mRNA_P-fluviatile_contig8.14592.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14592.1
Unique NamemRNA_P-fluviatile_contig8.14592.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: D8LHH2_ECTSI (CPLD51 protein required for cyt b6 assembly n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH2_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 1.670e-142
Identity = 245/317 (77.29%), Postives = 263/317 (82.97%), Query Frame = 1 
Query:  175 TRSIAMAL-TASLATSSHGLLPAKGVGGAAFSSGTPAFVARSG-RFFAVSGHLSGGPSTCHPSSHRRHRHSTVTTTAGLPSLSMLAAPSEVTDVAIAAHHVVSAALPSFLLSDEA----AGSVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQFPNIGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLLEGEAP 1107
            TRS  +AL T SLA S  G          A ++GTPAFVA SG RFF+V+G   G P +   +     RH    +TAG P LSM+ AP EV D A+AAHH VSA LPSFLLSDEA    AGSVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYK+ATYELPGPASTEKGAE +KQTAAKIIAYFQANNYKIKEAGE+ITFEGA+QASKGQAFFLVFCTALSFATLALVLQIQFP IGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLE+SDDD++TEIYIT A EELDRLSKTMGYMEKG +RVKGLLEGEAP
Sbjct:    6 TRSALLALSTVSLAASGQGFF--------AGTTGTPAFVATSGSRFFSVNG---GRPVSSRRARAAYQRH--WPSTAGSP-LSMVVAPHEVVDAAVAAHHAVSA-LPSFLLSDEAVAEAAGSVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKDATYELPGPASTEKGAESVKQTAAKIIAYFQANNYKIKEAGETITFEGAIQASKGQAFFLVFCTALSFATLALVLQIQFPAIGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLETSDDDTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLEGEAP 307
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: A0A835YMB8_9STRA (CPLD51 protein required for cyt b6 assembly n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB8_9STRA)

HSP 1 Score: 279 bits (713), Expect = 5.650e-87
Identity = 137/198 (69.19%), Postives = 159/198 (80.30%), Query Frame = 1 
Query:  502 SDEAAGSVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQFPNIGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLLE 1095
            +D    SV YSK SYY TLGLY+LSFPGLWSV+KRA KTKYKE  Y + GPA+    A+P+KQ AA+++AYFQANNYKI  AGE I FEGAVQAS+ Q FFLVFCT L   TL+LVLQIQFP+ G YW+LLTLLSPYAGVYYW N  R DKAQVRLE++DDD+  EI ITA EEELDR++KTMGY +KG +RVKG+LE
Sbjct:   80 ADPLGASVSYSKSSYYATLGLYLLSFPGLWSVIKRAAKTKYKERVYTVAGPAAAV-AAKPVKQVAAEVVAYFQANNYKIVSAGEEIVFEGAVQASRSQGFFLVFCTFLCLGTLSLVLQIQFPDFGTYWYLLTLLSPYAGVYYWNNAQRKDKAQVRLETTDDDTTVEIRITAGEEELDRMAKTMGYQQKGMIRVKGILE 276
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: A0A7S2RI62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RI62_9STRA)

HSP 1 Score: 219 bits (559), Expect = 9.550e-64
Identity = 119/233 (51.07%), Postives = 154/233 (66.09%), Query Frame = 1 
Query:  481 ALPSFLLSDEAAGSVGYSKF-SYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQFPNIG-----NYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLLEGEAPDVPVPAAVGFNEAAAPQE 1161
            AL S  L+  AA       + S Y TL LY++SFPGL+S+VKRATK K ++ TYE+PGP    +GA PL+  AA+I AYFQANNYK+ +A ++I F+G ++ SK QAFFL FCT + F TLAL+L IQ P IG     NYWFL  L +PYAGVYYWQN    D+ +VRL++SDD+  TE+ + A +EELD+ +  M Y EKGK+RV+G+ E   P      AV     AAP E
Sbjct:   76 ALGSLALASTAADYQFTGSYASLYATLALYLISFPGLFSLVKRATKVKPEQRTYEMPGPGV--EGAMPLRNVAAEIFAYFQANNYKVIDAADTIVFKGVLEKSKSQAFFLSFCTLVGFGTLALILSIQVPKIGPLEIGNYWFLSCLSAPYAGVYYWQNAQNEDEVRVRLQTSDDERKTEVIVQAGKEELDKFASVMNYDEKGKIRVRGIFEQATPSAETEVAV----QAAPAE 302
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: A0A7S3XQU3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQU3_HETAK)

