mRNA_P-fluviatile_contig8.14602.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14602.1
Unique NamemRNA_P-fluviatile_contig8.14602.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3072018..3073135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size614
Cds size612
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.9108567-CDS-P-fluviatile_contig8:3072017..30720531622817216.9108567-CDS-P-fluviatile_contig8:3072017..3072053Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3072018..3072053 +
1693571542.1724918-CDS-P-fluviatile_contig8:3072017..30720531693571542.1724918-CDS-P-fluviatile_contig8:3072017..3072053Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3072018..3072053 +
1622817216.9211998-CDS-P-fluviatile_contig8:3072557..30731331622817216.9211998-CDS-P-fluviatile_contig8:3072557..3073133Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3072558..3073133 +
1693571542.1861663-CDS-P-fluviatile_contig8:3072557..30731331693571542.1861663-CDS-P-fluviatile_contig8:3072557..3073133Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3072558..3073133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14602.1prot_P-fluviatile_contig8.14602.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3072018..3073133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14602.1

>prot_P-fluviatile_contig8.14602.1 ID=prot_P-fluviatile_contig8.14602.1|Name=mRNA_P-fluviatile_contig8.14602.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=204bp
QPSFSTSHGHTMGASSSSPSAGRAALARDKRSFAISDAQLRASVRTDNNG
ARSPKDVVKTAVPRATPKAVPRATPKEAPVRNSADNVTCAYTLLQKAASQ
QNTAHGNVDENKRQATPTRKGAGLGDYQGTVEASPQRQEVKLQQDIKGRQ
RKPSAASYDWSVQNIGFCDIKSAQRIRLERENRDGYVRASFASRDADRPY
IAEA
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mRNA from alignment at P-fluviatile_contig8:3072018..3073135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14602.1 ID=mRNA_P-fluviatile_contig8.14602.1|Name=mRNA_P-fluviatile_contig8.14602.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1118bp|location=Sequence derived from alignment at P-fluviatile_contig8:3072018..3073135+ (Porterinema fluviatile SAG_2381)
CAGCCCTCTTTCTCAACTTCCCACGGGCACACAATGGTGGGTGAGACACG
GTTTACGAATAGTATTAACACCCTTGACTCCCTGCGTATTTTATCGAGCA
CTTCAAGGACCCTAAAAGCAGTGTACCGCAGGCAGGTCGAGCAGCTTCAC
CGGCCGGAAGACAAAGTGTAGTTACTGCTACAACCGGAAGTTTCTAGGTT
CGCTGTAGCTGAAGTTCTTTTGTCCGAAATCACCTTTTCGGAGCCTCTGT
GACTCATGTTAAACACAGATCATGTAACGATACGAACCGCTCTGCTGCCA
GTGGGCTACTATAGTCTCTAGATGTCCGTGGCCAATCCCCTTTGCGAGGG
