mRNA_P-fluviatile_contig8.14638.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig8.14638.1 vs. uniprot
Match: D8LKW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW2_ECTSI) HSP 1 Score: 871 bits (2250), Expect = 3.070e-288 Identity = 670/1425 (47.02%), Postives = 795/1425 (55.79%), Query Frame = 1
Query: 97 SSRHRLVSASSVGQIREALRQQGGQ-SVEGLREIGRQIELALRDEAAGIREAGLDAAALFTAACSARSDKGQEALLGVQDKVLAGLRAMISSSLPPDQYHPLRAALLPLVAQPAFVKKRKGYRQHLVQALAEAASGPLPPIALLPILLAKETGPAAADLALEILERITTRAEEKNGGGGFI--DTSAKAIIELLRHLVAEVISSGATTKGKRGTIKGPQAHLTSFLVQACSSLPDFILVFAKDLLDLSGSRSSSLRKLSLAVLSVVLEHGXXXXXXLRAGAACRATTTPDPALAAVLRFARSDGDATVRCLAFDIVAGYVAGQMETTCFDRR---DEDCCIDLDSSSDTSDVAVPERPEIMAGAVVDDRGSGDGDDSG-----GDLEARLREMDIAPCAGGTPDHDGGDCLGPPAEK-------TPAISTREIAMGRATRGRNGGVRGRGATASAHDENVGANLERRDGGGG-----------RVSQGPWSVRGSLLSSLSAASDALSGDGSKAVRARALACSFRILEVHGGDVRAGGPR-RGVAEEREGQFISDSVNDVIAKVCVQVAKGAWRALEALAEDGRG----TASLLSSGXXXXXXXXXXHSRQRKAADAARDLLTLPCVDAKPVDLVRCFARCSRVGPGADRGAEAAGAMEA-RALREVARAIFCEDLGTLLNATSDVMASDERNGGNGDGDPMDGSADTSEGASSSLSEVLRKVLAGVGGDVIEPLLRETLEAYTHREDDQSRGRCNGAEKSAPVLLRTLALLAEANGDFDSIGGGVAQQSGXXXXXXXXXXXXXXXXGRNNPGRPSGAGRDRRRGDQG-QLRLLAESQRLFWHRLERRMEEIECN----DEGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SSSCDPVSELSELLRIFQLLASRSLVSPGNSAALEALVFPAALSRRRRLISPAVGLALALDEPHRVLLSSLAVLQDVAFARTSTDVISRACDYVRLVGVLARENASFVEAHVREHYKGVLKGKNRQGTSRARGEEGKLEDGEDDYMAEASNREAMEFEIRRLLEASVTSDGMLSCYTPFLLAIVRRRVADMAATREXXXXXXXXXXX-SMAMTAG-----------VRSDDGARAPWGEDAIPPSPSSSCPWALCCEALWALSEYAVLSPRLAAGEVLPLAEGLASDTREHARVRSAAVGVLTRRELATDEIAARCGLLLEDEDPRLRQLVLVYLGRLMKESRIKTAHLSRVALMVVDESAEVRRTARAVFFDHLQPRPDTVTRRCLFETFFTLDADETTKRNVLEHLIAVARQAAPGQGLEQMGGALVRKATETGDAQAAFFLSLVPPSVNSLEAAEVALRRGHLSQAPPETVFLVAAHFSKGARKG-GIGAGNGTGVGGQPAAGGNAP-SRAQALDMAARIGSLVSR 4203
S+ LVS+SS+GQ EALR + SV+ LREIGRQIELAL EA +RE GL + +RA LLPLVAQP F KKRKGYRQHLV ALAEAASGP+PP ALLPIL AKETGPAA DL LEIL+RI +A+E GGG DTS A+I+LL H+VAEV++SG T G+RG KGP AHL SFLV A S+LP++ LVFAKDLL L+ S SS RK+SLA+L+ +L HG GA C T DPALAAVLR +RSDGDATVR AFD VA ++ G++E+T + +R D+D DLD + + DV ++P A + DD +G G G G EM+IAP G +H G P +EK TPA T+ AM AT GR G T+ H A+ E R+ G +VS GPW+V G+L SSLSAA++AL DGSKAVRA+ALAC RILEVHGG ++ G ++ G + V+ + + VAKGA ALE LA D G ASL S+G R RKAAD AR LL LPC+++ PVDLV C+ARC RV PG G EA GA EA RALRE+A+A FC D+ L A S +MA+DER G DG ADT+EGAS LSEVL +VLAGV I LL + LEAY ++ R R +GA SAPVLLRTLALLAEA G + GV +++G G +N