|
|
Homology
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: D8LKY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY2_ECTSI) HSP 1 Score: 243 bits (621), Expect = 5.020e-69 Identity = 144/262 (54.96%), Postives = 183/262 (69.85%), Query Frame = 3
Query: 1167 MPPYRAGGAASRGGSAYGVEGVLSRGVTQRDNQMQEALDEIGTGVHDLATKLGLEDDSPLDKQAHKRLAEKVQKLAAAGATLELKRKATTSALKKFAEQMDNRAARGSAAAPAPGELPP--EQMNMSYFLEEMKGEVSSAMEGADEKALESKKFKEVMKKISATDGGGDDDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRLRIESNTQ 1946
MPPYR G RGG A G GVLSRG Q+DNQM+E LD+I G +LA +G++++S LDK+ H++LAE+VQ+LAA A LE+KR AT SA+K A ++D + A E+M+M+YFLE M ++SSAMEGADEKALESK++K++MK I AT DDD D++ ++VSLKCP TS+T VDPVK+K CGHTYGK+AIL+HIRV G G SCPVA CS+KV ADLV DK+M RRL+IE NTQ
Sbjct: 136 MPPYRGG----RGGGAAG--GVLSRGAVQQDNQMKEILDDITAGTKELAGTVGMQENSGLDKEVHQKLAEQVQQLAAQNAKLEIKRAATASAMKTLAAEVDKKTAXXXXXXXXXXXXXXXXEEMDMAYFLESMTSKLSSAMEGADEKALESKEYKDLMKMIVAT--AMDDDDDIIVPNDNRVSLKCPLTSSTFVDPVKNKVCGHTYGKKAILNHIRVAKNDG-----GVSCPVAGCSNKVVKADLVPDKDMMRRLKIEENTQ 384
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: A0A0C3EDF4_9AGAM (SP-RING-type domain-containing protein n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3EDF4_9AGAM) HSP 1 Score: 67.0 bits (162), Expect = 1.710e-8 Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 3
Query: 1641 ISATDGGGDDDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRLRI-ESNTQRTQPEVDAEDI 1979
I DG DD D +E G KCP + TT+V+P+ SK CGH++ I +++ K G SCP A C+ ++ A L DK++++++RI E N QR + + D ++
Sbjct: 143 IPREDGDASDDEDDLEVGGVTQDYKCPISLTTLVNPMTSKVCGHSFSGAVIQDYLKKAGKDG------ISCPAAGCTKRLTMAALKHDKDLEKKVRIAERNRQRQEEDSDDAEV 250
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: A0A6S7HQ65_PARCT (E3 SUMO-protein ligase NSE2 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HQ65_PARCT) HSP 1 Score: 63.9 bits (154), Expect = 1.370e-7 Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 3
Query: 1617 KFKEVMKKISATDGGGDD---------DVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRLR 1928
K KE +K++ + GG D D++ + S+ CP T +V+PV+SKKC H+Y K I+HHIR + CPVA C+H V ADL + + R++
Sbjct: 120 KAKEFIKQVWNVNHGGQPLPTDQNETIDSDIIIAQASEESIICPLTQKQMVEPVRSKKCQHSYEKAGIIHHIRARQNR-------VRCPVAGCAHYVVEADLEPNSSLAFRIK 225
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: A0A6A6STW3_9PLEO (SP-RING-type domain-containing protein n=1 Tax=Lophiostoma macrostomum CBS 122681 TaxID=1314788 RepID=A0A6A6STW3_9PLEO) HSP 1 Score: 65.1 bits (157), Expect = 3.000e-7 Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 3
Query: 1641 ISATDGGGDDDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRV------GSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRLRIESNTQRTQPEVDAEDIDDD 1988
I+AT G DDD D++ + VS +CP T DP SKKC HT+ K AIL IR G+ +G G A CPV C ++A+DL ED + R+++ Q D+E DDD
