mRNA_P-fluviatile_contig8.14624.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14624.1
Unique NamemRNA_P-fluviatile_contig8.14624.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14624.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.140e-14
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = -1 
Query:  226 DHFSVDCPLKHVPKQGHLCHNCGNSGHFRQFCPFLPNLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQDMPYSAPPGTLPGMAVMAP 504
            DH  +DCPLK+VPKQ H+CHNCGN GHFRQ+CPFL           XXXXXXXXXXXXXXXXXXXXXXXXX R D+PY APPG L G+ +MAP
Sbjct:  560 DHLWLDCPLKNVPKQNHVCHNCGNPGHFRQYCPFLG----LNAPPGXXXXXXXXXXXXXXXXXXXXXXXXXPRPDLPYGAPPGDLQGIGMMAP 648
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUK6_9PHAE1.140e-1469.89CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3314477..3314980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size505
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.02632-CDS-P-fluviatile_contig8:3314476..33149801622817219.02632-CDS-P-fluviatile_contig8:3314476..3314980Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3314477..3314980 +
1693571544.23329-CDS-P-fluviatile_contig8:3314476..33149801693571544.23329-CDS-P-fluviatile_contig8:3314476..3314980Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3314477..3314980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14624.1prot_P-fluviatile_contig8.14624.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3314477..3314980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14624.1

>prot_P-fluviatile_contig8.14624.1 ID=prot_P-fluviatile_contig8.14624.1|Name=mRNA_P-fluviatile_contig8.14624.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=168bp
PSSSSSLVAAAFISAAFHPNPTFSRVALSLLRPDATAAAAAVRRVRPRPE
WRRLLHRRRPERRVHELLQRHQGWRRGHHGHSRQGPGGSAVRHVLSRRRR
RAAEGGGWTVVAGAAAARPGLLVMLLLLLLQIRQERAELAEVAAIAAVMA
EVTLLRDVLERTVHAEVV
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mRNA from alignment at P-fluviatile_contig8:3314477..3314980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14624.1 ID=mRNA_P-fluviatile_contig8.14624.1|Name=mRNA_P-fluviatile_contig8.14624.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=504bp|location=Sequence derived from alignment at P-fluviatile_contig8:3314477..3314980+ (Porterinema fluviatile SAG_2381)
CCCTCCTCCTCTTCCTCGCTTGTCGCCGCCGCCTTTATCTCTGCCGCTTT
TCACCCTAATCCCACGTTTTCGCGCGTCGCTTTGTCGTTGTTGCGGCCTG
ACGCCACCGCCGCCGCCGCCGCTGTCCGGAGGGTACGCCCCCGCCCCGAA
TGGCGGCGGCTGCTGCATCGGCGGCGGCCCGAGCGGAGGGTACATGAGCT
GTTGCAGCGGCATCAGGGGTGGAGGCGGGGCCATCACGGCCATTCCCGGC
AAGGTCCCGGGGGGAGCGCTGTACGGCATGTCTTGTCGCGGAGGCGGAGG
CGGGCCGCCGAGGGCGGTGGCTGGACCGTAGTGGCCGGCGCTGCTGCCGC
CAGGCCCGGCCTGCTGGTGATGCTGCTGTTGCTGCTGCTGCAGATTCGGC
AGGAACGGGCAGAATTGGCGGAAGTGGCCGCTATTGCCGCAGTTATGGCA
GAGGTGACCTTGCTTCGGGACGTGCTTGAGCGGACAGTCCACGCTGAAGT
GGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3314477..3314980+

>mRNA_P-fluviatile_contig8.14624.1 ID=mRNA_P-fluviatile_contig8.14624.1|Name=mRNA_P-fluviatile_contig8.14624.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1008bp|location=Sequence derived from alignment at P-fluviatile_contig8:3314477..3314980+ (Porterinema fluviatile SAG_2381)
CCCTCCTCCTCTTCCTCGCTTGTCGCCGCCGCCTTTATCTCTGCCGCTTT
TCACCCTAATCCCACGTTTTCGCGCGTCGCTTTGTCGTTGTTGCGGCCTG
ACGCCACCGCCGCCGCCGCCGCTGTCCGGAGGGTACGCCCCCGCCCCGAA
TGGCGGCGGCTGCTGCATCGGCGGCGGCCCGAGCGGAGGGTACATGAGCT
GTTGCAGCGGCATCAGGGGTGGAGGCGGGGCCATCACGGCCATTCCCGGC
AAGGTCCCGGGGGGAGCGCTGTACGGCATGTCTTGTCGCGGAGGCGGAGG
CGGGCCGCCGAGGGCGGTGGCTGGACCGTAGTGGCCGGCGCTGCTGCCGC
CAGGCCCGGCCTGCTGGTGATGCTGCTGTTGCTGCTGCTGCAGATTCGGC
AGGAACGGGCAGAATTGGCGGAAGTGGCCGCTATTGCCGCAGTTATGGCA
GAGGTGACCTTGCTTCGGGACGTGCTTGAGCGGACAGTCCACGCTGAAGT
GGTCCCCTCCTCCTCTTCCTCGCTTGTCGCCGCCGCCTTTATCTCTGCCG
CTTTTCACCCTAATCCCACGTTTTCGCGCGTCGCTTTGTCGTTGTTGCGG
CCTGACGCCACCGCCGCCGCCGCCGCTGTCCGGAGGGTACGCCCCCGCCC
CGAATGGCGGCGGCTGCTGCATCGGCGGCGGCCCGAGCGGAGGGTACATG
AGCTGTTGCAGCGGCATCAGGGGTGGAGGCGGGGCCATCACGGCCATTCC
CGGCAAGGTCCCGGGGGGAGCGCTGTACGGCATGTCTTGTCGCGGAGGCG
GAGGCGGGCCGCCGAGGGCGGTGGCTGGACCGTAGTGGCCGGCGCTGCTG
CCGCCAGGCCCGGCCTGCTGGTGATGCTGCTGTTGCTGCTGCTGCAGATT
CGGCAGGAACGGGCAGAATTGGCGGAAGTGGCCGCTATTGCCGCAGTTAT
GGCAGAGGTGACCTTGCTTCGGGACGTGCTTGAGCGGACAGTCCACGCTG
AAGTGGTC
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