R +G GD+ QLR LA SQ LFW RLE+RME+IE + + GGRG XXXXXX S++ D +SELSELLR+FQLLA+RSL+SP N AALEALVFPAALSRRR ACDYVRL+GVLARENASF+ AH+RE Y SR GEE E+GEDDYMA SNREAM E D R MA G V D GA A G P+SSCP ALC EALWALSEYAVLS LAA EVLPLAE LASDT EH +VR+AAVGVLTRRELATDEIAA LLEDE+P LR+ VLV LG+L+KESR CLFET+FTLDA+E KR VL+ L+AVAR+AAPGQGLE +G ALVRK E GD++AAFFLSLVPP+VNS EAAEVA RRG L+Q+P T+ LVAAHFS+GA++G G + G+ GG AP S+AQAL+MAARIGSL SR
Sbjct: 17 SNTRHLVSSSSLGQQVEALRTRADNLSVDDLREIGRQIELALPGEA-DLREVGL--------------------------------------------HRTVRAVLLPLVAQPGFAKKRKGYRQHLVHALAEAASGPVPPSALLPILRAKETGPAATDLTLEILQRIIRKADEGGGGGSIRSNDTSKNAVIDLLHHVVAEVVTSGVTKGGRRGA-KGPPAHLISFLVNAFSTLPEYALVFAKDLLVLTESSSSPARKMSLAILASILGHGREL------GAQCGGTIL-DPALAAVLRLSRSDGDATVRSSAFDSVAKFI-GEVESTLYRQRLDDDDDTSSDLDDGTPSGDVLAHQQPRNTAETLTDDDSTGSGAGGGRGVTHGARATETMEMEIAPRGDGAANHAGDADACPLSEKRPSATARTPAACTQMGAMHGATSGRQSGEGDTPVTSRQHTTGH-AHRETREAGAASEGNRGQRRKAKVSAGPWAVGGALQSSLSAAAEALLTDGSKAVRAKALACLLRILEVHGGTIKPRGASCENTTGDKAGSAAAPGVSSRVETILSAVAKGALAALEPLAGDNTGGPTIQASLNSTGGG---------GRHRKAADTARALLVLPCIESSPVDLVMCYARC-RVAPGVGEG-EAVGATEAKRALREIAQATFCADIRKLWKAVSVIMAADERRQGLEDGSANIDFADTTEGASFPLSEVLCEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDR-DGAAASAPVLLRTLALLAEATGHAKN---GVDERNGARQPG-----------GSSNRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLEQRMEDIERDKRGEETGGRGVEGDRGQLRRRGVGVSVEQYHGGXXXXXXXRSAASDTISELSELLRMFQLLATRSLLSPENGAALEALVFPAALSRRR------------------------------------------ACDYVRLIGVLARENASFIAAHIREQYSARC-------LSRP-GEEESAENGEDDYMAGVSNREAMG--AATTAEEGEXXXXXXXXXXXXXXXXXXXXDGDCGGARVGSRGDAQDEMQYRMAQQDGGKVEATVFREDVGQDRGATAAAGVSL----PASSCPRALCTEALWALSEYAVLSAGLAAAEVLPLAERLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCLRREVLVRLGQLIKESR------------------------------------------CLFETYFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGSALVRKVAEAGDSEAAFFLSLVPPTVNSFEAAEVAHRRGQLAQSPHGTISLVAAHFSRGAQRGAGSSLATTASIAGR---GGGAPLSKAQALEMAARIGSLTSR 1259
BLAST of mRNA_P-fluviatile_contig8.14638.1 vs. uniprot
Match: A0A6H5KWW9_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW9_9PHAE) HSP 1 Score: 369 bits (947), Expect = 1.170e-109 Identity = 256/450 (56.89%), Postives = 296/450 (65.78%), Query Frame = 1