Sbjct: 289 ITATQGDADDDDDIIMDRAT-VSTRCPLTFQQFKDPYTSKKCPHTFEKNAILEFIRRSQTRIGGNGRGPGERA-IQCPVNGCDEIISASDLYEDVVLVRKIK-RMQAAEAQGAEDSEPEDDD 407
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: UPI00106D07F6 (E3 SUMO-protein ligase NSE2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D07F6) HSP 1 Score: 62.8 bits (151), Expect = 3.470e-7 Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 3
Query: 1650 TDGGGDDDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRLR 1928
TD D D++ + S+ CP T +V+PV+SKKC H++ K AILHHIRV + CPV C+H V AD+ + + R++
Sbjct: 142 TDQNATIDSDIMIAQASEESVICPLTQKQMVEPVRSKKCHHSFEKAAILHHIRVRQNR-------VRCPVGGCAHYVTEADIEPNSSLAFRIK 227
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: A0A067BYA0_SAPPC (SP-RING-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BYA0_SAPPC) HSP 1 Score: 62.0 bits (149), Expect = 9.220e-7 Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 3
Query: 1659 GGDDDVDV-VENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRL 1925
G DDDVDV V+ T ++ CP T +V+P+++K+CGHTY K I H++ +K +CP+ C KV DL D EM+ R+
Sbjct: 178 GDDDDVDVLVQETEAANTITCPITLLEMVEPMRNKRCGHTYSKAGITAHLK---RKN-------ACPIGGCREKVGLHDLERDVEMEVRI 257
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: A0A420YL90_9PEZI (SP-RING-type domain-containing protein n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YL90_9PEZI) HSP 1 Score: 60.5 bits (145), Expect = 8.060e-6 Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 3
Query: 1653 DGGGDDDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRL 1925
+ GDDD + ++ TG K+ +CP + T + +P SK+C H++ K AIL IR+ G CPV C ++ DL DK + RR+
Sbjct: 284 EAAGDDDEEELQITGGKLDTRCPLSMTELTEPYTSKRCKHSFQKDAILEFIRLWRPGAQGNRC--MCPVVGCDKEIKKEDLYHDKILLRRI 372
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: A0A0C3NCT6_PISTI (SP-RING-type domain-containing protein n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3NCT6_PISTI) HSP 1 Score: 59.3 bits (142), Expect = 1.370e-5 Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = 3
Query: 1653 DGGGDDDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRLRIESNTQRTQPEVDAEDIDD 1985
DG DDD D+ E G KCP T TT+V+P+ SK CGH++ AI +++ + G +CP A C ++ A L DK+++++++I + ++ AED DD
Sbjct: 237 DGSDDDDEDL-EIGGVTQDYKCPITLTTLVNPMTSKVCGHSFSGDAIQEYLQ------RARADGIACPAAGCKKRLTMAVLRPDKDLEKKIKIAARQRQRL----AEDSDD 336
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: A0A0C9ZXY2_9AGAM (SP-RING-type domain-containing protein n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9ZXY2_9AGAM) HSP 1 Score: 59.3 bits (142), Expect = 1.370e-5 Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 3
Query: 1668 DDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMKRRLRIESNTQRTQPEVDAEDIDD 1985