HSP 1 Score: 217 bits (552), Expect = 2.140e-62
Identity = 116/228 (50.88%), Postives = 154/228 (67.54%), Query Frame = 1 
Query:  490 SFLLSDEAAGSVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAK-------------------IIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQFPNIGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLLEGEAPDVP 1116
            S L+++EA  S  YSK SYYTTLGLYV+SFPGL+S+VKR+ K    + TYELPGP S + GA+ +KQ AA+                   ++AYF+A NY+I  AGE+I+F+G +  S  QAFFL FCT +   +LALVL IQF  IG  +F +TLL+PYAGVYYW+N  R + A+V+LE +DD+   ++ I A +EEL+R ++TM Y EKG VRVKG+ EGE  D P
Sbjct:   70 SNLIAEEATTS--YSKASYYTTLGLYVISFPGLYSLVKRSVKASNVKKTYELPGP-SADTGAKEMKQIAAEAVREAYLPIIEAAAKQLKQVVAYFRAQNYEIVNAGETISFKGTLSKSSSQAFFLTFCTFIGLGSLALVLSIQFQEIGQNFFWMTLLAPYAGVYYWKNADREETAEVKLEIADDERTVDLVIAAGKEELERFARTMDYCEKGMVRVKGIFEGEEMDAP 294
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: A0A7S1VVB4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVB4_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.680e-61
Identity = 110/201 (54.73%), Postives = 143/201 (71.14%), Query Frame = 1 
Query:  511 AAGSVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQF-----PNIGN-YWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLLE 1095
            A+G +GYSK SYYT LGLY +SFPGLWS +KR+T  K K  TY  PG  + E   + L+Q A +I+AY +ANNY +  AGE+ITF G VQ S  QAFFLVFCTAL  A+LALVL IQF     P IG   W+ L LLSPYAGVYYW+ G R D  +V+L ++DDD+  EI +  +EEEL+R+ +T+G+ EKG ++V+G+L+
Sbjct:   60 ASGEIGYSKISYYTILGLYAMSFPGLWSQIKRSTTAKVKRKTYISPGENAPE--GKDLRQQAGEIMAYMKANNYDVVNAGETITFRGLVQRSVSQAFFLVFCTALGMASLALVLDIQFQDAVLPMIGKPNWYFLVLLSPYAGVYYWKAGDRVDDCEVKLTANDDDTENEIAVQGSEEELERMWRTLGWQEKGMIKVEGVLD 258
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: B8LDY3_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDY3_THAPS)

HSP 1 Score: 209 bits (533), Expect = 1.720e-61
Identity = 105/188 (55.85%), Postives = 138/188 (73.40%), Query Frame = 1 
Query:  529 YSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQFPNIGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLL 1092
            YSK SYYTTL LY  SFPGLWS +KR+TK K K  TY   G A+  +G + L+Q A +I+AY +ANNY++ EAGE+ITF G V  S  QAFFL FCTAL  A+LALVLQIQF ++   WF LTLLSPYAG+YYW++G R D  +V+L ++DDD++ EI I   +EE++R+ +T+   EKG V+V+G+L
Sbjct:    1 YSKASYYTTLALYAASFPGLWSQIKRSTKAKVKRKTYVSAGEAA--EGGKELRQQAGEIMAYMKANNYEVAEAGETITFRGLVARSTSQAFFLTFCTALGMASLALVLQIQFQDVDFNWFYLTLLSPYAGIYYWRSGDRVDDMKVKLAANDDDTLNEITIEGNDEEIERMWRTLDLQEKGMVKVEGIL 186
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: A0A7R9ZEM2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZEM2_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.800e-61
Identity = 106/196 (54.08%), Postives = 146/196 (74.49%), Query Frame = 1 
Query:  529 YSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQF-----PNIGN-YWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLLEG 1098
            YSK+S+YTTLG+YV+SFPGLWS +KR+TK K K  TY   G     +G + ++Q A +I+AY +ANNY+++EAGE+ITF+G VQ S  QAFFLVFCTAL  A+LALVLQIQF     P IG   W+ L LLSPYAG+YYW++G R D+ +V+L ++DD+++ E+ I   ++ELDR+ + +   EKG V+V+GLL+G
Sbjct:   26 YSKWSFYTTLGVYVMSFPGLWSQIKRSTKAKVKRKTYVSDG--ENAEGGKDMRQQAGEIMAYMKANNYEVEEAGETITFKGLVQQSTSQAFFLVFCTALGLASLALVLQIQFQDLVLPAIGKPNWYYLVLLSPYAGIYYWKSGDREDEIKVKLATNDDETLNEVTIEGNDDELDRMWRALDLREKGMVKVEGLLQG 219
