTAAGAGTTGTGTAAAACGAGCTCAAATCGCCGCCAAAAAGGGGTCT
AAAGAAGGTCTGGTGACCACTCCAAGGTGACAATGCACAGCAGAGCAGCA
GGGAGTGGTTGGAGTCTCACGCACTTCCGCTCCCTACCTGAATTCACTTC
CTGCCGCTTACTGTGAAACCACCCGGGTTGCATTCGGCTGGAAACAGAAT
GAACAAGCACCCAAGGGTCTCAGTAATTTTCCGTGGCACCCGGAGTAAGC
CCCCTCGTTTTTTGCCTGCTGAGGCTGCCAAGTCAACAACTTTGTCGCCG
CTGGTGCTCGTCACACAGGCCGCCACTCTCAGGCCACCACTTGGTCTCGG
AGTTAACAGAAGGCCTCAAGCATGTCATGCCGTGCAAGCTTCTAGGACGT
GGTACCGCTCTCAATCGGAAAAGTATCGCGCCGCCACATGCGAGGACGCT
ATTAATCAGCCTCGTTGCACACAACTCCCAGCGCCAAACTTCACACGATG
GTTTCGGATCAAAGCAGTTGACGAAATCACCGAAGACCTCGCCTGAAGCG
CAGGACACAGGCGTAGTTTTATCGAAGGGTTGGGCAGATTTCGGGTCGCC
ACTACTAGGGTCTATTCAGCGAAGCGTCCTGATCACCTGTCTCGAACAAT
CACGTGCCACGATTCTGCCTCCTAGTGTTTAAAAGAAATCAGGCCCATTT
TCCTGATTTGAATATTGAGAGTCGAGGTTCGGATCGAAAATCGATCGTCT
TCCAGTATAAGGTTATGCCAGCCGATAGAGGAGCCTTCAGAGATTGTTTG
AGGGATGGGCACTTTTGTTCTCGCAAGTACAGCCGGAGCTGTTGAGATCT
CCCGACTGCGCGTATGGCGAAAGCGACTCTGAGGGAGCACCGCTGGATCG
CCATTTGTCACTAAAAACTGAAAGGAGAGGCCGGGTGGTAATCCTTGTGC
CGACCCACTTGGGCTACATCACTCCAGGAGTCGTAGCAGAGACTTAGAAC
CCTAGCATTTTGCCACAGCGATACATAGCGACGAGTGGCTCGCCTGATCC
GTTTGTCGATGGCCCCCCTTTGCTCTTATCGGGCGCCTGTGCACAGCGGT
TGCTCGACCACCTTCTCACGATGCGTGACCTCGAAGGTACACATGTTTCG
GTCTACAGTGGGGGCCACGATATAAGAGAGCACCCGTCAAGCTGAATTTT
TTCTCTTATATCCGGAATTCTCTTAGATCGAAATAAGAGAAATTCTCTTT
ATTATGTGGAGGTAATAAAAGAGAACTTCTCTAATATCGTAGCCAAATTT
GATGCGCCCGCTCACGGTGAGGGCCATGGCCTGCACCACCGTGGGAGCTT
GTTGAGGAGATGAAATGGAGATGTTTACGCCAGCTAACGCCATAACCTGG
GGCTGGCTTGATATGTTGGTGTAATCAGCAGTTAGTTTCGCAGCAAAATG
TACAAGCCGCAGACCTGGTGTTCCCGGTGTTGGTATGTATTCTGTGTGAC
CTTACAAATTTCGACGGCATGGACGCCTCACTCACCCCTACACGTTCCAG
CTCAATGCAACCCTCCATGTGCCGCATGTATTCCATCCCCAAAACACCAG
CGAGCAAAGAAGAAATGATAAATTTCCTGCGTACAAACGCGCTACAATCA
ACATTACACGCCCAGCACACCAACGCGTGCCCCTCGGCACGTCAGCCTCA
AACCCGGTGAAGTATTTACTTGAAGTCCCCCATGCACGTCTGCTTTGTTA
CCCTCGACCCGCGGGCACTCATCCATTCTAGCTTAGCCTTGCTCAGGTAG
AATGATACTTTGGACATGCCGCTCTTCTCTGCGATATCCTCGAGTTCAAC
AAACTGTGCTGCTACCTCTGAGTACGGCGGCGGCGGAAGCGGGGCCGCCG
