mRNA_P-fluviatile_contig8.14658.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14658.1
Unique NamemRNA_P-fluviatile_contig8.14658.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: A0A6H5LM37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM37_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 8.880e-75
Identity = 145/224 (64.73%), Postives = 167/224 (74.55%), Query Frame = 1
Query: 1291 MATFAQQS---------SPEEVLKKDLLMLEAQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALHELRAARQT---RTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLRRERVGGDG 1926
            M+TF  Q          SPEE L+K+L++L+AQRDALEL  +AIA EL S GANGEAPVG+KG LVD++G+P AG DL NVR KRHRFNCIQTDHKAVMS+IE SLHALH+ R AR T      S TA +PPA +             AAA +S++PIAKVNQVSEGSPA+ AGL VGDLVLRFG +DISHPKGLGG+VDVVREKEGQEVPVTVLR   V G+G
Sbjct:    1 MSTFPDQPQQPQQQAIPSPEEALRKELVVLQAQRDALELEADAIASELKSPGANGEAPVGVKGALVDADGFPLAGFDLFNVREKRHRFNCIQTDHKAVMSRIEKSLHALHDARLARPTPLPTAFSVTAATPPASSLIGMDSAA-----AAADMSLAPIAKVNQVSEGSPASAAGLAVGDLVLRFGHVDISHPKGLGGVVDVVREKEGQEVPVTVLRTTSVSGEG 219          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: A0A7S3HBQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBQ7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 8.360e-31
Identity = 80/205 (39.02%), Postives = 118/205 (57.56%), Query Frame = 1
Query: 1291 MATFAQQSSPEEVLKKDLLMLEAQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALH-ELRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLR 1902
            M   ++  S  E+L+  L  L AQRDALE   +AI  EL S G NGE P G+K P VD+EGYPR  +D++NV+ KR R   I TD+KA+M +IE ++  LH EL               PP P +   A   T  +   A L   P+AK++++  GSPAA AG+++ DL+++FG++  +    L  +V++V +   Q +P+ VLR
Sbjct:    1 MEFTSESKSRMEILRGTLNNLSAQRDALEAEADAIHSELTSPGINGEPPAGIKTPFVDAEGYPRGDIDIINVKDKRRRLAEINTDYKALMKQIEQTMLQLHNEL---------------PPVPTSVPTASENTDSNTTVAPLK--PMAKLDEIFPGSPAATAGIQLNDLLMQFGTVTSNTNNFLKSIVELVGKNVNQPIPMVVLR 188          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: A0A834CI79_ORYME (26S proteasome non-ATPase regulatory subunit 9 n=3 Tax=Oryzias TaxID=8089 RepID=A0A834CI79_ORYME)

HSP 1 Score: 118 bits (296), Expect = 1.440e-26
Identity = 72/203 (35.47%), Postives = 111/203 (54.68%), Query Frame = 1
Query: 1300 FAQQSSPE--EVLKKDLLMLEAQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALHELRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLR 1902
              +++SPE   +   D+  L  ++D +E    A    L   G      VG++GPLVD+EGYPRA V+L  +R+ RH  +C+Q DHKA+M++IE +LH LH    A++ +  + T+  P       P                 P A+V+ V+EGSPA+ AGL VGD V+ FGS++  + + L  +  VV+  EG+ + V V+R