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: A0A7S2B231_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B231_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.070e-60
Identity = 109/203 (53.69%), Postives = 146/203 (71.92%), Query Frame = 1 
Query:  490 SFLLSDEAAG-SVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQFPNIGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLLE 1095
            + LLS+ +A  S   S  S Y TLGLY+LSFPGL S+VKRATK   K+ TY L GPA+ +  A+ ++Q AA+I+AYFQANNYK+ +AGE I F+G  Q S  QAFFL FCT +   +L+LVLQIQ P +G YW+L+ L SPYAGVYYWQN  ++D+ +VRL+++DDD   E+ I   +E+L+R  +T+ Y EKG +RVKG+ E
Sbjct:   65 NMLLSESSADYSFQGSYASLYATLGLYLLSFPGLISLVKRATKKDIKQKTYTLAGPAAED--AKSMRQVAAEIMAYFQANNYKVDDAGEVIVFKGVTQQSTSQAFFLSFCTLIGLGSLSLVLQIQVPQVGAYWWLMCLGSPYAGVYYWQNAQQDDEIRVRLQATDDDKECEVTIQGDKEQLERFQQTLQYNEKGMIRVKGIFE 265
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: K0SQW6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQW6_THAOC)

HSP 1 Score: 208 bits (529), Expect = 1.630e-59
Identity = 110/193 (56.99%), Postives = 137/193 (70.98%), Query Frame = 1 
Query:  529 YSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQF-----PNIGN-YWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGL 1089
            YSK SYYTTL LY  SFPGLWS VKR+TK K K  TY  PG     +G +  +Q A +I+AY +ANNY++ +AGE I F+G VQ SK QAFFL FCTAL  A+LALVLQIQF     P IG   WFLLTLLSPYAG+YYW++G R D  +V+L S+DDD+M EI +   +EE+DR+ + +   EKG VRV+G+
Sbjct:   96 YSKASYYTTLALYAASFPGLWSQVKRSTKAKIKRKTYVSPG--ENAEGGKTQRQQAGEIMAYMKANNYEVADAGEKIIFKGLVQQSKSQAFFLTFCTALGMASLALVLQIQFQDLELPVIGKPNWFLLTLLSPYAGIYYWRSGDRVDDFEVKLSSNDDDTMNEITVQGNDEEIDRMWRALELQEKGMVRVEGV 286
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BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Match: A0A7S2XLP2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLP2_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.110e-58
Identity = 105/195 (53.85%), Postives = 140/195 (71.79%), Query Frame = 1 
Query:  523 VGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEGAVQASKGQAFFLVFCTALSFATLALVLQIQFPNI----GNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGKVRVKGLLE 1095
            V YSK SYYTTLGLY LSFPGLWS +KR+T  K K  T+   G A   +G + L+Q A +I+AY +ANNY++ EAGE+ITF+G V  S  QAFFL FCTAL  A+LALVLQIQF N+    G  WF L L+SPYAG+YYW++G R D+ +V+L  +D+D+  EI I   ++E++R+ +T+   EKG V+++GLLE
Sbjct:   46 VTYSKASYYTTLGLYALSFPGLWSQIKRSTAAKTKRKTFVSSGEAV--EGGKDLRQQAGEIMAYMKANNYEVVEAGETITFQGLVAKSTSQAFFLTFCTALGMASLALVLQIQFQNVELPFGANWFYLVLISPYAGIYYWRSGDRLDECKVKLVGNDEDTENEITIEGNDDEIERMWRTLELQEKGMVKIEGLLE 238
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH2_ECTSI1.670e-14277.29CPLD51 protein required for cyt b6 assembly n=2 Ta... [more]
A0A835YMB8_9STRA5.650e-8769.19CPLD51 protein required for cyt b6 assembly n=1 Ta... [more]
A0A7S2RI62_9STRA9.550e-6451.07Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3XQU3_HETAK2.140e-6250.88Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1VVB4_9STRA1.680e-6154.73Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B8LDY3_THAPS1.720e-6155.85Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A7R9ZEM2_9STRA1.800e-6154.08Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2B231_9STRA1.070e-6053.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K0SQW6_THAOC1.630e-5956.99Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2XLP2_9STRA1.110e-5853.85Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2988595..2994092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.5
