mRNA_P-fluviatile_contig8.14679.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14679.1
Unique NamemRNA_P-fluviatile_contig8.14679.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14679.1 vs. uniprot
Match: A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.910e-29
Identity = 122/341 (35.78%), Postives = 146/341 (42.82%), Query Frame = 1 
Query:    4 IFDEETTKKIQDEHERDMEQAATAIGAKGARRMGLITGDGQEATTPAA------------GKGLAGKLAAASSSMFSPWRKAPKVAT--------ATAPAPXXXXXXXXXXXXXXXXXXXXASSGGTSASKTQPSSVSLPQPPVAAKESPEAPAPTQGQERPLEEPANAVQPVTPPPASELGKGSPVLPLPDTPSVATGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSVPSAVAVEAETLVATSLGSHVAVGGSKSTAVADQGVAAELVLPELKVVAFDVREPSLGAAVVGHVLFLEGSCYVWAGTEGSSAQGSLAAAVGTSFDGGMPTATPLLAG 966
            IFD  T+KKI +EH+RDME AA AIG +G   M LI G  ++  T               G  L  KL  A+S        AP  A         A APAP                    +SS  T            P P VA   SPE  APT   E P EEP+ A          ++G+  P +P  +T +                                   P + P+                              +   +E VLPELK+V+FDVREP+LGA+VVGHV+ L GSCYVWA TEGS AQGSLAAAVGT FDGGMPTATPLLAG
Sbjct:   20 IFDAATSKKIHEEHQRDMEDAAKAIGPRG---MALIRGLERQTMTATTRITQSLTAGSLHGGRLLRKLTPATSFFSRKKTPAPTPAAEPVAGPKPAAAPAPTAPTLEQLLLAELHMATNAQSSSNATLE----------PPPTVAESGSPETAAPT---ETPSEEPSAADD-------VDVGRKPPPVPASETAAAGEPEPARRLDAEGKGSVETARFTSRESAEPAPSPPAAAPT------------------------------EDAGSEAVLPELKIVSFDVREPTLGASVVGHVVVLAGSCYVWATTEGSVAQGSLAAAVGTRFDGGMPTATPLLAG 307
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BLAST of mRNA_P-fluviatile_contig8.14679.1 vs. uniprot
Match: D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 6.530e-29
Identity = 139/335 (41.49%), Postives = 163/335 (48.66%), Query Frame = 1 
Query:    4 IFDEETTKKIQDEHERDMEQAATAIGAKGARRMGLITGDGQEATTPAA------------GKGLAGKLAAASSSMFSPWRKAPKVATATA-PAPXXXXXXXXXXXXXXXXXXXXASSGGTSASKTQPSSVSLPQPPVAAKESPEAPAPTQGQERPLEEPANAVQPVTPPPASELGK-GSPVLPLPDTPSVATGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSVPSAVAVEAETLVATSLGSHVAVGGSKSTAVADQGVAAELVLPELKVVAFDVREPSLGAAVVGHVLFLEGSCYVWAGTEGSSAQGSLAAAVGTSFDGGMPTATPLLAG 966
            IFD  T+KKI +EH+RDME AA AIG +G   M LI G  ++ TT               G  L  KLA A+S +FS  RK P   T  A P                           T+A  +  +++ LP P VA   SPE  APT+              P  PP A ++G  G    P+P     A+  XXXXXXXXXXXX                  P    S    E                 S   A   +   +E VLPELKVV+FDVREP+LGA+VVGHV+ L GSCYVWA TEGS AQGSLAAAVGT FDGGMPTATPLLAG
Sbjct:    6 IFDAATSKKIHEEHQRDMEDAAKAIGPRG---MALIRGLEKQTTTATTRITQSLTAGSLHGGRLLRKLAPATS-LFS--RKKPPAPTPAAEPLAGSEPAAQAPTAPTLEQLLLAEIHMATNAQPSSAATLELP-PAVAESGSPETAAPTE------------TTPEEPPAADDVGDVGRKPPPVP-----ASXXXXXXXXXXXXXXGEPEPARRLKAEGKGSVEPARSASREPAEP--------------APSPPAAAPTKDAGSEAVLPELKVVSFDVREPTLGASVVGHVVVLAGSCYVWAATEGSVAQGSLAAAVGTRFDGGMPTATPLLAG 302
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9L5_9PHAE1.910e-2935.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2Q5_ECTSI6.530e-2941.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3754083..3755440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size967