Sbjct:    3 MTEENSPEMSNITIDDVNALIKKKDEIEEQIKAYFDVLEDQG------VGIEGPLVDAEGYPRADVNLYQIRTARHNISCLQNDHKAIMAEIEEALHKLHACEKAKREQDQAETSEEPMEQEVTLPP----------------PFARVDTVTEGSPASAAGLRVGDEVIEFGSVNTKNFQNLQNIASVVQHSEGKALRVGVIR 183          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: A0A7S2WPH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPH7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.410e-26
Identity = 81/216 (37.50%), Postives = 113/216 (52.31%), Query Frame = 1
Query: 1330 LKKDLLMLEAQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALH-----------------------ELRAAR-QTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLRR 1905
            L+K LL L+ +R ++E    AI  EL S G NG    G+  PLVD EG+PRA +D+ NVR KRHR  C++TDH  VM +IE SLHALH                       E+ + R Q    S+TA      A+  P    ++P   A      P A++ +V+ GSP+++ G+  GD +L FG++   + + L GL D V    GQEV V V R+
Sbjct:   18 LRKALLDLDKRRASIEEEAQAIEEELESPGPNGAPCPGVHSPLVDQEGFPRADIDVYNVRHKRHRLACLRTDHSTVMREIERSLHALHAATTGGVGGTEEPLDIPGPHGEAEIGSGRNQASRGSNTAPEVSGTASSSPQLRQSSPAFIA------PFARIGEVTGGSPSSLGGIREGDELLEFGTVTAHNHRDLHGLADFVAGHVGQEVHVVVRRQ 227          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: UPI0019555146 (26S proteasome non-ATPase regulatory subunit 9 isoform X1 n=3 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019555146)

HSP 1 Score: 116 bits (290), Expect = 1.010e-25
Identity = 74/193 (38.34%), Postives = 106/193 (54.92%), Query Frame = 1
Query: 1327 VLKKDLLMLEAQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALHELRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMS-PIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLR 1902
            V ++D+ +L  ++D +E    A    L +     +  VG+ GPLVD EG+PRA VDL  VRS RH  +C+Q DHKAVM +IE +LH LH                   A A  R  +  T  + +  T+S+S P A V+ V++GSPA  AGL VGD ++ FGS+   + + L  +  VV+  EG+ + V VLR
Sbjct:   14 VAERDVRLLMKRKDEIEEQIKAYYDMLQTKPFLQQEGVGMDGPLVDVEGFPRADVDLYKVRSARHSISCLQNDHKAVMVEIEEALHTLH-------------------ATARVREGKDETKMEASGQTVSLSSPFALVDTVTQGSPAFQAGLRVGDEIMEFGSVKTQNFRNLRDIASVVQHSEGKSLRVGVLR 187          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: A0A2I4BYJ6_9TELE (26S proteasome non-ATPase regulatory subunit 9 n=3 Tax=Rivulidae TaxID=28771 RepID=A0A2I4BYJ6_9TELE)

HSP 1 Score: 114 bits (286), Expect = 3.950e-25
Identity = 72/201 (35.82%), Postives = 111/201 (55.22%), Query Frame = 1
Query: 1306 QQSSPE--EVLKKDLLMLEAQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALHELRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLR 1902
            +++SPE  EV   D+  L  ++D +E    A    L   G      VG++GPLVD EGYPRA V+L  +R+ RH  +C+Q DHKA+M++IE +LH LH    A++ + ++    +     T  P                 P A+V+ V+EGSPA+ AGL VGD ++ FGS++  + + L  +  VV+  EG+ + V V+R