Seed ortholog evalue1.4e-117
Seed eggNOG ortholog2880.D8LHH2
Preferred nameCCB1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0010190,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071840
EggNOG free text desc.Cofactor assembly of complex C subunit B
EggNOG OGs2AZTV@1,2QR1Q@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionCPLD51 protein required for cyt b6 assembly
Ec32 orthologEc-11_004090.1
Exons6
Model size1633
Cds size1002
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14592.1prot_P-fluviatile_contig8.14592.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2988766..2993632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817253.3259187-UTR-P-fluviatile_contig8:2988594..29887651622817253.3259187-UTR-P-fluviatile_contig8:2988594..2988765Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2988595..2988765 +
1693571736.385057-UTR-P-fluviatile_contig8:2988594..29887651693571736.385057-UTR-P-fluviatile_contig8:2988594..2988765Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2988595..2988765 +
1622817253.4039865-UTR-P-fluviatile_contig8:2993632..29940921622817253.4039865-UTR-P-fluviatile_contig8:2993632..2994092Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2993633..2994092 +
1693571736.4858365-UTR-P-fluviatile_contig8:2993632..29940921693571736.4858365-UTR-P-fluviatile_contig8:2993632..2994092Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2993633..2994092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817253.3371458-CDS-P-fluviatile_contig8:2988765..29889251622817253.3371458-CDS-P-fluviatile_contig8:2988765..2988925Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2988766..2988925 +
1693571736.403385-CDS-P-fluviatile_contig8:2988765..29889251693571736.403385-CDS-P-fluviatile_contig8:2988765..2988925Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2988766..2988925 +
1622817253.3484337-CDS-P-fluviatile_contig8:2990003..29902921622817253.3484337-CDS-P-fluviatile_contig8:2990003..2990292Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2990004..2990292 +
1693571736.4119833-CDS-P-fluviatile_contig8:2990003..29902921693571736.4119833-CDS-P-fluviatile_contig8:2990003..2990292Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2990004..2990292 +
1622817253.3601441-CDS-P-fluviatile_contig8:2990825..29909661622817253.3601441-CDS-P-fluviatile_contig8:2990825..2990966Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2990826..2990966 +
1693571736.4289846-CDS-P-fluviatile_contig8:2990825..29909661693571736.4289846-CDS-P-fluviatile_contig8:2990825..2990966Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2990826..2990966 +
1622817253.3726342-CDS-P-fluviatile_contig8:2991774..29919271622817253.3726342-CDS-P-fluviatile_contig8:2991774..2991927Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2991775..2991927 +
1693571736.444225-CDS-P-fluviatile_contig8:2991774..29919271693571736.444225-CDS-P-fluviatile_contig8:2991774..2991927Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2991775..2991927 +
1622817253.3835905-CDS-P-fluviatile_contig8:2992509..29926091622817253.3835905-CDS-P-fluviatile_contig8:2992509..2992609Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2992510..2992609 +
1693571736.457974-CDS-P-fluviatile_contig8:2992509..29926091693571736.457974-CDS-P-fluviatile_contig8:2992509..2992609Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2992510..2992609 +
