mRNA_P-fluviatile_contig8.14688.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14688.1
Unique NamemRNA_P-fluviatile_contig8.14688.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14688.1 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.850e-46
Identity = 85/114 (74.56%), Postives = 97/114 (85.09%), Query Frame = 3 
Query:   45 MKFLGFFLVCLTAVSGFVAPS-PRLSTAVRGSSPSTPMRMGIKEDVQTAINTAAITVLTAAPAFATEGTGEPLGFENKEAVIVPLFILGVINAAFNSWSKKQPEGDFFSEYDQR 383
            MKFLGFF+VCLTAVSGFVAP+ PRLS AVR S+ +TPMRMG+KEDVQ   N A++ VLTAAPA ATEGTGEPLGFEN +AVIVPLF L  IN  FN+W+K QPEGDFF+EYD+R
Sbjct:    1 MKFLGFFVVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDER 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2S2_ECTSI1.850e-4674.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3829345..3833819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003300.1
Exons3
Model size1332
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14688.1prot_P-fluviatile_contig8.14688.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3830285..3833775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817265.4216616-UTR-P-fluviatile_contig8:3829344..38302841622817265.4216616-UTR-P-fluviatile_contig8:3829344..3830284Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3829345..3830284 -
1693571828.177744-UTR-P-fluviatile_contig8:3829344..38302841693571828.177744-UTR-P-fluviatile_contig8:3829344..3830284Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3829345..3830284 -
1622817265.4708052-UTR-P-fluviatile_contig8:3833775..38338191622817265.4708052-UTR-P-fluviatile_contig8:3833775..3833819Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3833776..3833819 -
1693571828.6484716-UTR-P-fluviatile_contig8:3833775..38338191693571828.6484716-UTR-P-fluviatile_contig8:3833775..3833819Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3833776..3833819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817265.4327543-CDS-P-fluviatile_contig8:3830284..38303291622817265.4327543-CDS-P-fluviatile_contig8:3830284..3830329Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3830285..3830329 -
1693571828.6085715-CDS-P-fluviatile_contig8:3830284..38303291693571828.6085715-CDS-P-fluviatile_contig8:3830284..3830329Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3830285..3830329 -