Sbjct:   15 RENSPEGSEVTMDDVKNLIKKKDEIEEQIKAYYDVLEDQG------VGVEGPLVDEEGYPRADVNLYQIRTARHNISCLQNDHKAIMAEIEEALHKLHARDKAKREQDATEAQEAMEQQITLPP-----------------PFARVDAVTEGSPASGAGLRVGDEIIEFGSVNTGNFQNLQNIASVVQHSEGKPLRVGVIR 192          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: H2LN00_ORYLA (26S proteasome non-ATPase regulatory subunit 9 n=7 Tax=Oryzias TaxID=8089 RepID=H2LN00_ORYLA)

HSP 1 Score: 114 bits (285), Expect = 4.260e-25
Identity = 62/155 (40.00%), Postives = 93/155 (60.00%), Query Frame = 1
Query: 1438 VGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALHELRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLR 1902
            VG++GPLVD+EGYPRA V+L  +R+ RH  +C+Q DHKA+M++IE +LH LH    A++ +  +     P       P                 P A+V+ V+EGSPA+ AGL+VGD V+ FGS++  + + L  +  VV+  EG+ + VTV+R
Sbjct:   45 VGVEGPLVDAEGYPRADVNLYQIRTARHNISCLQNDHKAIMAEIEEALHKLHAREKAKREQDQAEATEEPMEQQVTLPP----------------PFAQVDTVTEGSPASAAGLKVGDEVIEFGSVNTKNFQNLQNIASVVQHSEGKALRVTVVR 183          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: UPI001455599A (26S proteasome non-ATPase regulatory subunit 9-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455599A)

HSP 1 Score: 114 bits (284), Expect = 4.450e-25
Identity = 73/182 (40.11%), Postives = 100/182 (54.95%), Query Frame = 1
Query: 1357 AQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALHELRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLR 1902
            A++D++E     +   L S G      VG+ GPL+DSEGYPR  +D+ + R+ RHR  C+Q DHKA+M  IE SLH LH     RQ R    +  +  A               + A +++ P A ++ VSEGSPAA AGL VGD ++ FGSI  S+ K L  +  VVR  +G+ V V  LR
Sbjct:   14 AEKDSIEREIKELYDVLESQGN-----VGMDGPLIDSEGYPRNDIDVYSARTARHRIICLQNDHKALMVNIENSLHDLHSYE--RQQREQGESLPTNGA---------------STAAIALIPFASIDLVSEGSPAANAGLLVGDEIIEFGSICTSNFKSLQDIATVVRHSQGRSVRVVTLR 173          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: UPI0003F0E6C4 (26S proteasome non-ATPase regulatory subunit 9 isoform X1 n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0E6C4)

HSP 1 Score: 113 bits (283), Expect = 9.440e-25
Identity = 75/189 (39.68%), Postives = 105/189 (55.56%), Query Frame = 1
Query: 1339 DLLMLEAQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALHELRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLRR 1905
            D+  L  ++D +E    A    L S     +  VG+  PLVD E YPRA VDL  VR+ RH   C+Q DHKA+M ++E +LH LH     +Q R     A +    A+CRP +    P  A A       AKVN +S GSPA+ AGL+V D ++ FGS++  + + L  + DVV+  EG+ + VTV+RR
Sbjct:   22 DVKELMRRKDEIEAQIKANYDVLES-----QKGVGMNEPLVDGEDYPRADVDLYQVRTARHNIVCLQNDHKAIMKQVEEALHQLHARDKEKQAR---DMAEAQSEAASCRPDQ---GPHPAQA------FAKVNSISPGSPASTAGLQVDDEIVEFGSVNTQNFQSLQNVGDVVQHSEGKPLNVTVIRR 193          
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Match: Q6GLK7_XENLA (26S proteasome non-ATPase regulatory subunit 9 n=3 Tax=Xenopus TaxID=262014 RepID=Q6GLK7_XENLA)

