mRNA_P-fluviatile_contig8.14597.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14597.1
Unique NamemRNA_P-fluviatile_contig8.14597.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:3028664..3029207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.9880638-UTR-P-fluviatile_contig8:3028663..30289071622817218.9880638-UTR-P-fluviatile_contig8:3028663..3028907Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3028664..3028907 +
1693571544.2143424-UTR-P-fluviatile_contig8:3028663..30289071693571544.2143424-UTR-P-fluviatile_contig8:3028663..3028907Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 3028664..3028907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.9982214-CDS-P-fluviatile_contig8:3028907..30292071622817218.9982214-CDS-P-fluviatile_contig8:3028907..3029207Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3028908..3029207 +
1693571544.2248309-CDS-P-fluviatile_contig8:3028907..30292071693571544.2248309-CDS-P-fluviatile_contig8:3028907..3029207Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 3028908..3029207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14597.1prot_P-fluviatile_contig8.14597.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 3028908..3029207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14597.1

>prot_P-fluviatile_contig8.14597.1 ID=prot_P-fluviatile_contig8.14597.1|Name=mRNA_P-fluviatile_contig8.14597.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=100bp
MNIGCCEEQEERTSSSGAAPLARCDQRRLSLSLSFSSFARFTSSLYPKMC
LSLLPLALSLSWFLRCTSFQGCFSPSSFLLSLTHIHTVNSYTVPHPAEHR
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mRNA from alignment at P-fluviatile_contig8:3028664..3029207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14597.1 ID=mRNA_P-fluviatile_contig8.14597.1|Name=mRNA_P-fluviatile_contig8.14597.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=544bp|location=Sequence derived from alignment at P-fluviatile_contig8:3028664..3029207+ (Porterinema fluviatile SAG_2381)
CGGGGCCCCTTCTCCGCACGTCACTGCGGCTTGGCCTACGCTCTTCCACG
CAGCTTGAGACATTTGACCGACGCGTTCCGTGAGAAAATCAATTTCGTAC
GAAGAGAGATCTACGGGAAGGAAAATCGCGCGATGGATGGACGTTAAGTT
GTTGCTCTGCTCAATCAAATCAAGGAAAGCCACAATTCGGACTGTGACAA
TCTCAACACATAAGTGATTCCACACTTCGTCGTTCCCTGAGACGATGAAC
ATTGGCTGTTGTGAGGAACAGGAAGAGAGGACGAGTTCGTCTGGCGCAGC
ACCTCTCGCCAGGTGTGACCAAAGGCGTCTCTCGCTCTCCCTGTCTTTCT
CTTCGTTCGCTCGCTTTACCTCATCCCTGTACCCGAAGATGTGTCTGTCT
CTTCTTCCTCTCGCTCTCTCTCTCTCTTGGTTCCTTCGCTGCACCTCATT
CCAAGGATGTTTCTCTCCATCTTCTTTCCTTCTCTCTCTCACACACATAC
ACACTGTCAATTCGTACACCGTACCTCATCCCGCCGAGCACCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:3028664..3029207+

>mRNA_P-fluviatile_contig8.14597.1 ID=mRNA_P-fluviatile_contig8.14597.1|Name=mRNA_P-fluviatile_contig8.14597.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=600bp|location=Sequence derived from alignment at P-fluviatile_contig8:3028664..3029207+ (Porterinema fluviatile SAG_2381)
ATGAACATTGGCTGTTGTGAGGAACAGGAAGAGAGGACGAGTTCGTCTGG
CGCAGCACCTCTCGCCAGGTGTGACCAAAGGCGTCTCTCGCTCTCCCTGT
CTTTCTCTTCGTTCGCTCGCTTTACCTCATCCCTGTACCCGAAGATGTGT
CTGTCTCTTCTTCCTCTCGCTCTCTCTCTCTCTTGGTTCCTTCGCTGCAC
CTCATTCCAAGGATGTTTCTCTCCATCTTCTTTCCTTCTCTCTCTCACAC
ACATACACACTGTCAATTCGTACACCGTACCTCATCCCGCCGAGCACCGC
ATGAACATTGGCTGTTGTGAGGAACAGGAAGAGAGGACGAGTTCGTCTGG
CGCAGCACCTCTCGCCAGGTGTGACCAAAGGCGTCTCTCGCTCTCCCTGT
CTTTCTCTTCGTTCGCTCGCTTTACCTCATCCCTGTACCCGAAGATGTGT
CTGTCTCTTCTTCCTCTCGCTCTCTCTCTCTCTTGGTTCCTTCGCTGCAC
CTCATTCCAAGGATGTTTCTCTCCATCTTCTTTCCTTCTCTCTCTCACAC
ACATACACACTGTCAATTCGTACACCGTACCTCATCCCGCCGAGCACCGC
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