CCTCTGAGCCCTGGTCCGTTTCGCCTTCCTTGGCCTGGTGTACCATCTCG
GCATCCCCGTCTAACCCCCCGCCTGTCTCGTGCGCCAGGTCCTCTATCAT
GTCCTCGTATATAGCTGTTTTTACTTCCTCGTCTTCCTCCAAATTCACCC
ATGCTTCCACCGCGCCGGCTGCTTGCTCCCGAATCTTGTCCGCCTGTTTC
TGCCACGCGTAGAAGGTGCCCTTACCCGTCTTGAACTCGGTCATGACTGC
GACAATGCCCTTCTCCTTCAAGGGGTTAAGGGCTCGCGCCTTTTCCGCAG
CCGTGACGCGCGTCCGCTTGTCTGCGCCGCCAGTTTTTTTGGCGACATGG
TTGCCGAGTTTCACGCCGCCCCTGTTGCCCGCTGGGCCCTTGCATTTGCT
CCCCGAGCAGTGACGCTTCGTAGGCGGGCTCTCAGCAGCCCCAGCTCTTG
AACTCTTTCGACCGTCAGAGGCTTCTTAAGAGGCTAGGCATGTGATGCAA
ACGCGCTGCAGCTCGCTGGTGCCTTTTGGGTCCGGCACGCCACAGATGCC
GTGCAGGTACCCCTTACATATCCGGCATCTGTGGTTCGTGAACCCGGGCG
CCACTGGCGTGTGGTCGGGCACACATGCGCAGCTGTTTCCCGCTGCACGG
GGCATGGTGTCTGCAGCTGTGTGCGCGTGTGGTCTGTGCCTCTTTCTATG
TGGCTATGGTTTAAGAGAAAATATCCCGGATAAGCCCGAATTTCTCTTAA
TCCGTGTTTATTAAGAGAATTTCTCTGAAATAAGCCCGAATTTCTCTTAA
ATCGATTTTGATCCGTCAAGCGAAAAGTATTCTCTTATATCCGGGCTTTC
TCTTATATGGGTGTCTCTTATATCGTGGCCCCCACTGTAATGAAGCTCTT
ACTTCGCGCGTATCGTTTTGCGTTCTTTTTGTCTTGGGTCTTGGTTTTGC
TGCACGGAACACGCGGGTACAGATACGTGCCGTCGAAGGTGGACTTGGGA
GCGGCGGCGAAGACCAAGCGGCCGACGTCTTGCGTGCTGATCACGCCGCC
GAGGGAGACCAAGGACAAAATATGGGACCCCAACACGAAACAGCTTTTCG
ACGACATGACGAAAGTCTGCATAGAGGAGATGTCGCAAGTCCCAACGTGA
GTAAATCGTTCGTTGTCTTGTTGGGCTGCTTCTTGAACGACATGTGTGTA
CGCCTCTGTGGGTGGGGTGGGGCAGGAGATGCGAGCAGAAGACAACACCG
ACAGCTATAAGTCTCCCTGTTTTGCGAAAAGTATCCTTTCCTCTCGATTT
TATGCAGAAGCCAAGGTTGTTCCGCGAAGGTTAACTTTAACACAGCAAAT
ATCCCTGTGTTGATTATGTTGTAAAAGCTGCCCGATGTTGGCGTGGTTGC
CATTTGGAAGCGCCTGCTACACTAGCTCTTTCCTGCTCGCGAAAATCGTG
ACCTCGCCCAATGTGCTGCTTGTTCTGTTGGTCGTCGATGGCATTTTAAT
TTCCGTCGTCCATATTTTTTTCGTGTCCAGCAACATCTTGCCATCCATGG
TAGTGCTCGTGTATTTTGATGTCCCCGCTCCGCGGTACACCCCCCAATTC
GGGCCAAACACATCGCGGGGCCGCTTGGACGGTGAGGGGCTTGGGGGAAA
ACCCGTCATGGATCCTTGGGTCGTGACTTGGTCGAGAGCGAAAACAACAC
ATTGATATTGGTGTTCGGAGGGATGCGGCTGGCTGCCGCTTGTAAAACCG
CGGCTTTGTTTTCATCAGGTGAATTCGTAGCTCGTCCCTGCTTCGCTGAG
TCGCCCTCCCCCATCTTTTTTGCCTACAGGGCACCTTTTCAACGCTCTCC
CCTCCAGCTCGTGCTTGGTGAAACGTGCCGCACCCACCTCCCCAAGAAGC
CCATTCTCTACAAGCGCCCAGACTGCAACTTCCTTGCCCTGCCATCCTTG