HSP 1 Score: 112 bits (281), Expect = 1.310e-24
Identity = 70/205 (34.15%), Postives = 115/205 (56.10%), Query Frame = 1
Query: 1303 AQQSSPEEVLKKDLLMLEAQRDALELXXNAIAGELNSSGANGEAPVGLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHALHE-LRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVNQVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPVTVLRRERV 1914
            A++    +V  +D+ +L +++D +E    A+   L       +  +G+ GPLVD EGYPRA VD+  VR+ RH   C+Q DHKA+M KIE SLH LH   +  R+    +   +S  A              + AA       AKV+ V+ GSPA+++GL+VGD ++ FG+++  + + L  + +VV+  EG+ + V+V+R E++
Sbjct:    4 AEELCESDVTVRDVQLLISKKDEMEAEIKALYDLLQD-----QKGIGMDGPLVDREGYPRADVDIYQVRTARHNIICLQNDHKAIMKKIEQSLHILHAGEKEKREVEAQAEALQSHQA--------------LPAA------FAKVDVVTPGSPASMSGLQVGDEIIAFGTVNTRNFQSLQNIAEVVQHSEGKPLSVSVVRNEKL 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LM37_9PHAE8.880e-7564.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HBQ7_9STRA8.360e-3139.02Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A834CI79_ORYME1.440e-2635.4726S proteasome non-ATPase regulatory subunit 9 n=3... [more]
A0A7S2WPH7_9STRA4.410e-2637.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI00195551461.010e-2538.3426S proteasome non-ATPase regulatory subunit 9 iso... [more]
A0A2I4BYJ6_9TELE3.950e-2535.8226S proteasome non-ATPase regulatory subunit 9 n=3... [more]
H2LN00_ORYLA4.260e-2540.0026S proteasome non-ATPase regulatory subunit 9 n=7... [more]
UPI001455599A4.450e-2540.1126S proteasome non-ATPase regulatory subunit 9-lik... [more]
UPI0003F0E6C49.440e-2539.6826S proteasome non-ATPase regulatory subunit 9 iso... [more]
Q6GLK7_XENLA1.310e-2434.1526S proteasome non-ATPase regulatory subunit 9 n=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3597632..3601159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.5
Seed ortholog evalue3.3e-67
Seed eggNOG ortholog2880.D8LKY7
Preferred nameNAS2
KEGG koko:K06693,ko:K07936
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009987,GO:0016043,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030163,GO:0032991,GO:0034622,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0065003,GO:0070682,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.26S Proteasome non-ATPase regulatory subunit
EggNOG OGsCOG0265@1,KOG3129@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko03051,ko04031,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size2596
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14658.1prot_P-fluviatile_contig8.14658.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3598299..3599869 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.1939046-UTR-P-fluviatile_contig8:3597631..35982981622817262.1939046-UTR-P-fluviatile_contig8:3597631..3598298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3597632..3598298 -