TTGCCATGTTCAAATTGTTCAACCAGGCACTTCATTCCTTACTCAGGATA
CTCATCTCTGAGACGCGCGTCATTTACATGAGGAACAGGTTCCCGAGAGT
TGCAGCTGATGAACAAAGCTGTGTCGGTATGGAGTAGTATTTTGGGACTC
GAATGAATTATGGTGCGCTGTGTTTTTTTTCCTGCAGCAGGGTGCATCGT
CGTCGTCACCTTCGGCCGGCCGAGCAGCACTCGCCCGTGACAAACGGTCC
TTTGCCATCTCGGACGCGCAGCTTCGGGCAAGCGTAAGGACCGACAACAA
CGGCGCACGATCTCCCAAAGATGTCGTCAAAACAGCTGTTCCTCGTGCAA
CACCCAAAGCTGTTCCTCGTGCAACACCAAAAGAGGCTCCGGTCAGAAAC
TCGGCGGACAATGTGACGTGCGCGTATACGCTGCTACAGAAGGCGGCATC
GCAGCAAAACACGGCGCATGGTAACGTCGACGAAAACAAGCGACAGGCAA
CACCAACAAGAAAAGGAGCAGGATTAGGGGATTACCAGGGGACGGTCGAA
GCGTCTCCTCAGCGACAAGAGGTGAAGCTACAGCAGGACATCAAGGGCCG
TCAGCGAAAGCCCTCGGCCGCCTCGTACGATTGGAGCGTGCAGAACATCG
GTTTCTGCGATATCAAGTCGGCGCAACGTATACGACTGGAGAGGGAAAAC
CGCGACGGCTACGTGCGAGCGTCGTTTGCTTCGCGCGACGCGGATAGGCC
CTACATAGCGGAGGCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3072018..3073135+

>mRNA_P-fluviatile_contig8.14602.1 ID=mRNA_P-fluviatile_contig8.14602.1|Name=mRNA_P-fluviatile_contig8.14602.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1224bp|location=Sequence derived from alignment at P-fluviatile_contig8:3072018..3073135+ (Porterinema fluviatile SAG_2381)
CAGCCCTCTTTCTCAACTTCCCACGGGCACACAATGCAGCCCTCTTTCTC
AACTTCCCACGGGCACACAATGGGTGCATCGTCGTCGTCACCTTCGGCCG
GCCGAGCAGCACTCGCCCGTGACAAACGGTCCTTTGCCATCTCGGACGCG
CAGCTTCGGGCAAGCGTAAGGACCGACAACAACGGCGCACGATCTCCCAA
AGATGTCGTCAAAACAGCTGTTCCTCGTGCAACACCCAAAGCTGTTCCTC
GTGCAACACCAAAAGAGGCTCCGGTCAGAAACTCGGCGGACAATGTGACG
TGCGCGTATACGCTGCTACAGAAGGCGGCATCGCAGCAAAACACGGCGCA
TGGTAACGTCGACGAAAACAAGCGACAGGCAACACCAACAAGAAAAGGAG
CAGGATTAGGGGATTACCAGGGGACGGTCGAAGCGTCTCCTCAGCGACAA
GAGGTGAAGCTACAGCAGGACATCAAGGGCCGTCAGCGAAAGCCCTCGGC
CGCCTCGTACGATTGGAGCGTGCAGAACATCGGTTTCTGCGATATCAAGT
CGGCGCAACGTATACGACTGGAGAGGGAAAACCGCGACGGCTACGTGCGA
GCGTCGTTTGCTTCGCGCGACGCGGATAGGCCCTACATAGCGGAGGCGGG
TGCATCGTCGTCGTCACCTTCGGCCGGCCGAGCAGCACTCGCCCGTGACA
AACGGTCCTTTGCCATCTCGGACGCGCAGCTTCGGGCAAGCGTAAGGACC
GACAACAACGGCGCACGATCTCCCAAAGATGTCGTCAAAACAGCTGTTCC
TCGTGCAACACCCAAAGCTGTTCCTCGTGCAACACCAAAAGAGGCTCCGG
TCAGAAACTCGGCGGACAATGTGACGTGCGCGTATACGCTGCTACAGAAG
GCGGCATCGCAGCAAAACACGGCGCATGGTAACGTCGACGAAAACAAGCG
ACAGGCAACACCAACAAGAAAAGGAGCAGGATTAGGGGATTACCAGGGGA
CGGTCGAAGCGTCTCCTCAGCGACAAGAGGTGAAGCTACAGCAGGACATC
AAGGGCCGTCAGCGAAAGCCCTCGGCCGCCTCGTACGATTGGAGCGTGCA
GAACATCGGTTTCTGCGATATCAAGTCGGCGCAACGTATACGACTGGAGA
GGGAAAACCGCGACGGCTACGTGCGAGCGTCGTTTGCTTCGCGCGACGCG
GATAGGCCCTACATAGCGGAGGCG
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