DD D +E G KCP T TT+V+P+ SK CGH++ AI +++ + G +CP A C ++ A L DK+++++++I + ++ Q AED DD
Sbjct: 241 DDDDDLEIGGVTQDYKCPITLTTLVNPMTSKVCGHSFSGAAIQEYLQ------KARADGIACPAAGCKKRLTMAVLRPDKDLEKKIKIAARQRQRQ----AEDSDD 336
BLAST of mRNA_P-fluviatile_contig8.14645.1 vs. uniprot
Match: R7Z747_CONA1 (SP-RING-type domain-containing protein n=1 Tax=Coniosporium apollinis (strain CBS 100218) TaxID=1168221 RepID=R7Z747_CONA1) HSP 1 Score: 59.7 bits (143), Expect = 1.580e-5 Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 3
Query: 1641 ISATDGGGDDDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKCGHTYGKQAILHHIRVGSK--KGSGASAGASCPVAACSHKVAAADLVEDKEMKRRLR 1928
++ +G DDD+ + ++S KCP T VDPV S+KC HT+ ++AIL IR + G A CPV CS + A D+ D+ + R++R
Sbjct: 279 VTQAEGDSDDDIAIQR---ERISTKCPLTLKEFVDPVTSRKCPHTFEREAILSLIRQAGSLDRRRGVVAHVQCPVPGCSTLLTANDVAVDQLLVRKIR 373
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 250.0 |
| Seed ortholog evalue | 1.3e-63 |
| Seed eggNOG ortholog | 2880.D8LKY2 |
| Preferred name | NSMCE2 |
| GOs | GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006469,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010015,GO:0010073,GO:0010075,GO:0010082,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010605,GO:0010638,GO:0010646,GO:0010647,GO:0010948,GO:0010965,GO:0012505,GO:0016043,GO:0016604,GO:0016605,GO:0016740,GO:0016925,GO:0018193,GO:0018205,GO:0019207,GO:0019210,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0019887,GO:0022402,GO:0022622,GO:0023051,GO:0023056,GO:0030071,GO:0030234,GO:0030291,GO:0030915,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031331,GO:0031399,GO:0031400,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032268,GO:0032269,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032875,GO:0032876,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034641,GO:0036211,GO:0040008,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045859,GO:0045862,GO:0045876,GO:0045931,GO:0045934,GO:0045936,GO:0046483,GO:0048364,GO:0048507,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048638,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051276,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060249,GO:0060250,GO:0060255,GO:0061659,GO:0061665,GO:0062033,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0080036,GO:0080038,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0090398,GO:0097240,GO:0098687,GO:0098772,GO:0099402,GO:0106068,GO:0140096,GO:1901360,GO:1901564,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:1990683,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000280,GO:2001252 |
| EggNOG free text desc. | SUMO transferase activity |
| EggNOG OGs | KOG2979@1,KOG2979@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-11_006000.1 |
| Exons | 7 |
| Model size | 2521 |