1622817265.4477406-CDS-P-fluviatile_contig8:3832388..38324811622817265.4477406-CDS-P-fluviatile_contig8:3832388..3832481Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3832389..3832481 -
1693571828.6252694-CDS-P-fluviatile_contig8:3832388..38324811693571828.6252694-CDS-P-fluviatile_contig8:3832388..3832481Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3832389..3832481 -
1622817265.4611177-CDS-P-fluviatile_contig8:3833565..38337751622817265.4611177-CDS-P-fluviatile_contig8:3833565..3833775Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3833566..3833775 -
1693571828.6360455-CDS-P-fluviatile_contig8:3833565..38337751693571828.6360455-CDS-P-fluviatile_contig8:3833565..3833775Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3833566..3833775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14688.1

>prot_P-fluviatile_contig8.14688.1 ID=prot_P-fluviatile_contig8.14688.1|Name=mRNA_P-fluviatile_contig8.14688.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=116bp
MKFLGFFLVCLTAVSGFVAPSPRLSTAVRGSSPSTPMRMGIKEDVQTAIN
TAAITVLTAAPAFATEGTGEPLGFENKEAVIVPLFILGVINAAFNSWSKK
QPEGDFFSEYDQRQK*
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mRNA from alignment at P-fluviatile_contig8:3829345..3833819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14688.1 ID=mRNA_P-fluviatile_contig8.14688.1|Name=mRNA_P-fluviatile_contig8.14688.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4475bp|location=Sequence derived from alignment at P-fluviatile_contig8:3829345..3833819- (Porterinema fluviatile SAG_2381)
CTGCTTCTAATCCCTGCCACGGCCAAACTCCACCCTTTTACACCATGAAG
TTCCTTGGATTCTTTTTGGTCTGTCTGACGGCAGTCAGCGGATTCGTTGC
GCCCAGCCCACGCCTGTCGACCGCCGTGCGTGGTTCGAGCCCTTCCACAC
CCATGCGCATGGGCATCAAGGAGGACGTGCAGACCGCGATCAACACCGCC
GCGATCACGGTCCTGACCGCCGCGCCTGCTTTCGCCACCGAGGGTACTGG
GGAGGTATGTGCTTGTCTCGTTGTTCTCGTTGGATGCGATATGTGTGGAG
CGTGCCATTGTGATTTCATGTTATGAGATGGGTGAGTCATGAGGTGAGAG
CTGCAATTGAAGCTCGGCAATAGCGGCACATATCCTAGAGAAAAACGTTT
GCTGACTTTCGGTCAACCCACGGATAGATCGCCCTTGCTGTATGCATCCC
ACAGATACACCCGGTTTTACGATGACGGGTGTTAGATCGACAAATCTTTC
GTCAGATAAAGGCTTCCCATTTGACCAGTCGAGTCAGCGAGTCTCTCGTC
TAATACAGGCCAACTACCTGTGGCGTGCGCGCGCGGTAGAACCCCCTGCC
TCCTTCCCCCGCGCGTGCGAAAGAGGAGAGGGTCTCATGTGGTGTGGTGT
TAAGACATATTTAACCGACTGGTTCTGCATATCGCACGATAGGCGTTCCC
TCCAGAGATCATTACACGGAGGGTTTGGTGGTACTTACCTTGAACATACT
GGGGCATGAACGAATTACGACCAACCCTCGGCGGGTGCTAGCGAGCTCGC
ATTCGCGGACACGGAGAGCGACTGAGGCGTCTTGTGTCGTCAGCGTCCGA
CTCGGATCCCCTGAGGGCTTGAGATGCGCGCGCTAAACTGCTCGAGGTTG
