mRNA_P-fluviatile_contig8.14642.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14642.1
Unique NamemRNA_P-fluviatile_contig8.14642.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3475009..3475705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14642.1prot_P-fluviatile_contig8.14642.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3475068..3475705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.2222404-UTR-P-fluviatile_contig8:3475008..34750671622817217.2222404-UTR-P-fluviatile_contig8:3475008..3475067Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3475009..3475067 -
1693571542.3853433-UTR-P-fluviatile_contig8:3475008..34750671693571542.3853433-UTR-P-fluviatile_contig8:3475008..3475067Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3475009..3475067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.2346294-CDS-P-fluviatile_contig8:3475067..34752821622817217.2346294-CDS-P-fluviatile_contig8:3475067..3475282Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3475068..3475282 -
1693571542.3948302-CDS-P-fluviatile_contig8:3475067..34752821693571542.3948302-CDS-P-fluviatile_contig8:3475067..3475282Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3475068..3475282 -
1622817217.2461164-CDS-P-fluviatile_contig8:3475662..34757051622817217.2461164-CDS-P-fluviatile_contig8:3475662..3475705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3475663..3475705 -
1693571542.4045758-CDS-P-fluviatile_contig8:3475662..34757051693571542.4045758-CDS-P-fluviatile_contig8:3475662..3475705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3475663..3475705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14642.1

>prot_P-fluviatile_contig8.14642.1 ID=prot_P-fluviatile_contig8.14642.1|Name=mRNA_P-fluviatile_contig8.14642.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=86bp
AADGKEREGGARRKGSGGNNGGRAAGRGVKFDRACWRIVDGHDFMALYCL
HFACRACIFFPVATCRVFGKILGAGVHHCLLLLYF*
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mRNA from alignment at P-fluviatile_contig8:3475009..3475705-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14642.1 ID=mRNA_P-fluviatile_contig8.14642.1|Name=mRNA_P-fluviatile_contig8.14642.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=697bp|location=Sequence derived from alignment at P-fluviatile_contig8:3475009..3475705- (Porterinema fluviatile SAG_2381)
GCTGCCGATGGCAAAGAAAGAGAGGGAGGAGCGCGGCGAAAAGGTGACCA
GGGGCGTGCTTCCATCTAGAGGTTGACCTGTGTTGGCGCCGGGGATCAAT
TGACGGAGATTGCGGGCTGAATATCCATCATCGATGGTATCCGAATGTTT
GGAGGCTCTTCCCGAGCTATCTTTTAGCGCGCTCTCGCATGTGTCTCAAG
TGTGTTTGATGCAAATCCGAACGAACCCCTCTCTCCCCCCGCGCACCCCA
AAAGCACACTTGCGTAACGGAGACGTACGTCAGTTTCCAAGCGCTATCAA
AATCAACTGCAGCAGCAGCAACAGCATTGTCGATATGATACCCTCCCTGC
ACATGTTCACCAGGCAGACCACACAAAATCTAAATGTACAGTCCCGTCTT
TCTTTCCAACACCTATGTTGCAGGGTCTGGCGGGAATAACGGCGGGAGAG
CTGCAGGACGCGGTGTAAAATTCGATAGGGCATGCTGGAGAATCGTAGAC
GGGCACGACTTTATGGCACTTTACTGTCTACACTTTGCCTGCCGAGCTTG
TATATTTTTTCCCGTCGCAACTTGTCGAGTTTTTGGCAAAATTTTGGGAG
CGGGGGTCCACCACTGTCTGTTGTTGTTGTACTTTTGAACGAGCCTGATA
TGGCAGTCAAGTGAGGATTGTCTGAACCAAACCGCGATTGAGGAGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3475009..3475705-

>mRNA_P-fluviatile_contig8.14642.1 ID=mRNA_P-fluviatile_contig8.14642.1|Name=mRNA_P-fluviatile_contig8.14642.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=516bp|location=Sequence derived from alignment at P-fluviatile_contig8:3475009..3475705- (Porterinema fluviatile SAG_2381)
GCTGCCGATGGCAAAGAAAGAGAGGGAGGAGCGCGGCGAAAAGGCTGCCG
ATGGCAAAGAAAGAGAGGGAGGAGCGCGGCGAAAAGGGTCTGGCGGGAAT
AACGGCGGGAGAGCTGCAGGACGCGGTGTAAAATTCGATAGGGCATGCTG
GAGAATCGTAGACGGGCACGACTTTATGGCACTTTACTGTCTACACTTTG
CCTGCCGAGCTTGTATATTTTTTCCCGTCGCAACTTGTCGAGTTTTTGGC
AAAATTTTGGGAGCGGGGGTCCACCACTGTCTGTTGTTGTTGTACTTTTG
AGGTCTGGCGGGAATAACGGCGGGAGAGCTGCAGGACGCGGTGTAAAATT
CGATAGGGCATGCTGGAGAATCGTAGACGGGCACGACTTTATGGCACTTT
ACTGTCTACACTTTGCCTGCCGAGCTTGTATATTTTTTCCCGTCGCAACT
TGTCGAGTTTTTGGCAAAATTTTGGGAGCGGGGGTCCACCACTGTCTGTT
GTTGTTGTACTTTTGA
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