mRNA_P-fluviatile_contig8.14641.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14641.1
Unique NamemRNA_P-fluviatile_contig8.14641.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14641.1 vs. uniprot
Match: D8LKX9_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 4.670e-38
Identity = 97/193 (50.26%), Postives = 120/193 (62.18%), Query Frame = 3 
Query:   69 NLKEELGPLLTESQLGAAGSRH-RSTPPATPPNSLN--LPASEG-VTKTVSPNSVGRAIAAPTTAVDDIAERFGRRRAHSLSRHDFNMFLPAWQEEDTEGAAPYSAGKPPSFSEDRRRTMSMSFAESRRRP----NREVFNATII--RCLDCNLPPSFAHEGETAIFCRAHQMEGMVDVLRKGCRYKGCHRTA 617
            N  + LG L+T+       SRH + TPP TPP++ +     SEG  ++T SP+S+ + I APTTAVDD+ E+FGR RA SLSR D +  LP  +EE  E              EDRRRT+SMS  E  R      +R    A+ +  RCLDCNLPPSFA EGE AIFCRAHQMEGMV+VLR+GC  +GC RTA
Sbjct:    8 NATDMLGDLVTKPSAAGTPSRHYKPTPPPTPPSACSPYRSVSEGGSSETCSPHSLRKGITAPTTAVDDVVEKFGRPRARSLSRRDLS--LPPLEEEAPEIVR----------LEDRRRTVSMSITEGHRYDGGGGSRSARQASAVNKRCLDCNLPPSFAMEGEPAIFCRAHQMEGMVNVLREGCTTQGCCRTA 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKX9_ECTSI4.670e-3850.26EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3470931..3474886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-11_005960.1
Exons6
Model size1573
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14641.1prot_P-fluviatile_contig8.14641.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3470951..3474056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.0704515-UTR-P-fluviatile_contig8:3470930..34709501622817260.0704515-UTR-P-fluviatile_contig8:3470930..3470950Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3470931..3470950 +
1693571785.7585976-UTR-P-fluviatile_contig8:3470930..34709501693571785.7585976-UTR-P-fluviatile_contig8:3470930..3470950Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3470931..3470950 +
1622817260.1562777-UTR-P-fluviatile_contig8:3474056..34748861622817260.1562777-UTR-P-fluviatile_contig8:3474056..3474886Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3474057..3474886 +
1693571785.8367918-UTR-P-fluviatile_contig8:3474056..34748861693571785.8367918-UTR-P-fluviatile_contig8:3474056..3474886Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3474057..3474886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.0831728-CDS-P-fluviatile_contig8:3470950..34709561622817260.0831728-CDS-P-fluviatile_contig8:3470950..3470956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3470951..3470956 +
1693571785.7706184-CDS-P-fluviatile_contig8:3470950..34709561693571785.7706184-CDS-P-fluviatile_contig8:3470950..3470956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3470951..3470956 +
1622817260.0946262-CDS-P-fluviatile_contig8:3471426..34716281622817260.0946262-CDS-P-fluviatile_contig8:3471426..3471628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3471427..3471628 +