| Cds size | 849 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817260.616602-UTR-P-fluviatile_contig8:3506723..3507889 | 1622817260.616602-UTR-P-fluviatile_contig8:3506723..3507889 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 3506724..3507889 + |
| 1693571786.2670097-UTR-P-fluviatile_contig8:3506723..3507889 | 1693571786.2670097-UTR-P-fluviatile_contig8:3506723..3507889 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 3506724..3507889 + |
| 1622817260.7201266-UTR-P-fluviatile_contig8:3513046..3513552 | 1622817260.7201266-UTR-P-fluviatile_contig8:3513046..3513552 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 3513047..3513552 + |
| 1693571786.5037618-UTR-P-fluviatile_contig8:3513046..3513552 | 1693571786.5037618-UTR-P-fluviatile_contig8:3513046..3513552 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 3513047..3513552 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817260.6299934-CDS-P-fluviatile_contig8:3507889..3508062 | 1622817260.6299934-CDS-P-fluviatile_contig8:3507889..3508062 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3507890..3508062 + |
| 1693571786.4270957-CDS-P-fluviatile_contig8:3507889..3508062 | 1693571786.4270957-CDS-P-fluviatile_contig8:3507889..3508062 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3507890..3508062 + |
| 1622817260.640862-CDS-P-fluviatile_contig8:3508718..3508800 | 1622817260.640862-CDS-P-fluviatile_contig8:3508718..3508800 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3508719..3508800 + |
| 1693571786.440411-CDS-P-fluviatile_contig8:3508718..3508800 | 1693571786.440411-CDS-P-fluviatile_contig8:3508718..3508800 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3508719..3508800 + |
| 1622817260.6542225-CDS-P-fluviatile_contig8:3509300..3509408 | 1622817260.6542225-CDS-P-fluviatile_contig8:3509300..3509408 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3509301..3509408 + |
| 1693571786.450925-CDS-P-fluviatile_contig8:3509300..3509408 | 1693571786.450925-CDS-P-fluviatile_contig8:3509300..3509408 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3509301..3509408 + |
| 1622817260.6696317-CDS-P-fluviatile_contig8:3510131..3510248 | 1622817260.6696317-CDS-P-fluviatile_contig8:3510131..3510248 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3510132..3510248 + |
| 1693571786.4609237-CDS-P-fluviatile_contig8:3510131..3510248 | 1693571786.4609237-CDS-P-fluviatile_contig8:3510131..3510248 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3510132..3510248 + |
| 1622817260.6825736-CDS-P-fluviatile_contig8:3510979..3511093 | 1622817260.6825736-CDS-P-fluviatile_contig8:3510979..3511093 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3510980..3511093 + |
