mRNA_P-fluviatile_contig8.14630.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14630.1
Unique NamemRNA_P-fluviatile_contig8.14630.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3367322..3367990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.0096855-CDS-P-fluviatile_contig8:3367322..33674041622817217.0096855-CDS-P-fluviatile_contig8:3367322..3367404Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3367323..3367404 -
1693571542.2177315-CDS-P-fluviatile_contig8:3367322..33674041693571542.2177315-CDS-P-fluviatile_contig8:3367322..3367404Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3367323..3367404 -
1622817217.0228615-CDS-P-fluviatile_contig8:3367841..33679901622817217.0228615-CDS-P-fluviatile_contig8:3367841..3367990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3367842..3367990 -
1693571542.2263298-CDS-P-fluviatile_contig8:3367841..33679901693571542.2263298-CDS-P-fluviatile_contig8:3367841..3367990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3367842..3367990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14630.1prot_P-fluviatile_contig8.14630.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3367323..3367990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14630.1

>prot_P-fluviatile_contig8.14630.1 ID=prot_P-fluviatile_contig8.14630.1|Name=mRNA_P-fluviatile_contig8.14630.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=77bp
GAPNRGKRQREDASKGSEQLQLVRYWQRGTGEPLQTLHKQLISSKVSVCM
FCGLALACRSMCPASVLHRRPRPPCAM
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mRNA from alignment at P-fluviatile_contig8:3367322..3367990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14630.1 ID=mRNA_P-fluviatile_contig8.14630.1|Name=mRNA_P-fluviatile_contig8.14630.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=669bp|location=Sequence derived from alignment at P-fluviatile_contig8:3367322..3367990- (Porterinema fluviatile SAG_2381)
GGGGCCCCGAATCGAGGAAAGAGACAACGAGAGGACGCCAGCAAAGGCTC
TGAACAACTACAACTCGTTCGCTATTGGCAGCGGGGAACCGGTGAGCCCC
TGCAAACTCTGCATAAACAATTAATCTCTTCAAAAGTGTCTGTCTGTATG
TGGCAGTGGGTATCTTCCGATTACATTCCAGCATGTGCACAGCAGTTGTT
TTTTTTCGCGTTCGTGTTTGTCCGTCTCTTGTTGGCGCGTGTCTACATTT
TTGTAGTGTCACGAATGTACACATCACGTGATACGCTACTGCTGTAAACC
GTGAAGTTTTGATTGGCATACAGAACTGCCGTGTCCGGCCGCCCGCCCCG
GAAAGTTGAAGCAGAGAAATTTTTGCCACATACGCCGGAGTATATGTTAA
TGCGTGTGTAAACTTCTACTACCACTACTGCTGTACCTCGATGCAAAACA
TACATGTAAAGCAACAAAATACCCGAGATACCGATGTACGTTGTGTACTG
CTGTCGGTACTGCTGCATGGATTTTTTCAACCTTTTTGGTTGTGTACCTA
CGTATGGCATGCGCATCTTTTCCCATTGGTCGGTAGGTTTTGCGGACTCG
CGCTGGCGTGCAGGAGTATGTGTCCGGCTTCAGTTTTGCATCGCCGGCCC
CGGCCCCCGTGTGCGATGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3367322..3367990-

>mRNA_P-fluviatile_contig8.14630.1 ID=mRNA_P-fluviatile_contig8.14630.1|Name=mRNA_P-fluviatile_contig8.14630.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=462bp|location=Sequence derived from alignment at P-fluviatile_contig8:3367322..3367990- (Porterinema fluviatile SAG_2381)
GGGGCCCCGAATCGAGGAAAGAGACAACGAGAGGACGCCAGCAAAGGCTC
TGAACAACTACAACTCGTTCGCTATTGGCAGCGGGGAACCGGTGAGCCCC
TGCAAACTCTGCATAAACAATTAATCTCTTCAAAAGTGTCTGTCTGTATG
GGGCCCCGAATCGAGGAAAGAGACAACGAGAGGACGCCAGCAAAGGCTCT
GAACAACTACAACTCGTTCGCTATTGGCAGCGGGGAACCGGTGAGCCCCT
GCAAACTCTGCATAAACAATTAATCTCTTCAAAAGTGTCTGTCTGTATGT
TTTGCGGACTCGCGCTGGCGTGCAGGAGTATGTGTCCGGCTTCAGTTTTG
CATCGCCGGCCCCGGCCCCCGTGTGCGATGGTTTTGCGGACTCGCGCTGG
CGTGCAGGAGTATGTGTCCGGCTTCAGTTTTGCATCGCCGGCCCCGGCCC
CCGTGTGCGATG
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