1693571792.5918608-UTR-P-fluviatile_contig8:3597631..35982981693571792.5918608-UTR-P-fluviatile_contig8:3597631..3598298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3597632..3598298 -
1622817262.2371762-UTR-P-fluviatile_contig8:3599869..36011591622817262.2371762-UTR-P-fluviatile_contig8:3599869..3601159Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3599870..3601159 -
1693571792.6280544-UTR-P-fluviatile_contig8:3599869..36011591693571792.6280544-UTR-P-fluviatile_contig8:3599869..3601159Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3599870..3601159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.2042227-CDS-P-fluviatile_contig8:3598298..35984841622817262.2042227-CDS-P-fluviatile_contig8:3598298..3598484Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3598299..3598484 -
1693571792.604591-CDS-P-fluviatile_contig8:3598298..35984841693571792.604591-CDS-P-fluviatile_contig8:3598298..3598484Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3598299..3598484 -
1622817262.2144723-CDS-P-fluviatile_contig8:3599011..35992311622817262.2144723-CDS-P-fluviatile_contig8:3599011..3599231Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3599012..3599231 -
1693571792.6123357-CDS-P-fluviatile_contig8:3599011..35992311693571792.6123357-CDS-P-fluviatile_contig8:3599011..3599231Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3599012..3599231 -
1622817262.226522-CDS-P-fluviatile_contig8:3599636..35998691622817262.226522-CDS-P-fluviatile_contig8:3599636..3599869Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3599637..3599869 -
1693571792.6202857-CDS-P-fluviatile_contig8:3599636..35998691693571792.6202857-CDS-P-fluviatile_contig8:3599636..3599869Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3599637..3599869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14658.1

>prot_P-fluviatile_contig8.14658.1 ID=prot_P-fluviatile_contig8.14658.1|Name=mRNA_P-fluviatile_contig8.14658.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=213bp
MATFAQQSSPEEVLKKDLLMLEAQRDALELEANAIAGELNSSGANGEAPV
GLKGPLVDSEGYPRAGVDLLNVRSKRHRFNCIQTDHKAVMSKIETSLHAL
HELRAARQTRTSSSTARSPPAPATCRPARTTTAPDIAAATLSMSPIAKVN
QVSEGSPAAIAGLEVGDLVLRFGSIDISHPKGLGGLVDVVREKEGQEVPV
TVLRRERVGGDG*
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mRNA from alignment at P-fluviatile_contig8:3597632..3601159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14658.1 ID=mRNA_P-fluviatile_contig8.14658.1|Name=mRNA_P-fluviatile_contig8.14658.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3528bp|location=Sequence derived from alignment at P-fluviatile_contig8:3597632..3601159- (Porterinema fluviatile SAG_2381)