1693571785.7810524-CDS-P-fluviatile_contig8:3471426..34716281693571785.7810524-CDS-P-fluviatile_contig8:3471426..3471628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3471427..3471628 +
1622817260.1089687-CDS-P-fluviatile_contig8:3472116..34723671622817260.1089687-CDS-P-fluviatile_contig8:3472116..3472367Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3472117..3472367 +
1693571785.7932293-CDS-P-fluviatile_contig8:3472116..34723671693571785.7932293-CDS-P-fluviatile_contig8:3472116..3472367Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3472117..3472367 +
1622817260.1214359-CDS-P-fluviatile_contig8:3472881..34729561622817260.1214359-CDS-P-fluviatile_contig8:3472881..3472956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3472882..3472956 +
1693571785.8028526-CDS-P-fluviatile_contig8:3472881..34729561693571785.8028526-CDS-P-fluviatile_contig8:3472881..3472956Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3472882..3472956 +
1622817260.13363-CDS-P-fluviatile_contig8:3473433..34735171622817260.13363-CDS-P-fluviatile_contig8:3473433..3473517Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3473434..3473517 +
1693571785.8117557-CDS-P-fluviatile_contig8:3473433..34735171693571785.8117557-CDS-P-fluviatile_contig8:3473433..3473517Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3473434..3473517 +
1622817260.1447759-CDS-P-fluviatile_contig8:3473951..34740561622817260.1447759-CDS-P-fluviatile_contig8:3473951..3474056Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3473952..3474056 +
1693571785.8260562-CDS-P-fluviatile_contig8:3473951..34740561693571785.8260562-CDS-P-fluviatile_contig8:3473951..3474056Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3473952..3474056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14641.1

>prot_P-fluviatile_contig8.14641.1 ID=prot_P-fluviatile_contig8.14641.1|Name=mRNA_P-fluviatile_contig8.14641.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=241bp
MEKEILARRIAAPTCGNLKEELGPLLTESQLGAAGSRHRSTPPATPPNSL
NLPASEGVTKTVSPNSVGRAIAAPTTAVDDIAERFGRRRAHSLSRHDFNM
FLPAWQEEDTEGAAPYSAGKPPSFSEDRRRTMSMSFAESRRRPNREVFNA
TIIRCLDCNLPPSFAHEGETAIFCRAHQMEGMVDVLRKGCRYKGCHRTAS
YGFPGEGRERCFSHMEDGMVHVLTAAKPAKGAAAEIESEP*
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mRNA from alignment at P-fluviatile_contig8:3470931..3474886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14641.1 ID=mRNA_P-fluviatile_contig8.14641.1|Name=mRNA_P-fluviatile_contig8.14641.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3956bp|location=Sequence derived from alignment at P-fluviatile_contig8:3470931..3474886+ (Porterinema fluviatile SAG_2381)
GCCAGCTGTTCGAAAAGATCATGGAGGTGAGCGAGCTGAACAAGTGAAAG
ACCTACTCCTCTCGCCTCTTGGGGATGAGACACGATGTCGCGAGGATTCT
GCAGAAGGCACACGGATCGCCTCTTTAGATATGCCCCCACTTCAACAAGA
GCCGCGGATTAGTTGAAGTATTGCTCATTCGCGGCGAAACGCCGGCAGGA
TACAGCCGAACACAGGGGCCCGGCGGCTACACATCCTGTCAAGAACTCCT