| 1693571786.4706342-CDS-P-fluviatile_contig8:3510979..3511093 | 1693571786.4706342-CDS-P-fluviatile_contig8:3510979..3511093 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3510980..3511093 + |
| 1622817260.6958814-CDS-P-fluviatile_contig8:3511863..3512025 | 1622817260.6958814-CDS-P-fluviatile_contig8:3511863..3512025 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3511864..3512025 + |
| 1693571786.4804482-CDS-P-fluviatile_contig8:3511863..3512025 | 1693571786.4804482-CDS-P-fluviatile_contig8:3511863..3512025 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3511864..3512025 + |
| 1622817260.7095435-CDS-P-fluviatile_contig8:3512953..3513046 | 1622817260.7095435-CDS-P-fluviatile_contig8:3512953..3513046 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3512954..3513046 + |
| 1693571786.4922817-CDS-P-fluviatile_contig8:3512953..3513046 | 1693571786.4922817-CDS-P-fluviatile_contig8:3512953..3513046 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 3512954..3513046 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig8.14645.1 >prot_P-fluviatile_contig8.14645.1 ID=prot_P-fluviatile_contig8.14645.1|Name=mRNA_P-fluviatile_contig8.14645.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=283bp
MPPYRAGGAASRGGSAYGVEGVLSRGVTQRDNQMQEALDEIGTGVHDLAT
KLGLEDDSPLDKQAHKRLAEKVQKLAAAGATLELKRKATTSALKKFAEQM
DNRAARGSAAAPAPGELPPEQMNMSYFLEEMKGEVSSAMEGADEKALESK
KFKEVMKKISATDGGGDDDVDVVENTGHKVSLKCPCTSTTVVDPVKSKKC
GHTYGKQAILHHIRVGSKKGSGASAGASCPVAACSHKVAAADLVEDKEMK
RRLRIESNTQRTQPEVDAEDIDDDAPMGETSI* back to topmRNA from alignment at P-fluviatile_contig8:3506724..3513552+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig8.14645.1 ID=mRNA_P-fluviatile_contig8.14645.1|Name=mRNA_P-fluviatile_contig8.14645.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6829bp|location=Sequence derived from alignment at P-fluviatile_contig8:3506724..3513552+ (Porterinema fluviatile SAG_2381)
TAACACTCTCACAACACGAACCGCCCCGCTGGACACTACAAAGCTCGGTA
ACGTTGGCTTCGCCTCGAACCGCTGCTGCCATGTAAGAACGTACCAACGA
CGTGATATCGAATAACATAGTAAAACGTTCTTTGCTTTCATGACAAATTA
GTTATGTGACGCGCTTTTGTGGTCCGAAGGCAAATCGGGCGGCTTACGTT
TTGAAAACAGATACTCCGTAGTACTCCGTAGGAGTATTAATTACCGTATT
AATTAAGTGTCCCTTTTGGCCATGCTCCCATCACACCTCGGGTTCATCCT
CATCTCGATTGACACTTTTTGTAAATAGTGGCAGGTTTATATTCGAAAGG
GAAGGGTGCCGTGATCGTTGCATCTGTCTGCTCTCTGGTCAAATAAGGGC
TAGCGGCTTAACCTTCGCAACAGCTCTCTTACACTGATTGCAACAACGCG
ACCTACCACGCCCACCCCAACGAAGCCACCATGAAGTAGGCGAAAGTCGG
CACACTCTTCATCTCCCGCCAAAAAACCGCCGATGTTCCGCGGCTGGGAA
AGGCATGTGTCACTTTCAACACACAATCCTTCGTGGTCTTCAATACTCGC
AAGAATCTCGAAAGAGCCACATTCTTTCAACAACTTCCATGTACGAGCTC
TTTCACGGACACTTAGTGATGGGATGACGGTGAAATGACGGTAACGTGTC
TCAGCATATACCTGGATTCGAACCCGTATGTGCACCAAGATGGGACTGCT
TTCGGCGGGGCTGTATCCCAACAGAGTACACCCGACCGCGCACGCATGTC
CAGGCATCATCGTGTGCTGCCTAACCTGGTGCTGATGCCCGCGTAAGAGT