Cds size966
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.614834-CDS-P-fluviatile_contig8:3754082..37549601622817264.614834-CDS-P-fluviatile_contig8:3754082..3754960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3754083..3754960 -
1693571823.2817035-CDS-P-fluviatile_contig8:3754082..37549601693571823.2817035-CDS-P-fluviatile_contig8:3754082..3754960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3754083..3754960 -
1622817264.6258342-CDS-P-fluviatile_contig8:3755352..37554401622817264.6258342-CDS-P-fluviatile_contig8:3755352..3755440Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3755353..3755440 -
1693571823.2904737-CDS-P-fluviatile_contig8:3755352..37554401693571823.2904737-CDS-P-fluviatile_contig8:3755352..3755440Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3755353..3755440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14679.1prot_P-fluviatile_contig8.14679.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3754083..3755440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14679.1

>prot_P-fluviatile_contig8.14679.1 ID=prot_P-fluviatile_contig8.14679.1|Name=mRNA_P-fluviatile_contig8.14679.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=322bp
EIFDEETTKKIQDEHERDMEQAATAIGAKGARRMGLITGDGQEATTPAAG
KGLAGKLAAASSSMFSPWRKAPKVATATAPAPAAVPAPAPVPATAPVPKT
ATASSGGTSASKTQPSSVSLPQPPVAAKESPEAPAPTQGQERPLEEPANA
VQPVTPPPASELGKGSPVLPLPDTPSVATGNPAAASGEQSAGKEQPSAGA
EQPPPGTAEAAPTSVPSAVAVEAETLVATSLGSHVAVGGSKSTAVADQGV
AAELVLPELKVVAFDVREPSLGAAVVGHVLFLEGSCYVWAGTEGSSAQGS
LAAAVGTSFDGGMPTATPLLAG
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mRNA from alignment at P-fluviatile_contig8:3754083..3755440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14679.1 ID=mRNA_P-fluviatile_contig8.14679.1|Name=mRNA_P-fluviatile_contig8.14679.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1358bp|location=Sequence derived from alignment at P-fluviatile_contig8:3754083..3755440- (Porterinema fluviatile SAG_2381)
GAAATATTCGACGAAGAAACCACGAAGAAGATCCAGGACGAGCACGAAAG
GGACATGGAGCAAGCAGCAACGGCTATCGGTGCGAAAGGTAGACAGCTGG
GGTCACTTGTAGACAAGATGTGCTCTGACCGCAAACCTCTAACTGTTGTG
CACACTGCTTCACCACACGAAACGCTGGTAGTGGGATTAGAGGCGGTGGG
GCAAGCAGATGTCGCCGTATGCCTACCCTCCCGAAGTTGTGTATCTCATT
TTCCCTCCTGCCGCAGCCGTTTTTTTCGGAGGCAGTTCTACCCGATCGCG
GTACATTGGACAGCCAGCGTAGGCACCGGTGGCACACACATTGGCGTTGC
TGTTTGGGAGGAACACCATGCACCCCCCCGCGCACGAGATACATGAACGG
CGTGAACATCTCCCATCTCGCGTGGAACTGCTTCATTGAGCTGTGCGTTG
TGCAATCCTCTGCAACCTTTGGCCGATCAGGTGCTCGAAGGATGGGCCTC
ATAACGGGAGACGGGCAAGAGGCAACAACACCGGCGGCTGGCAAGGGGCT
GGCGGGCAAGCTGGCAGCGGCATCTTCTTCCATGTTTTCTCCATGGAGAA
AGGCGCCAAAAGTAGCAACAGCAACAGCTCCAGCGCCTGCAGCGGTACCA
GCACCAGCACCAGTGCCTGCAACAGCTCCGGTTCCAAAAACGGCAACAGC
TTCATCAGGGGGGACAAGCGCGAGCAAGACGCAACCTTCCAGCGTATCCC
TTCCACAGCCGCCAGTCGCAGCAAAGGAGAGCCCTGAAGCCCCAGCGCCG