GCACAAGAGACTGCCGAAGAAGAAATGTCGAAGTCGCGCCGCGAGAAGTG
CATACTCCGGAGTATTTGATATTTTATGGCATCTTTTTTTCGCGGTGTGA
AATCGACATCCGTTCCTCAGGCGGCTCACCCAACTCTCCCAAGCGGTTTC
CACGCGCGCTCCTTAACTTTCATTAGGGCGTCAGCGTCGGCTGCTGTAGC
CACCGCGCTTTCCTGTGGTGTGCAATGTAGTGACCGTGACTCACTGCTCG
GGGTGTCATATTGCATCGCTGACCCGACTTCGACAGACGCAGCAAATTTT
CATCCCCCCTCCTCCGTTCGTGCCCCCAATCCTCCTGCCGGCCTTCGGGT
TATCCTGCATGCCCGTTTTGCTCGTTGCCGTGAATCTTTTGCGCACGGAC
GCGAAAAACCTGTTCGCTTTCTTCCGCGCTCCCTTCAGCCGCTCGGGTTC
GAGAACAAGGAAGCCGTTATCGTCCCGCTGTTCATCCTCGGTGTCATCAA
CGCGGCCTTCAACAGCTGGTCGAAGAAGCAGGTAGGAACTCCGACACGAA
TCGTAAACGAATCGTTTCCGTAGTCAGCCATATGTGCGATGATTTCGCAG
GACGCATTGTGTTTTGGCCAGCAGGTACATACCCTCAATGCACTAAAGTG
GAATCTCTTGAGGCGGGTTCGATCGCCGTCGTATGTGGTGCAGGTGCACA
GATGCAGGCGTGTTCTCTTCACCTTTCAACAGGCTCATGGACAAGCAGTC
GTCGAAACAAAATTGACGACAGCGTAAGCATATTGCATGTTACGATAGAT
TGAAAGGCGGTTGACCCCGGTTCGTGATTCGAAGGGTTTCCTCGACAGTT
TGCTTGGCCATGCCCACGGCTGAAGAAGGATGTTAGCCGGCATACGGTCT
GCCCGTGAAGGCGACCATAACAACTGGCAGGAAGGGGAAACCTAGCATTT
TTAGTTGCAATGTACTTTCCAGCCCTACCCTGGCAGAAGGACGCGGTTGC
ATGCATAGCATCAAGCCCGTGAATGCCTCAGCGCTGACGCCAGAAACAAC
GTGCGCGGGACCAGCATCAGTGTCGTGGACGAATCGGGTATGACGAACAG
TTCAACAAACGGAGCGGTACATTCTCGGTACCTCGATGTGCTCGTTGTAG
AGGGTCCAGCACGAAGAGTGTTTTTCGCGGATTAAGCAGACGTCGTCGGC
CATGCCTTCGATGCTCTTGGGTCGTGAAGGGATGGATTGACTCCCCCTCT
TCCTTCGGTGTGCCCCAGTGTTTCGACCGTTCACGCCTGCAAAGTTGACC
GGACCGGCGACGTTGCAGATGTAGATGTGAGCGCAGACCTCGCTTGTTTC
TCACATATTCCGAGGCACGGATTTCATGAGGTTATTGACCGCCTCTACGT
TGTTACGCGACGGTTCGCGGTGCGAAGACGTGCGCAAATGTTTTTGACCA
TCGTGTTTCCACCGCAAGGACAACCATAGAGTTGAGCGTCGAAAATCAAA
GGTATTCGCCGACGGTTTAGCACCTTCTTCATTTCTCCTTCAACTTTCAG
TCTTCTCGTTCCTGCAGAGAAAGAGCCTGACCAGGCCGGCGTACCTGACA
CTTGATTGGAGTTTTACTCCACCACAAATGTCCATTTTTCAGGTTTCTAA
AAGATTCTTGGCAGCAACCCTAATCCGAATTGTCCAGCAACACACGACCG
GCGATTCAATCGCTTCTCGAATTTTTCTGTTAAAACAAATCCATTGCGGG
CCTGTCAGCGCCGTAAGTTGACGGTACCTATGGGGAACCTGGTACTCCAC
AAAGTTTTGCTCATCCCTTTGAACATGTTCTCGTGTCAGCGCAGGAGTAG
AAACAAAATGTGCTGGAATAAAATCCCTAGTTTTTCCGCCGGCAACATCT
CGTTAGACGAACGAGTATTTGTAGGTTGGACAAGGCGGCCTCGTAGGTGC
CGCGAAGAGTCAGGAAATTTTCGCGTGCCGGGCTAAGTCAAGGCAAGAGG
AGGGGAAATGCCCGACGTTACGCTCCGCTCTTTTTCCGTGGCACAGCAAT
CCATCGCAATGGCTGTTATCCCAGTCGCTTGCTCATCGCTGGCTCAAATG
CCTGTCGCGGGAAGCCGTTGAGCAAGAGGATCTGTCGACCATAACCTTTG
CTTGTTTCCAGAGGCGTTCCTCGGGGGATGCTAGAAGAGCTAGTTCGCCT
CCATCACGAACTCGTCTTTTCAACTCGCCGCACGTGCCACCTCGAACTGA
TGTCCGAAATTGCTTGCCTAGACCGAGTAGTGGCGAACATTGCGAGCACG
ATTTAAAACAATTCGGAGTGAGGCCGCGCCTTGCGAATTAGACATTCTTT