ACATACCGCAGGTTAGGCTAGGGTTGAAGTAGGCGTGGTGTGGTGGTAGG
GATCGGCCTTGGGCCCGGGGCTGGAGATAAGCTCAAGCTACGACATCAAC
AAGGACGGGCACTCACAGAGTGGGCAGGGCAAGCTCTTTGGAAGGCGCCA
TAACGACGCCCGTGCTGCGAGTGGGCTCTCCTACCTCTTGCCGATGAGAT
CAACGGGTCTGGAAGCGTGTACATTACCAGCGGCTTCGCTGTTGTGTTGA
ATCATGTTCAAAGCGGTGCACGTAGACTCCGACTGCTGTCTCCTGTGCGG
GGGCTGCCGAGCGTTTAACTTAGGAGCTTGTGCGACGAGCCGACTGGGAC
TCACGTGACGATTGCTTCGCAAAGCATTTTTCCGTGGCAACAGCTGTGAT
GCGAAATTCGATCGAGCCCCGGTGGCAACGCGTTTGAAGGTACAGGTGGG
GAGCCTTCTGGTCCCATGGTGCAGAGGCGATGGGCATTCCGCGGCATTTG
GCGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:3921034..3926837+

>mRNA_P-fluviatile_contig8.14698.1 ID=mRNA_P-fluviatile_contig8.14698.1|Name=mRNA_P-fluviatile_contig8.14698.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1038bp|location=Sequence derived from alignment at P-fluviatile_contig8:3921034..3926837+ (Porterinema fluviatile SAG_2381)
ATGGCGAAGGAGGATATGGCCAAGTCTCCGAAAAGCAAGAAGACCAAGGA
GGTGAACGCCAAGGCTGTCGAGGTGGAGGCTGTGCCGTATGAGGTCCGGC
TGAAGGCGGTCACAGCAATCTCCAAGCCAATGGCGTCTGAGAAGCAGATG
GCGAAGGAGGATATGGCCAAGTCTCCGAAAAGCAAGAAGACCAAGGAGGT
GAACGCCAAGGCTGTCGAGGTGGAGGCTGTGCCGTATGAGGTCCGGCTGA
AGGCGGTCACAGCAATCTCCAAGCCAATGGCGTCTGAGAAGCAGACAAAG
AAGTTGTACAAGCTGGTCAAGAAGGCCGCCAAGGAAAAGATTTGTCGGAG
AGGAGTAAAGGAGACAAAGAAGTTGTACAAGCTGGTCAAGAAGGCCGCCA
AGGAAAAGATTTGTCGGAGAGGAGTAAAGGAGGTGTGTAAGGGGGTTCGA
CAAGGGAGGAAGGGTATCTGCATCATCGCTGGAGACATCTCCCCGATCGA
CGTCATTTCGCACATGGCGTCGTATTGCGAAGACCAAGGGGTGAACTACA
TGTGTGTAAGGGGGTTCGACAAGGGAGGAAGGGTATCTGCATCATCGCTG
GAGACATCTCCCCGATCGACGTCATTTCGCACATGGCGTCGTATTGCGAA
GACCAAGGGGTGAACTACATATACGTGCCGTCGAAGGTGGACTTGGGAGC
GGCGGCGAAGACCAAGCGGCCGACGTCTTGCGTGCTGATCACGCCGCCGA
GGGAGACCAAGGACAAAATATGGGACCCCAACACGAAACAGCTTTTCGAC
GACATGACGAAAGTCTGCATAGAGGAGATGTCGCAAGTCCCAACATACGT
GCCGTCGAAGGTGGACTTGGGAGCGGCGGCGAAGACCAAGCGGCCGACGT
CTTGCGTGCTGATCACGCCGCCGAGGGAGACCAAGGACAAAATATGGGAC
CCCAACACGAAACAGCTTTTCGACGACATGACGAAAGTCTGCATAGAGGA
GATGTCGCAAGTCCCAACGTTAGGCTAGGTTAGGCTAG
back to top