ACACAGGGACAGGAACGGCCGCTGGAGGAACCTGCTAACGCCGTTCAGCC
GGTCACACCGCCGCCAGCCTCCGAGTTGGGGAAAGGGTCGCCCGTGTTGC
CCCTGCCGGACACACCATCGGTGGCGACAGGAAATCCAGCGGCGGCATCA
GGAGAACAATCGGCGGGCAAAGAACAGCCATCGGCGGGGGCAGAACAACC
ACCGCCTGGAACGGCGGAGGCAGCACCAACATCGGTGCCCAGCGCGGTGG
CGGTGGAGGCAGAAACATTAGTGGCGACGAGCCTAGGGTCACACGTTGCG
GTGGGCGGCTCCAAGTCGACTGCCGTGGCAGACCAAGGCGTAGCAGCAGA
GTTGGTGCTCCCGGAGCTCAAGGTGGTGGCGTTCGACGTGCGCGAACCGT
CTCTCGGCGCGGCCGTGGTGGGCCACGTGCTTTTCCTGGAAGGATCCTGC
TACGTCTGGGCGGGGACGGAGGGCTCGTCGGCACAGGGATCTCTGGCGGC
GGCGGTGGGGACGAGTTTCGATGGAGGCATGCCGACGGCGACTCCGTTGC
TTGCCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3754083..3755440-

>mRNA_P-fluviatile_contig8.14679.1 ID=mRNA_P-fluviatile_contig8.14679.1|Name=mRNA_P-fluviatile_contig8.14679.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1932bp|location=Sequence derived from alignment at P-fluviatile_contig8:3754083..3755440- (Porterinema fluviatile SAG_2381)
GAAATATTCGACGAAGAAACCACGAAGAAGATCCAGGACGAGCACGAAAG
GGACATGGAGCAAGCAGCAACGGCTATCGGTGCGAAAGGAAATATTCGAC
GAAGAAACCACGAAGAAGATCCAGGACGAGCACGAAAGGGACATGGAGCA
AGCAGCAACGGCTATCGGTGCGAAAGGTGCTCGAAGGATGGGCCTCATAA
CGGGAGACGGGCAAGAGGCAACAACACCGGCGGCTGGCAAGGGGCTGGCG
GGCAAGCTGGCAGCGGCATCTTCTTCCATGTTTTCTCCATGGAGAAAGGC
GCCAAAAGTAGCAACAGCAACAGCTCCAGCGCCTGCAGCGGTACCAGCAC
CAGCACCAGTGCCTGCAACAGCTCCGGTTCCAAAAACGGCAACAGCTTCA
TCAGGGGGGACAAGCGCGAGCAAGACGCAACCTTCCAGCGTATCCCTTCC
ACAGCCGCCAGTCGCAGCAAAGGAGAGCCCTGAAGCCCCAGCGCCGACAC
AGGGACAGGAACGGCCGCTGGAGGAACCTGCTAACGCCGTTCAGCCGGTC
ACACCGCCGCCAGCCTCCGAGTTGGGGAAAGGGTCGCCCGTGTTGCCCCT
GCCGGACACACCATCGGTGGCGACAGGAAATCCAGCGGCGGCATCAGGAG
AACAATCGGCGGGCAAAGAACAGCCATCGGCGGGGGCAGAACAACCACCG
CCTGGAACGGCGGAGGCAGCACCAACATCGGTGCCCAGCGCGGTGGCGGT
GGAGGCAGAAACATTAGTGGCGACGAGCCTAGGGTCACACGTTGCGGTGG
GCGGCTCCAAGTCGACTGCCGTGGCAGACCAAGGCGTAGCAGCAGAGTTG
GTGCTCCCGGAGCTCAAGGTGGTGGCGTTCGACGTGCGCGAACCGTCTCT
CGGCGCGGCCGTGGTGGGCCACGTGCTTTTCCTGGAAGGATCCTGCTACG
TCTGGGCGGGGACGGAGGGCTCGTCGGCACAGGGATCTCTGGCGGCGGCG
GTGGGGACGAGTTTCGATGGAGGCATGCCGACGGCGACTCCGTTGCTTGC
CGGGGTGCTCGAAGGATGGGCCTCATAACGGGAGACGGGCAAGAGGCAAC
AACACCGGCGGCTGGCAAGGGGCTGGCGGGCAAGCTGGCAGCGGCATCTT
CTTCCATGTTTTCTCCATGGAGAAAGGCGCCAAAAGTAGCAACAGCAACA
GCTCCAGCGCCTGCAGCGGTACCAGCACCAGCACCAGTGCCTGCAACAGC
TCCGGTTCCAAAAACGGCAACAGCTTCATCAGGGGGGACAAGCGCGAGCA
AGACGCAACCTTCCAGCGTATCCCTTCCACAGCCGCCAGTCGCAGCAAAG
GAGAGCCCTGAAGCCCCAGCGCCGACACAGGGACAGGAACGGCCGCTGGA
GGAACCTGCTAACGCCGTTCAGCCGGTCACACCGCCGCCAGCCTCCGAGT
TGGGGAAAGGGTCGCCCGTGTTGCCCCTGCCGGACACACCATCGGTGGCG
ACAGGAAATCCAGCGGCGGCATCAGGAGAACAATCGGCGGGCAAAGAACA
GCCATCGGCGGGGGCAGAACAACCACCGCCTGGAACGGCGGAGGCAGCAC
CAACATCGGTGCCCAGCGCGGTGGCGGTGGAGGCAGAAACATTAGTGGCG
ACGAGCCTAGGGTCACACGTTGCGGTGGGCGGCTCCAAGTCGACTGCCGT
GGCAGACCAAGGCGTAGCAGCAGAGTTGGTGCTCCCGGAGCTCAAGGTGG
TGGCGTTCGACGTGCGCGAACCGTCTCTCGGCGCGGCCGTGGTGGGCCAC
GTGCTTTTCCTGGAAGGATCCTGCTACGTCTGGGCGGGGACGGAGGGCTC
GTCGGCACAGGGATCTCTGGCGGCGGCGGTGGGGACGAGTTTCGATGGAG
GCATGCCGACGGCGACTCCGTTGCTTGCCGGG
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