CCAGGTGGCAGGTCCTGGTAATTTCAAGATCCCCGGTGAAGGCGAACACG
CTCGTAAACCTTTCATCCCAAGAAGGATGCGGGATCGACATATGTCGAAG
TTTGTGGTTCACCCCGCCAATAATTTTTATGTTGACACTGTTTGGGTTTT
ATGCTTTAAGGTCCTCCTGTCCGCTCCCTCTCATTTCATCTTTTGCGTGT
GCGCTTATCTCCTCTGCTTCTCTCGATTCTATCTCAACAGCCGGAGGGCG
ACTTCTTCTCCGAGTACGACCAGCGGCAAAAATAGGAGAACCGAGAGCGG
AACGATATCCACGTCACTGAGGGGCATGGAGCCAGGCAGCACCGGCCGAG
AGCTCGAGGCTTGGACAGGCCTTATTGCCTGCCGTGGCCTGATTCCGATG
TTAGCAACCGCGAGAGCAACGAGTGGGTAGCTCGTTGTCGTGTCCCCTTT
TGGGAGGGGATCGATGTTTCCCTGTGGCTCGTGGAAACTTCAGCTTGTAT
TTTTGCTTTGATGGTAGACCTGCAAATGAATCAGTTTGTGTCTGGAAGAG
TATTGGAGAGGTTCGTCAGAATTAGAAAAGATGACCGATGGCTCGACGGC
TTTGTCGCCTTTTAAGGAAGCCGCATTTTGGTTGCCGTTGATCAGCCTCG
GCACGGGGTTTGTTGACAGGCTGAAACTTGCGGTGCACTAAAGAGCGTTG
AACTGCCTCGTGTCCGCCTCGACCCTGAGTCTGTCGTGCGCGTATCAGAA
GCATCAGTTCAAGTATGTTTTGGCGGCAAGTATGAAGAGCCTGGCACAGC
TTTCACTGCGGTGAAATTTTTTGCGGCACCCCTCGGTAGACGCCTGGGAA
ATGAGGGATTCTCTCGATGGAAAACAGGGAATGTTGGATCGACGAATTCG
CACCAACGCGCAGCAAAAAGTGAAAACCTTTTTCCGTGGAATTTCGGTCG
TGATGCGCGATGTCTGCTGGTAGGTTGACACATAACCACTGTCGCCGCGC
TTTTTTGGCGGAGTGGAGTATTCAAGGTGCCGGCTTGTACTCTTGTGTGC
ATGTTGAACGTTTCACGCAATGCAATCTTGATGCGACAGCTCGCGTGTGT
AATAATGGCCGCTGCACGTGCTTTACAATGCGCCGAGGCATCATGTTTCA
GCATCTTCCCACACACAAAAGAAGTCCAAAAGCGTGTGCCTAAGGCCTTT
GCTCGCATACACAAAAACAAGGAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3829345..3833819-

>mRNA_P-fluviatile_contig8.14688.1 ID=mRNA_P-fluviatile_contig8.14688.1|Name=mRNA_P-fluviatile_contig8.14688.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=696bp|location=Sequence derived from alignment at P-fluviatile_contig8:3829345..3833819- (Porterinema fluviatile SAG_2381)
ATGAAGTTCCTTGGATTCTTTTTGGTCTGTCTGACGGCAGTCAGCGGATT
CGTTGCGCCCAGCCCACGCCTGTCGACCGCCGTGCGTGGTTCGAGCCCTT
CCACACCCATGCGCATGGGCATCAAGGAGGACGTGCAGACCGCGATCAAC
ACCGCCGCGATCACGGTCCTGACCGCCGCGCCTGCTTTCGCCACCGAGGG
TACTGGGGAGATGAAGTTCCTTGGATTCTTTTTGGTCTGTCTGACGGCAG
TCAGCGGATTCGTTGCGCCCAGCCCACGCCTGTCGACCGCCGTGCGTGGT
TCGAGCCCTTCCACACCCATGCGCATGGGCATCAAGGAGGACGTGCAGAC
CGCGATCAACACCGCCGCGATCACGGTCCTGACCGCCGCGCCTGCTTTCG
CCACCGAGGGTACTGGGGAGCCGCTCGGGTTCGAGAACAAGGAAGCCGTT
ATCGTCCCGCTGTTCATCCTCGGTGTCATCAACGCGGCCTTCAACAGCTG
GTCGAAGAAGCAGCCGCTCGGGTTCGAGAACAAGGAAGCCGTTATCGTCC
CGCTGTTCATCCTCGGTGTCATCAACGCGGCCTTCAACAGCTGGTCGAAG
AAGCAGCCGGAGGGCGACTTCTTCTCCGAGTACGACCAGCGGCAAAAATA
GCCGGAGGGCGACTTCTTCTCCGAGTACGACCAGCGGCAAAAATAG
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