CAGCAAACAGGGGGGAGGGAAAGGCCGGAGGGTTTACCAGGCGCACTGTT TCCGAGGAGGTTTTGCTAAACGCGAAGTAAAGGTGTGCGATATGAAACAT CTTGTTTTCTCAAGCTGTCGAGAGCAAGAGCGTCAAGGTAGACAAGGTTC AGCACGCCGTGTCCTTCGGATCACGCTGCTAGGGCGCTTTGAACTGAGGC GAGTTTTGCAGCATTGGATGCGTTTGCGCTCAACTTCACCGAAGAGCGAA CCCTGTTTACACTTCGTAGGAAATGGCAGCCAGTGAAAAGCACGGTTGGC TGGGCCAGCCCTACCGAGCGGACTCTCGTCCGTTGAGTTTGTTGAGCTCG CACACACACCTGAAGGCTTCCTCCTGTCCCATGTCGCCTACCGTTATTTA TAGCCTTGTACTGTGACTAACAGAGGACGCGGGCGCACCTCCGCACTGCT GTTGCTTTCGTCCATTCTTGTGATGCACGGTGGAGGCTTGCTCAAGACTT TTCGTCGCCTTTCGGTAACCTCGCGGGGAAGACAGCCATACGCTCTCACA CGATCTCTCGAGGATGTTTCACACTGCTGAGAATCTTGCACGCCACCAGT CGCTGTACAGCTAGCTGCTGTACAGGTAAACTGTTGTTGCCAACAGGAGT GGAAGTGAAATGCTTGAAATGTGAAAGAGATCCTGGCGTCACTACTGATG ATTGCGGTGAAATCACTCTTTGACTGTTGTTAGGGTCGGAAGGTTTATTC CTCCCGGGTTCCCTTCACCCAATCTCTAGCGAGAGGCTGTATGTAGGGGG AGGTTGTTGGATCGGCACCAAAATCTCAAAAGATTGAAGATTGAATCCCC GTCTCGTTGGGCGTCGCGCTCGGGGGTTGACGCCGGATCTCGCCATCCAT CCCACACTTTCTTTGGGCGACACATCAGCAACGACAGTTTTTCCCACGGG TCCCTCGCGACCCTATTTTGGATATCGACAGAGCAGTGCATTCACAGAAG GGTGACTACCAGCGGGCCCTGAAACGGAGGTTTTTGGAATGGGCGATATA TAGAGAGCTTCCCAAAACGTTCGATCGGCGCGTAAGATCTGCCCAGCAAT GGACAATCGATCGTTGCAAAGGTCTCAAGAGAGATACGATGTGCGCGGTC GCATCGGGGTGAGCTGGTCTCCGCCCCTTCCGGGGCTGGGGTTCGCCGAC TGTAGACTAACCTGTGCGTGTTCGCTTCAACCTCGAACCTGACCATAGGA CATCACTACTAAGCATCCGGCGCGCGCTCTGCCAGCAAGCATGGCCACCT TTGCCCAGCAATCGTCTCCGGAGGAGGTCTTGAAGAAGGACCTCCTCATG CTGGAGGCGCAGAGGGACGCCCTGGAGCTAGAGGCGAACGCGATCGCCGG CGAGCTCAATTCGTCTGGTGCCAACGGGGAGGCTCCCGTGGGGTTGAAGG GCCCGCTCGTGGATTCCGAGGGATATCCTCGTGCAGGAGTCGACCTTCTT AACGTCCGCTCAAAGAGACATCGGTAGGATTGAACGATATCCAATCCCCT TGCTGCCGCGTGTATGTGTTGCACGTTTGCCCTGTAGAGGGGATTACACT CCTTCGGCTTTGGATGCCAATCTGCGTGTTGCAGCTGTGGACAGCGTCCC TTGTGTGCTGCGGATGCCATCGCCTTCTTCTCGCCTGCTTTCCAGCAGAT TTCTTCCGTGGCTTCGCCGATAAACGGGGACCAGTCTCCATGTTTTGCCT CGCCCTGCGTGTGCCAAGGACATGCACGTAGGACCTTACCGTCGCGTGTG CAGGTAGGCTGGAGAATCTGAACGAGTCGTACCTCTCCCACACGTTTGCA CACGGGCACCCTCCGCTCTCTCTTCCTCTTTCCATCGGCACGATTCTCAC GCATTCTCTCACGCCACTCATTGCCCAGATTCAACTGCATCCAGACAGAC CACAAGGCCGTGATGAGCAAGATCGAAACGTCCCTGCACGCGTTGCACGA ATTGAGGGCGGCAAGGCAAACACGGACGTCGTCGTCAACAGCACGATCAC CTCCTGCGCCTGCCACTTGTCGGCCGGCACGTACGACAACGGCCCCCGAT ATTGCCGCCGCCACTCTGTCCATGTCGCCGATCGCGAAGGTTAACCAGGT GCGGTCTACGGAACTGAGGCGCACCGAGAAGACGGACAGCTGGCTTCGAT CTCAATTTTTTTATCGATGCATTTTTCGGCCGAGCACGAGCAACGCCATG ACTAGGCGCGGGAGTCGAATAAAATGAACTGACGTACGATCCGCTAGTCA GTCTCCTTGGGCGGGGTTCTTGCAAGCGCACGAACAATTTGACAAAAAAA AAAAACTGCAGACGCCGTCCGGCAACACACAGTGAACTTGCCACCGCATT GTGGTAGAGGTGAAGGGAGCGTCCAACGCTTTTTTTCCGGCAGGAGGCGG AAGAAGGCTTGCTTGGTTTGTTTGCCGCAAGTCAACATTCGAGTATGACT GCTGGGATTAGGGTATGCGCCGACGCCACAAATGCTCGTTCCACTCTCTC