TGAAAGTCCTTTGTGGTGTCACCTGTCATGCTTATATCGCACTGAGCACA
ATCGTAACTCGTTAAGCGCCGAGGAGCCGTCAAGCATCTCGCTGGCTCCA
TTGATCGGGTTCGCAGCCCTAGCCGTCGAATATCTCGCTGGCTCCATTGA
TCGGGTTCGGAGCCCTGCGCCCGTGTGTGTGCATAAAGTGCTGCAAGTCT
CGATGAGTACCTGAGTCCGCTCTGTTCCCTCGTGACCATACCGCAGAAAG
AGATTCTGGCACGCAGGATAGCCGCCCCGACTTGTGGGAACTTGAAGGAG
GAATTGGGGCCGCTGCTCACTGAATCCCAGCTGGGAGCCGCGGGGAGCCG
CCACAGGTCGACCCCACCTGCTACGCCTCCAAACTCGCTAAACCTTCCGG
CTTCCGAGGGAGTCACGAAGACCGTGTCCCCCAACAGCGTGGGAAGAGGT
ACCTGCTTAACACACACAGACTGGAAATAATTCTTGAACAAATCTCAATC
TTCGCTGTTATTTCTCCGCGCTCTTTGGATGTCCGTGGATCGGACCCGAA
TCTCATGCTCCTAGGGGAACACGCCTCTTGCTGTGTTTATGGTTTAAAGT
TTGTCGAGAAGATTTCTTCGGCCTGGGTGCAGCAGCGCGTCATTTGTCGA
CCCAAAATGTCTCCATCGACCCAGACGCGGGCAGGAATCAATCAACCGAA
GTTATGCATGTGATCTCCGCTGCCGGCGGCGCCCAAGCTTCGCGACTGGG
TGCCGTTTACTCGTGGTGCTTTTTCCCCGGGAAATCAAGTGCTCAAACGT
GTGCCGGCTGTGGAGTAGTGTCACTCAATTCAAACTTGAACGCATTCAAG
CTCGTGCTCTTGCTATTTTTGCAGATCGTCAGCCTCCCCCCTCCCGCGCG
TTGCTGTCTTCTCACCTTTTTTCCCAACAGTTCCAGCCATTGCAGCCCCT
ACAACCGCCGTGGATGACATAGCGGAGAGGTTCGGTCGGCGCAGGGCGCA
CTCCCTGAGCCGGCACGATTTCAACATGTTCCTGCCGGCGTGGCAGGAGG
AGGACACCGAGGGCGCGGCGCCCTACAGCGCCGGAAAACCGCCATCATTT
TCGGAAGATCGCCGCAGAACCATGTCTATGTCGTTCGCTGAAAGCCGCCG
GAGGCCGAATCGTGAGGTATTCAATGCTACTATCATTGTCGCGGAAACTT
GTAGTAGGGGTGGTGGTTGGGGGGTTGGGGTTTGGGGGGGGCGGAAAGGT
TGCTGCTAGTACGAGGTGTCACGGATGATTCGTGGTGGTGCAACCAAAAA
TTTCCAGCAGTCCTGGGGCAGTCGCGATTTGTAACGTTAACTTGCTATCA
CGAGGCCCACCCGCCACTCGTCTGGAATGGATCCCCTACGCCCCAAGTAT
GGCAGGTAGAGACGCTGCTCAAACGGCCTGATAAGTTGAACGCGATCAAC
CAAACAAAGCAGGCACGAGTGCGTACGTGCGGTTGGAGAAGTTGGTGCAA
AGCCTACAAACTACCGACAACAGTCGTTAAAGTAGTCGGTCATCTAGCCA
CCTGCGTTCTTCCTAGTCGGAGAAGTTTCTGTAGCCCGGGCCTCCTCCGA
TGTGCCGCGGCTGGCCGTCCCGTCCCACATCGCGCTCAATTCGTGCTTCC
ACACCGCACTCGTTCGTCTCGTTCCGTTTTTCGGCCTCTGTACTCCGGAA
GCGGTGCCTCGACTGCAACTTGCCGCCCTCCTTCGCGCACGAGGGAGAGA
CCGCAATTTTTTGCCGCGCCCATCAGGTGTGTGCCCTTTCGATGTTCGCT
CTCGCGCTTCCCCAGTTCCGTGGAAAACGTCTCGGCATTTTGCGGGAAAG
TTGTGCGTCGTTCATCCATCTATTCGGGGACATCTGGATAGGATCCGCCG
AGAAATATAGAAGCGAATGGGCACGAGCAATGTTCCAGCAGATTGATTTT
ACTTCGTCCTAGATCGACTAGGAAATGTTCAGCAGGGCACGAGAACATGG
TGGTGGCCGTCGGGACTTGGCAGGTTTCCTCATCGGAGCGAATACTGCTG
CGACTGCTTTTAGCAGCTGGTCGGTTGCTGTTGGTGGAGAGTCGAAGCGT
GATCAGCAGTCGACAGAAAGGCTCAATCGGCTGTTGTCACGGAGCATCAT
GTGACGATCCCTATGGCAGCGATGACACGCCCAATGGAGGAAAATCTCTT
GGTCGGTGACCTGAGACCTGCGAACATGCCATCCCTCTTGTGATCCTGCC
CAGATGGAGGGCATGGTGGACGTCCTGAGGAAAGGATGCAGGTACAAGGG
GTGTCACAGGACCGCCTCGTACGGCTTCCCAGGAGAGGTAATGGACATTG
ACCGAACCGCTGCTCATGTGCACCATACCACCATCTCAGACTGTTCGGTA
TCAGGCGCTTCAGCCATACGCAGTAAATGTTACCATTATTGAAACACCTT
TCTCTTGGAAGCACGCTGCCTCGCGGTAAACGGAAGCGTCCATTCCTTTT
CGCCTCGGTCTCGTGGCACGACGCGCCGGATGCCGATTAGTGGGTGTGTT
CGAATGTCCTTTCGTGACGCTTCGCATTGTACGTGTAGCAACAAATGATT
CCAGGCACAACGAAACATGAACCTCTCGCGACTGGGCACGTATTGTTGAA
GGAGAGATTCCCCGTTTTCCATAGTAATAGGGGGAGGCATATGATGCATG
CATAAATCGTTCAGTGCCACGTGGTCCCCCTGCTGACAATATTTTGTTTT