CAAGCCACACGACCGCAGTGAATACCGCAGTGGCACAAGGTGACACGCCC
TTGGGTCGATTGTTGAAGCTCGATATCTCGACAGCGATGGGTTCACCAGT
ATCGAGCGTTGAAAACCGGCCCACGGGCGCGTGGCAGCTTTCGCGAACGA
CGGTACTACTCGCTGCCCTCGCGTCGTCGTCTATCTTCTTGTTCCCCGTT
TCACTGCTGGTCCACTGTTCCCGCTCTTGGGTCGCCTCGACGGAGGAAGA
AGGTGGCGCTCATCCTGGAGAAGGCGACACAGAACCAAAGAAGAAGAAAC
CAGAACAGAAAGTGAAATGCCGCCGTACCGAGCGGGCGGGGCAGCCAGCA
GAGGAGGGTCGGCGTATGGAGTGGAAGGGGTGCTCTCGCGGGGCGTGACC
CAGAGAGACAACCAGATGCAAGAAGCTCTCGACGAGATCGGCACGGGCGT
CCACGACTTGGCCACCAAGCTGGGACTGGAGGACGACAGGTGTGCGGTTG
ATGCATGCTTTAAACAGCGGCACCCGTGGGGCTGGGGGAGATAACAAACA
GGTTTGCATTTAATTTCGTGAAATCAACAGCGTATGGGGAGAGAAAACGA
CGTTGGTGATGTTTTTCAAGTGCACAGCATCTAGATGAGTGTGCCATCAC
TCCCTGGCCGTAGACCTTGGTTTCAAGAGCACCTAATGCGAAGCGGGATC
GGAGGACCAGACCCTGCTTTAGATTGCAACCGAACCGCGCCTGTCATATC
GACTGACTGCATGGCTTACAGAATGCCGTGCCACGAGAACGGAGGAGAGC
ACACAGCTAACGGCTGGTCTCCAACACCCTCGACGCAGTAAAGTGTAATT
AGCTTCTTCCCGCAAGACTTACCGACGTCGCGCCGTTCGAGCCGACAGAC
AAACGCCGAACCATTCCGGTTTGTTTGTTAGAACGCCCGCAATTTGTGTT
TGTTGCGCACTGCGGTGTGTGATATTATCGTTCACAACATTTGCCGTGCT
TATTCGATACGTCGTCGTTCTTGGTGTGTTTGACGCCGAGGTTTCGGCGG
CCCTTGTTGTCCTCGGCCGGAGTCTCTCTTTGTGTTTTGTTGCTGCTGCC
GACGCCGCATTTGCCTGCTTCGGACCTGCGGCCAAATCCCAACAGCCCCC
TGGACAAACAAGCCCACAAAAGACTTGCGGAGAAGGTGCAGAAGCTCGCC
GCCGCAGGCGCCACGCTCGAACTCAAGGTCAGCCGTGCGGGTGTCCTTCG
TTTTTGACCATGCCACAAGGCTTTCATTTAGTGGTCACGCTGTCAGGTAG
AAAGGGCCCCGCGGTTCTATCTGGGATCCACTTTTTTTTTCGTCTTTTTC
TTGTACCTCCTTTTAGGTCACGTTTTAGCCTGTGACCACGGAATCGATCC
GGTAGAACAGGGAACGGATATGTGAAGGTGCTAGAGGTGATCGGAAGTTT
TTTATTGTGAACAGAAAAGAACAGATCATCCTGACCGATGTTATTTGATA
CTTTTGTGTCCGCTTAACATCCATCACTGAAGTCAGGAGTGACGTTTCTC
CGAGCTCGCCGGAGCTAGGTTTAAGAAAAATAGCGCCAGGATCAGATTGA
GTAGGTCGTGCATCGTGTGCGGGATAGTCGCTCCCTTCTTTTGCCTCCGT
TGTTCGTCGAAGTACTTACTTCACCTCGAATTTTGCCGTTGGGTGTGGTT
GATGCTCAAAACGCTGCTGATGTCCAGCGGAAGGCGACTACTTCGGCGCT
CAAGAAGTTCGCAGAACAGATGGACAACAGGGCGGCTAGGGGCTCCGCAG
CTGCACCAGCACCCGGCGAACTCCCCCCAGAGCAGGCACGAGATATTGCG
TAGTTGAGCAACTTGAGTGCACACTGGTTGTTCACTCGTAGTTTCCCGAT
GATTACGTGTCATTTTTGTCAGCTCTTCCTTAAGAAAATTGGAGCACATT
AATTCGCGTCCAGTGCTCGGAGGTATGTTCCAGCTGTACGGGTACCTGGT
GATCGAGTGGCATCCATCCAGACCGAGAGTCTCATGACAAAAGCATACGA
TTTGACCTCAAGCTCAGGGATCCGAGGACGTGCAAGATGGTGCTCCAGTG
TTGCGCGGTACGATTGTCTCAAAACTCAGCTCATTTGTTGGTTTGATTCA
CTTGAGGTTGTGTTCACGCGGCGCGTGTATTAACGCACGGAACCGAAATA
TATTAGGCAGCTGTGTCAAAATGTCGTCTTGGTCCACGCAAGCGATAAGC
CGGTCGATTAATATCGTACAGGGGTGAACAGAGTTTTGCGCCGTTTAACA
AAGCGCGAGGTATTGTCCTGGTTGTCGCTTTCGCGACTACACCTGCAAGC
ATGCGCCGTTTCGGAGGAGAGAAGAAAATTAGCAGTTGCGTTTATAGGTG
ATGATGTCTCGGTGCATACTTACTGCTGGTTTGGTTCTCTTTCGAGCAGT
TTTCACTTCTCTATTAGACGCTCCCCTCTCGGCTGCGTTGCAGACGTGCC
AGACGGGTCACGCCTTTCCGGCTGTCTGTTTTTTTTACCAATGAATACAC
GTAATCAGATGAATATGTCGTACTTCCTGGAAGAGATGAAGGGCGAGGTG
TCCTCGGCCATGGAAGGGGCTGACGAGAAGGCGCTGGAGTCCAAGAAGTT