Query: 3172 MLSCYTPFLLAIVRRRVADMAATREXXXXXXXXXXXSMAM--------------TAGVRSD---DGARAPWGEDAIPPS-----------------------------------PSSSCPWALCCEALWALSEYAVLSPRLAAGEVLPLAEGLASDTREHARVRSAAVGVLTRRELATDEIAARCGLLLEDEDPRLRQLVLVYLGRLMKESRIKTAHLSRVALMVVDESAEVRRTARAVFFDHLQPRPDTVTRRCLFETFFTLDADETTKRNVLEHLIAVARQAAPGQGLEQMGGALVRKATETGDAQAAFFLSLVPPSVNSLEAAEVALRRGHLSQAPPETVFLVAAHFSKGARKGGIGAGNGTGVGGQPAA-GGNAP-SRAQALDMAARIGSLVSREGVGRPSASRRARPAASERPRRGQAATSAV-AARSRDGGESD-ASALRGGSG 4353
MLSCYTPFLLAIVRRRVAD AA R +AG +D D AR G DA + P+SSCP ALC EAL ALSEYAVLS LAA EVLPLAEGLASDT EH +VR+AAVGVLTRRELATDEIAA LLEDE+P +R+ VLV LG+LMKESRIKT HLSR AL++VD S VR+ A+ VF DHLQPRPDTV RCLFETFFTLDA+E KR VL+ L+AVAR+AAPGQGLE +GGALVRKA ETGD++AAFFLSLVPP+VNS EAAEVALRRG L+Q+P T+FLVA HFS+GA++G AG+ + A GG AP S+AQAL+MAA+IGSL SR G SRRA+ AA+ G AA + V AAR R G ++D A+A +GG G
Sbjct: 1 MLSCYTPFLLAIVRRRVADTAAARNVTAEKGAATKAEXXXXXXXXXXXXXXXXASAGGAADGDCDEARVGSGGDAHDETRLHVVQQDGGKVEATDFRKDGGQGRGATTAASVSLPASSCPRALCTEALRALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCVRREVLVRLGQLMKESRIKTGHLSRFALLLVDVSEGVRQAAQKVFIDHLQPRPDTVC-RCLFETFFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGGALVRKAAETGDSEAAFFLSLVPPTVNSFEAAEVALRRGQLAQSPHATIFLVATHFSRGAQRG---AGSSLAITASVAGRGGGAPLSKAQALEMAAQIGSLASR-GASASIFSRRAKVAAAIAT--GAAAMNTVPAARPRRGKKTDQAAATQGGQG 443
BLAST of mRNA_P-fluviatile_contig8.14638.1 vs. uniprot
Match: A0A6H5L3C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C3_9PHAE) HSP 1 Score: 330 bits (847), Expect = 3.540e-93 Identity = 333/882 (37.76%), Postives = 405/882 (45.92%), Query Frame = 1
Query: 787 PDFILVFAKDLLDLSGSRSSSLRKLSLAVLSVVLEHGXXXXXXLRAGAACRATTTPDPALAAVLRFARSDGDATVRCLAFDIVAGYVAGQMETTCFDRR---DEDCCIDLDSSSDTSDVAVPERPEIMAGAVVDD----------RGSGDGDDSGGDLEARLREMDIAPCAGGTPDHDGGDCLGPPAEK-------TPAISTREIAMGRATRGRNG-------------GVRGRGATASAHDENVGANLERRDGGGGRVSQGPWSVRGSLLSSLSAASDALSGDGSKAVRARALACSFRILEVHGGDVRAGGPRRGVAEEREGQ-----------------------------------------------FISDSVNDVIAKVC-------------------------------------------VQVAKGAWRALEALAEDGRG----TASLLSSGXXXXXXXXXXHSRQRKAADAARDLLTLPCVDAKPVDLVRCFARCSRVGPGADRGAEAAGAMEA-RALREVARAIFCEDLGTLLNATSDVMASDERNGGNGDGDPMDGSADTSEGASSSLSEVLRKVLAGVGGDVIEPLLRETLEAYTHREDDQSRGRCNGAEKSAPVLLRTLALLAEANGDFDSIGGGVAQQSGXXXXXXXXXXXXXXXXGRNNPGRPSGAGRDRRRGDQGQLRLLAESQRLFWHRLERRMEEIECND----------EGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SSSCDPVSELSELLRIFQLLASRSLVSPGNSAALEALVFPAALSRRRRLISPAVGLALALDEPHRVLLSSLAVLQDVAFARTSTDVISRACDYVRLVGVLARENASFVEAHVREHYK 3009