GGGTGCTCTAGGCCATCTCGACACCCACCCCAGGGTTTTCGTCAAGTGCA ATAACTGCCTCGAGAGCGACGGCTTCACTTTGCCCCACTAGCGGCTCTGC TGCCTTCGTCGGTTGATGCGTCCAGGTGTCGGAAGGCTCCCCCGCCGCCA TCGCGGGGCTGGAGGTAGGCGATCTCGTCCTGCGCTTCGGAAGCATCGAT ATCTCGCACCCCAAGGGCCTGGGCGGTCTGGTGGACGTCGTCCGGGAGAA GGAGGGGCAAGAGGTGCCCGTGACGGTGCTCAGGAGAGAACGGGTGGGCG GGGACGGGTGAAGGATTTGACGCTCGTGCCCAAGACCTGGAGCGGCAGGG GCCTCCTCGGCGTGCATTTGCTTCCTCCGTGATAGATTTGCTCGTTCTGC GCACGGGCGTGTTTGTGTGTATGGATTGTGTTCGTCAACCGAAACGGCAA ACATTTGTCGGAACAAGTCGTCATTGGCGGCTTGCTAGTGTCCAGGGAGA AACCAGACGAAGGAGAGTGGCCAGATGGTAGCCTCGGAAAACAGCACGTC ACGTTGCAAGTCACTCCGGTTTGATGGCTGTTGGCGGCTCTTTTCCTGTG TGTGTTACAAGACTATGGAAATGCGCCTAGGTGGATCAAAGTTTTGCACG TGTAGGAATGTGTGAAAGCTCGTGCCTGGCTTTGCGTTTCTGTCAAAGGT TTGCGCTCGCCTCTTCGCCTTCGGGTCCAAATGATCGTCAGAATGACGAG GGCGGTATGTTGGGAGGGACTTAAGCGAGCACACGAGGGTAGGTTTCCTG AGCTCGGAGACAGAAGCAAGGAAAAAATAGACCTGAGGCCACGGCTTCAA CACACAATTAGGGTGAGAAGCCGTTGACGGCACCGAGTCTTCGTTTATTG CTTTTGTCTTCGTTTTTCTCCGTTGCCCGAACAAGCACGACTCTCTCATC AACGAATAATTTATTACGGTTACGCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3597632..3601159-

>mRNA_P-fluviatile_contig8.14658.1 ID=mRNA_P-fluviatile_contig8.14658.1|Name=mRNA_P-fluviatile_contig8.14658.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1278bp|location=Sequence derived from alignment at P-fluviatile_contig8:3597632..3601159- (Porterinema fluviatile SAG_2381)
ATGGCCACCTTTGCCCAGCAATCGTCTCCGGAGGAGGTCTTGAAGAAGGA
CCTCCTCATGCTGGAGGCGCAGAGGGACGCCCTGGAGCTAGAGGCGAACG
CGATCGCCGGCGAGCTCAATTCGTCTGGTGCCAACGGGGAGGCTCCCGTG
GGGTTGAAGGGCCCGCTCGTGGATTCCGAGGGATATCCTCGTGCAGGAGT
CGACCTTCTTAACGTCCGCTCAAAGAGACATCGATGGCCACCTTTGCCCA
GCAATCGTCTCCGGAGGAGGTCTTGAAGAAGGACCTCCTCATGCTGGAGG
CGCAGAGGGACGCCCTGGAGCTAGAGGCGAACGCGATCGCCGGCGAGCTC
AATTCGTCTGGTGCCAACGGGGAGGCTCCCGTGGGGTTGAAGGGCCCGCT
CGTGGATTCCGAGGGATATCCTCGTGCAGGAGTCGACCTTCTTAACGTCC
GCTCAAAGAGACATCGATTCAACTGCATCCAGACAGACCACAAGGCCGTG
ATGAGCAAGATCGAAACGTCCCTGCACGCGTTGCACGAATTGAGGGCGGC
AAGGCAAACACGGACGTCGTCGTCAACAGCACGATCACCTCCTGCGCCTG
CCACTTGTCGGCCGGCACGTACGACAACGGCCCCCGATATTGCCGCCGCC
ACTCTGTCCATGTCGCCGATCGCGAAGGTTAACCAGATTCAACTGCATCC
AGACAGACCACAAGGCCGTGATGAGCAAGATCGAAACGTCCCTGCACGCG
TTGCACGAATTGAGGGCGGCAAGGCAAACACGGACGTCGTCGTCAACAGC
ACGATCACCTCCTGCGCCTGCCACTTGTCGGCCGGCACGTACGACAACGG
CCCCCGATATTGCCGCCGCCACTCTGTCCATGTCGCCGATCGCGAAGGTT
AACCAGGTGTCGGAAGGCTCCCCCGCCGCCATCGCGGGGCTGGAGGTAGG
CGATCTCGTCCTGCGCTTCGGAAGCATCGATATCTCGCACCCCAAGGGCC
TGGGCGGTCTGGTGGACGTCGTCCGGGAGAAGGAGGGGCAAGAGGTGCCC
GTGACGGTGCTCAGGAGAGAACGGGTGGGCGGGGACGGGTGAGTGTCGGA
AGGCTCCCCCGCCGCCATCGCGGGGCTGGAGGTAGGCGATCTCGTCCTGC
GCTTCGGAAGCATCGATATCTCGCACCCCAAGGGCCTGGGCGGTCTGGTG
GACGTCGTCCGGGAGAAGGAGGGGCAAGAGGTGCCCGTGACGGTGCTCAG
GAGAGAACGGGTGGGCGGGGACGGGTGA
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