CAAGGAAGTCATGAAGAAAATCTCCGTGAGTTGATTCGAACCGCGACGCC
CAAAACGGGAGTCTGAATTAACACCTCTGCGGGCGAGCTCGGCGTCTGAA
TGTTTACCAGCACATTCCGCAGCCCATTTGCAGTCCTTTATTTGAGGGCC
AGTAGGGTCGCGTCGGTAGCAGCACGACGGTATTCGATGGAGTGTTCAGT
GCCTAATGGGGTCCAGATCGTGTGGTGCATCAACAGCATGCTTATGACAA
GCTGCACAGGAGATGAGTCTTCGGCGGCGGCGTTGCTGCTGGGGTGTAAG
GCTGCCGATGTCTCGCCACGATGCAGTTCGTCCTACAGATGGAATGCAAG
GGATAGTTCGTCGTCGTGGTATGCATCGCGCAGTCGATTACAACAAGTCC
AAAAATCAATTTTATTCTCGATGACGATGAAACTGGCCTGACATGTTTGC
AGACGACCACGAACACAGCGGTGGCATCAAACCCCTCGTCCTTTCGGTTC
CGTGGGGCAAAGACGTTGAACATGTCTCCATGTTGGCGTGCATTATTTTT
AGTCAGCGTGACGGAAGCGGTGGTGTGATGGATTTCCCGTGCTCACCGCC
CGGGCTCAATAGTCACCTAGCCGCTCAACAGGCGAGAAGCCTACGAGGCC
GCTTCTTGGCGGCTTCGCACCAAAGGTGGTGCGAGTGTCCGTTGTCGGAT
AGTGCTGTGGGGCCCCGTACATATCAGTAGAGCTCACCCCCCGTCGCCCT
TGACAGGCCACAGACGGCGGCGGCGACGATGATGTCGACGTCGTTGAGAA
CACCGGACACAAGGTCAGCCTCAAGTGCCCGTGCACGTCGACAACCGTCG
TGGACCCCGTTAAGAGTAAGGTAAGTGACCGCCGGCATCGGCATTGGCAT
CCGCATGAAACATGCTCGTGTTTGGGCCGCTCAGTCAATCGACTCGGTCG
ACGTGATTGGTTTGTCTTCGGAGAGAGCGGCTAGGTAGGGAATTGCTGTA
TTTATTGCGTTTCGTGGTCCCTGGTCTCTCTTCTGTCTGGCGGTAGCCCC
CTGATTTCGAGTTGGACGAATCATCGGCTGGTGTAGAAGCTCGGTCGATC
TGATTGGATGGTCCGCACGATCCCTTGGCTGCCGTGACCGTCTTGCTTTT
GGCTGCCGGCTTTATTCGACAAGTGAATAGGTCAATCGATTTTCCACATT
TTTGTTGATCCTACCGGCCGGGACACGATGCTCCTTCGCGTTGGTATATC
AACCGCGGTAGTATAATATACCAATGGACCAGCCAACTCTAATTTTCAGC
AGCTCATGCGTGTTGGTAAGGATATTTGTTCTCCGCTCGCCGAGTTTCTA
GCCCCTTCGCGCTCCCCGGAAAAAGTTGACGTTCGCAGTGCCATGGCTAC
CAACGAAATCAGGCTCTCTATTCCAAGTGCGAGTGACAACATTTGCGCAT
TCTTTGTCGGCGGTGCCTCCATTTGAAGTAGAAACGATGGTGCGCTACCA
GGGTCCGTGATCGAATGAGCAAAACCAAGACGACCGATTTTGCCGCGGCC
TTGACCCCGACCTCGACTTCATCCCTAACCCCAACTCCAGCCCCAGCACC
ACCGCCAAAACCTCAAACCACACCCCGCCTCACCTCACAGAAATGCGGAC
ACACGTACGGGAAGCAAGCGATCCTCCACCACATCCGCGTCGGCAGCAAG
AAGGGCAGCGGGGCGAGCGCGGGGGCGTCGTGTCCCGTCGCCGCCTGCTC
GCACAAGGTCGCCGCTGCCGACTTGGTCGAGGACAAGGAAATGAAACGCC
GGGTGAGGAGGGAGGATTTGCTTCGTCTACTATCCATAGGCCAGTCCCTG
GGTTCCTTTTTGTCTGGAAACATTTCTCTGCTCTAGTTTTTCACCTTTGC
GTTCTCGAAGTGAATCCAGGAAAGCCGCTCCCTTTCGGCTGCAGTGCTGT
ACGTCGCTAGGTGCGCGAATTCCCTTCAGCTGCGTAATTTAGGTTGTTTG
GATGTTGAGCCACAGGCTCGTGAGGATCCTTCGCGCTGACGAAAGAATCG
TGTTTTTTCGAAGCCAGACGGGTTTCAAACTCCAAGCCGCGAGCTAACAG
TCAGAGAATTTAGAGTTATTAAGTGATGTGACCGCCATCGAAGACTAATA
CACCAGTTTTCCGATCAGCTATGAATCATGGCGGAGCTCACTGACCAACT
TCTGGTCCTGAATCCTTTTTGCATCCATCGTGGATTACCTCGGCCCGTGC
ACTATCTGCAGGGGGAAGAACATATATACTACTTGTTGAAACTCCTAGTC
TCCTCCCGCGGCGGTTGTTGTCCGGTTAGACGTCGCCTCAGCTCAGCCGG
AGTGCTTTCCACCTGCACGTACCATACCTCGGACCAGTGTGCGATCCTGG
TTGCCACAACGTTGCGAATTTCTTGCCAAATACGCGCATCATCGGACGTG
GCCCCGTGTGTTAGCCCTCCGCCCCGTGCAAGGGGGTCCCAGCTGTACCA
CAGCACAAAATTCCCCACAAGTTGAGGCGCGTGTTTTTCTCCTGTCCAGG
TTTAGTCAAAAGCGAACATGCATACACAAGGTCCAATTAAACGCCATGCT
TGTCCATCCAGAACGAAACACGTTGCCGAACGCACAGGTATCAAAGGTGA
ATCATACAACTTTCGCTTGTTCTTGCTTCGCGCATGCGGCGAAACACGTG