P+ +DLL L+ S SS RK+SLAVL+ +LEHG GA C T DPALAA+LR ARSDGDATVR AFD +A ++ GQM TT + +R ++D DLD + + DV ++ A A+ D RG + G +M+IAP G DH G P +EK TP T+ AM AT GR R AT A + G +RR+ +VS GPW++ G+L SSLSAA++AL DGSKAVRA+ALACS ILEVHG ++ PR E G F S IA +C VQVAKGA ALEALA D G ASL S+G R RKAAD AR LL LPCV+ PV+LV C+ARC RV G G EA GA EA RALRE+A+A F D+ LL A S +MA+DER G DG ADT+EGAS SLSEVL +VLAGV I LL + LEAY ++ R R K + N D ++ QLR LA SQ LFW RLE+RME+IE ++ +G RG XXXXXXXXX S++ D VSELSELLRIFQLLA+ SL+S NSAALEALVFPAALSRRR ++S ++ + H +FA SRACDYVRL+GVLARENASF+ AHVRE Y+
Sbjct: 4 PNISTTKTQDLLALTESSSSPARKMSLAVLAAILEHGREL------GAQCGGTIL-DPALAALLRLARSDGDATVRSSAFDSIAKFI-GQMGTTLYRQRLHDNDDTSSDLDDGTPSGDVLAHQQSRSTAEALTDXXXXXXXXXXXRGV-----THGARATETMDMEIAPSERGAADHAGDADACPLSEKIPSATARTPMARTQMGAMHGATSGRQSRQGRTPVISPQHTSDRAHRATRGAGAPSEGNRGQRREA---KVSAGPWTMGGALQSSLSAAAEALLTDGSKAVRAKALACSLLILEVHGDTIQ---PRGACCENTAGDEAGSAAGPGVSSRVERTLSTASSRCGGILILMAFLRSQRRLPRSSVDFASRPCMSGIAILCPSLRKRDLRQRCFPYTRGSFTWVHLSKSLVVQEPFLPLSTLCRVQVAKGALLALEALAGDNHGGSTTQASLNSTGGG---------GRHRKAADTARALLILPCVEPSPVELVMCYARC-RVASGVGEG-EAVGATEAKRALREIAQATFSADIRKLLKAVSVIMAADERRQGLEDGSANINFADTTEGASFSLSEVLGEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDGETRK-----------YSNYNSD-----------------------------------------------EEEQLRTLAGSQGLFWRRLEQRMEDIERDERREESGWQGAQGDRGQLRRRGLGLSIEQYHGGGGXXXXXXXXXHGHRSAAPDAVSELSELLRIFQLLATYSLLSAKNSAALEALVFPAALSRRRLIVSRSIDI-------HN------------SFAFLVLVWGSRACDYVRLIGVLARENASFIAAHVREQYR 778 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig8.14638.1 >prot_P-fluviatile_contig8.14638.1 ID=prot_P-fluviatile_contig8.14638.1|Name=mRNA_P-fluviatile_contig8.14638.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1519bp MIPQRSSRHRLVSASSVGQIREALRQQGGQSVEGLREIGRQIELALRDEAback to top mRNA from alignment at P-fluviatile_contig8:3424996..3443685+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig8.14638.1 ID=mRNA_P-fluviatile_contig8.14638.1|Name=mRNA_P-fluviatile_contig8.14638.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=18690bp|location=Sequence derived from alignment at P-fluviatile_contig8:3424996..3443685+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig8:3424996..3443685+ >mRNA_P-fluviatile_contig8.14638.1 ID=mRNA_P-fluviatile_contig8.14638.1|Name=mRNA_P-fluviatile_contig8.14638.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=9114bp|location=Sequence derived from alignment at P-fluviatile_contig8:3424996..3443685+ (Porterinema fluviatile SAG_2381)back to top |