ACCTTGTTTTAAATATCCTAGGGTAGGGAACGCTGCTTCAGCCACATGGA
GGATGGAATGGTGCACGTGCTGACAGCAGCAAAACCGGCCAAGGGAGCCG
CGGCGGAAATTGAGAGTGAACCCTAGCGACTCCTCTCTCGCTGAGACATG
GGCGCAGGCGAAACACAAGCCTCGATCACGCTGGAATATCAGCCGTTCGT
ACAATGTACTGCCAATAGTCGCTATGTAGCAGGCCATCGTGTTTCTTTGT
TTAAGGTAAGGATGGCCGCGCCCACACGTTGTAGGGGGTTGCTTTTGGGG
TTCGTGGACACCGCCCTGTTGGAAACGGGTCATGTAAAGAGAAGAGATAT
AGGTGCGTCTCCTTTACATGGTCCGACCGCCCGGCCGGTGAGGCACATGA
AGTGCGTGGATATTAAACGGGATTGTTGGGATTTCCGGTCATCAGGAGAG
CAGTTTCGAGAGTTGATGGTGTGGCCGGGAGCAGCTCGCTGTCTATGTGT
TCCCCTGTTTGGTGTATGAGCATGTACAAGGGTCAAGAATGGTTGCGGGA
TGTTTCTGTCAGAGAGCCACAAAAGGGGCAATTTGTATATTCACCCTCGT
AAAGGTGCCTACTGTCGTGGTGCATTGCTAAAGCTTGTTGTACAAGTTCA
ATTTAGAGAGTTGGGACGACCGGTGCACTGTACCACGATTAGTCGTACAG
GCAACCATTGCAAACGTTGCCGTAACTTAGTTTTGCAAGTCAACAGTAGG
TTCTGCTAGTGCTGTGCGCCATTTTACAAGTTTGAATTACGAAGTAACTA
TTTTCACCTCAAAATATGCTTGAAGTTTTGGAGTTCGTTGATGCAGAACA
CAAGGAATGATCTTGGAAACAGTGGTGAGAATATGTGCCTGTTCTAGGTG
CCATGCGAATGAATATCACAGACTTGTGGCGGATACGACAATCAGGATAA
TGCAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3470931..3474886+

>mRNA_P-fluviatile_contig8.14641.1 ID=mRNA_P-fluviatile_contig8.14641.1|Name=mRNA_P-fluviatile_contig8.14641.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1446bp|location=Sequence derived from alignment at P-fluviatile_contig8:3470931..3474886+ (Porterinema fluviatile SAG_2381)
ATGGAGATGGAGAAAGAGATTCTGGCACGCAGGATAGCCGCCCCGACTTG
TGGGAACTTGAAGGAGGAATTGGGGCCGCTGCTCACTGAATCCCAGCTGG
GAGCCGCGGGGAGCCGCCACAGGTCGACCCCACCTGCTACGCCTCCAAAC
TCGCTAAACCTTCCGGCTTCCGAGGGAGTCACGAAGACCGTGTCCCCCAA
CAGCGTGGGAAGAGAAAGAGATTCTGGCACGCAGGATAGCCGCCCCGACT
TGTGGGAACTTGAAGGAGGAATTGGGGCCGCTGCTCACTGAATCCCAGCT
GGGAGCCGCGGGGAGCCGCCACAGGTCGACCCCACCTGCTACGCCTCCAA
ACTCGCTAAACCTTCCGGCTTCCGAGGGAGTCACGAAGACCGTGTCCCCC
AACAGCGTGGGAAGAGCCATTGCAGCCCCTACAACCGCCGTGGATGACAT
AGCGGAGAGGTTCGGTCGGCGCAGGGCGCACTCCCTGAGCCGGCACGATT
TCAACATGTTCCTGCCGGCGTGGCAGGAGGAGGACACCGAGGGCGCGGCG
CCCTACAGCGCCGGAAAACCGCCATCATTTTCGGAAGATCGCCGCAGAAC
CATGTCTATGTCGTTCGCTGAAAGCCGCCGGAGGCCGAATCGTGAGGTAT
TCAATGCTACTATCATTCCATTGCAGCCCCTACAACCGCCGTGGATGACA
TAGCGGAGAGGTTCGGTCGGCGCAGGGCGCACTCCCTGAGCCGGCACGAT
TTCAACATGTTCCTGCCGGCGTGGCAGGAGGAGGACACCGAGGGCGCGGC
GCCCTACAGCGCCGGAAAACCGCCATCATTTTCGGAAGATCGCCGCAGAA
CCATGTCTATGTCGTTCGCTGAAAGCCGCCGGAGGCCGAATCGTGAGGTA
TTCAATGCTACTATCATTCGGTGCCTCGACTGCAACTTGCCGCCCTCCTT
CGCGCACGAGGGAGAGACCGCAATTTTTTGCCGCGCCCATCAGCGGTGCC
TCGACTGCAACTTGCCGCCCTCCTTCGCGCACGAGGGAGAGACCGCAATT
TTTTGCCGCGCCCATCAGATGGAGGGCATGGTGGACGTCCTGAGGAAAGG
ATGCAGGTACAAGGGGTGTCACAGGACCGCCTCGTACGGCTTCCCAGGAG
AGATGGAGGGCATGGTGGACGTCCTGAGGAAAGGATGCAGGTACAAGGGG
TGTCACAGGACCGCCTCGTACGGCTTCCCAGGAGAGGGTAGGGAACGCTG
CTTCAGCCACATGGAGGATGGAATGGTGCACGTGCTGACAGCAGCAAAAC
CGGCCAAGGGAGCCGCGGCGGAAATTGAGAGTGAACCCTAGGGTAGGGAA
CGCTGCTTCAGCCACATGGAGGATGGAATGGTGCACGTGCTGACAGCAGC
AAAACCGGCCAAGGGAGCCGCGGCGGAAATTGAGAGTGAACCCTAG
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