CACGGTTTTGTCCGTTCACGCCCTCCATAGTTACGTATCGAGAGCAACAC
GCAACGCACACAACCGGAGGTGGACGCCGAGGACATCGACGACGACGCGC
CGATGGGAGAAACGAGCATCTAGGCTGCTGCGGCTGAGTTTTCATTCTGT
CGTTGTGGCGTACGCCCGACGGCCGTTTCTGTGTTGTTTCTCACGGCCTG
TACTCCGTAGGCGAAAATGAGTATTTTGGATTCTGTACAATTTTTCGAAA
CAAATCTCCCCCCTTTCTCAAAAATCAGTCAATCGCGGACTGAGCACAAG
CCTTTTTTTCTCGCGAACGACTGCGCGTGACGATCGTTTCGGGCCAAAGA
AGGCGTTGCTCAGGGGGGTTCTTTTGGTGCTGACACATCTATCTATTCGT
GGGGAGGCGGAGCGAGGATACGGAGACGTGTTCCGAAGTACTTAAGCTTG
GTGTGAGGTTTCCTCCAAGTAGCGAGACCCAATTGTGGAGTATATGCAAG
CCGTTCGACGGGCGTGCCATTGGATGGAGCTGGGCGGGTCGCTCTCCTAC
CCGATCATGGATTGCCGTGACTCCTCGAAGGACGGTCTGCTCAACTCCCA
CACACATGACGATGGCAATCCTTCAGGGC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig8:3506724..3513552+ >mRNA_P-fluviatile_contig8.14645.1 ID=mRNA_P-fluviatile_contig8.14645.1|Name=mRNA_P-fluviatile_contig8.14645.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1698bp|location=Sequence derived from alignment at P-fluviatile_contig8:3506724..3513552+ (Porterinema fluviatile SAG_2381)
ATGCCGCCGTACCGAGCGGGCGGGGCAGCCAGCAGAGGAGGGTCGGCGTA
TGGAGTGGAAGGGGTGCTCTCGCGGGGCGTGACCCAGAGAGACAACCAGA
TGCAAGAAGCTCTCGACGAGATCGGCACGGGCGTCCACGACTTGGCCACC
AAGCTGGGACTGGAGGACGACAGATGCCGCCGTACCGAGCGGGCGGGGCA
GCCAGCAGAGGAGGGTCGGCGTATGGAGTGGAAGGGGTGCTCTCGCGGGG
CGTGACCCAGAGAGACAACCAGATGCAAGAAGCTCTCGACGAGATCGGCA
CGGGCGTCCACGACTTGGCCACCAAGCTGGGACTGGAGGACGACAGCCCC
CTGGACAAACAAGCCCACAAAAGACTTGCGGAGAAGGTGCAGAAGCTCGC
CGCCGCAGGCGCCACGCTCGAACTCAAGCCCCCTGGACAAACAAGCCCAC
AAAAGACTTGCGGAGAAGGTGCAGAAGCTCGCCGCCGCAGGCGCCACGCT
CGAACTCAAGCGGAAGGCGACTACTTCGGCGCTCAAGAAGTTCGCAGAAC
AGATGGACAACAGGGCGGCTAGGGGCTCCGCAGCTGCACCAGCACCCGGC
GAACTCCCCCCAGAGCAGCGGAAGGCGACTACTTCGGCGCTCAAGAAGTT
CGCAGAACAGATGGACAACAGGGCGGCTAGGGGCTCCGCAGCTGCACCAG
CACCCGGCGAACTCCCCCCAGAGCAGATGAATATGTCGTACTTCCTGGAA
GAGATGAAGGGCGAGGTGTCCTCGGCCATGGAAGGGGCTGACGAGAAGGC
GCTGGAGTCCAAGAAGTTCAAGGAAGTCATGAAGAAAATCTCCATGAATA
TGTCGTACTTCCTGGAAGAGATGAAGGGCGAGGTGTCCTCGGCCATGGAA
GGGGCTGACGAGAAGGCGCTGGAGTCCAAGAAGTTCAAGGAAGTCATGAA
GAAAATCTCCGCCACAGACGGCGGCGGCGACGATGATGTCGACGTCGTTG
AGAACACCGGACACAAGGTCAGCCTCAAGTGCCCGTGCACGTCGACAACC
GTCGTGGACCCCGTTAAGAGTAAGGCCACAGACGGCGGCGGCGACGATGA
TGTCGACGTCGTTGAGAACACCGGACACAAGGTCAGCCTCAAGTGCCCGT
GCACGTCGACAACCGTCGTGGACCCCGTTAAGAGTAAGAAATGCGGACAC
ACGTACGGGAAGCAAGCGATCCTCCACCACATCCGCGTCGGCAGCAAGAA
GGGCAGCGGGGCGAGCGCGGGGGCGTCGTGTCCCGTCGCCGCCTGCTCGC
ACAAGGTCGCCGCTGCCGACTTGGTCGAGGACAAGGAAATGAAACGCCGG
AAATGCGGACACACGTACGGGAAGCAAGCGATCCTCCACCACATCCGCGT
CGGCAGCAAGAAGGGCAGCGGGGCGAGCGCGGGGGCGTCGTGTCCCGTCG
CCGCCTGCTCGCACAAGGTCGCCGCTGCCGACTTGGTCGAGGACAAGGAA
ATGAAACGCCGGTTACGTATCGAGAGCAACACGCAACGCACACAACCGGA
GGTGGACGCCGAGGACATCGACGACGACGCGCCGATGGGAGAAACGAGCA
TCTAGTTACGTATCGAGAGCAACACGCAACGCACACAACCGGAGGTGGAC
GCCGAGGACATCGACGACGACGCGCCGATGGGAGAAACGAGCATCTAG back to top
|