1622817253.393614-CDS-P-fluviatile_contig8:2993473..29936321622817253.393614-CDS-P-fluviatile_contig8:2993473..2993632Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2993474..2993632 +
1693571736.468977-CDS-P-fluviatile_contig8:2993473..29936321693571736.468977-CDS-P-fluviatile_contig8:2993473..2993632Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2993474..2993632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14592.1

>prot_P-fluviatile_contig8.14592.1 ID=prot_P-fluviatile_contig8.14592.1|Name=mRNA_P-fluviatile_contig8.14592.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=334bp
MTRSIAMALTASLATSSHGLLPAKGVGGAAFSSGTPAFVARSGRFFAVSG
HLSGGPSTCHPSSHRRHRHSTVTTTAGLPSLSMLAAPSEVTDVAIAAHHV
VSAALPSFLLSDEAAGSVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTK
YKEATYELPGPASTEKGAEPLKQTAAKIIAYFQANNYKIKEAGESITFEG
AVQASKGQAFFLVFCTALSFATLALVLQIQFPNIGNYWFLLTLLSPYAGV
YYWQNGSRNDKAQVRLESSDDDSMTEIYITAAEEELDRLSKTMGYMEKGK
VRVKGLLEGEAPDVPVPAAVGFNEAAAPQETEA*
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mRNA from alignment at P-fluviatile_contig8:2988595..2994092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14592.1 ID=mRNA_P-fluviatile_contig8.14592.1|Name=mRNA_P-fluviatile_contig8.14592.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5498bp|location=Sequence derived from alignment at P-fluviatile_contig8:2988595..2994092+ (Porterinema fluviatile SAG_2381)
CTTGCCTCACACAGCGCAAACGCACCTACTCTCCTCCTGCGACATACGGT
GGTTCCAAGATTCCATCTACTGATCAACTTGGACTTTCTGAGATTTTCTT
TGAACTTTCGGCGTGCGGCGCCAACGATTCAGAAGCTGAGCAGAGCGGGC
GAGGGGAGCAATCAAACAAACATGACGCGGAGCATCGCGATGGCTCTGAC
AGCCAGTCTCGCGACCTCAAGCCATGGCCTTCTGCCGGCGAAGGGAGTTG
GGGGTGCGGCGTTTTCCTCAGGAACCCCAGCATTTGTGGCGAGAAGCGGC
CGCTTCTTCGCAGTTAGCGGGCACTTGTCAGGTGAGATGGTGTTGCAGTC
GACAGGCTGGAGAGAAGTGCCAGCGATCAGCGAACCTGACGAGGTTGAAC
CACACAACCGTTTAAGCGTGGCGGCCCATTTGCCACACACACGGAATCCT
TGTATATCGTACTCGCATAGTGGTTTTCCGAGCATGCTTGCACTGTTTGT
TCGGGCGAGCTTTCTGGGGCCCTTCTCTAGAGCACACACTCCTGATTTCA
CGCTTGTTGTGTACATCTCGGAGCACGTGTAATACCGTTTACCCCAGCCA
TGTCTGTAGCTCCGCAAGAACAAGTGGTCGGCTTGGATTTGACCCACAAC
GCGCGCGCACGCCTCACACGCGCGCTTGAATAAGATTTCGCAGCCTTCCT
CTCTTGAATACTTGTGTCGTGTGGCACTCTTGTTGTCGCGTATGACGTCG
GAAATACCTACTGAAATATGTGCAGGCATGGAGCGGAGGATGGTCGTCCG
GTGTTGAAAATCGCACAGAGTTTGTCGTGAGGCACCGCTCGCTGAAAATT
CTGCTTCCATGAGCACCATCCTTAAACACCACATGATTCACCACGGCACA
AGGTTGTCGTGTCCCGTTGTTCTGCATGTCGGCATTTTTTGACAGGACCT
CCTCGTCCACTCGCGCAGAAACATACCAATCAAGGACGCCGTTGTTGCGA
TGACTCGTATTGTGATCGGGCGGTATTTATCGCGGTGTACTGGTGTACGA
ATTCGTGAGCGACGATAATTTTTCCATTTCATACGCCGTACTCGTGCACT
GCAGAAGAGGCGATGGTTTGTGGTTTCTGTGATATCGAATTCTGAAATCG
ATTTGCGTAAAGCAATCAATATAAATATGGCATCGCAGGAGGGTGGGAGG
CTAGTGTTAAACGAGTCCCTTTCTGTTTGACCTCCCTTCGGAACTGCCTG
GAAGAAACAGTGGAGCACCGGTTTCGTGGACTGGAAAGAGAAGGACAGAC
AGAAATCAGGCGCACATGAAGAAATGTCGAAATTTATTTTCGTCTGTGCC
ATCCTCCGCTCTGATGTTTATCACACACCCCATTTGTCGATTCCTCGTTC
CCTGCCAAGGGGGTCCAAGCACGTGCCACCCGAGCAGCCACCGCCGGCAT
CGACATTCCACCGTGACGACCACGGCAGGGCTGCCGTCGCTGTCCATGCT
GGCCGCGCCGTCGGAAGTCACCGACGTCGCGATCGCTGCGCACCACGTGG
TGTCGGCCGCGTTGCCGTCGTTCCTCCTCTCGGACGAAGCGGCGGGTAGC
GTGGGGTACTCCAAGTTCAGCTACTACACCACGCTGGGGCTGTACGTGCT
TTCATTCCCGGGTCTCTGGTCCGTGGTGAAGCGGGCTACGAAGACAAAGT
GAGCGGTCGAGGAAGGACGCTGTGGTTTTCGTTTTTGCCCCAAGGCGATT
CCTCTCTCACCAGACACGTGCTTGTTCTCCCGGATGAGGGGGTGTGATCG
ATATCATCGGAAAAGGTTTCGCTTTTGAGATTTGTATCGGTGCCGCTCTC
GCCAGAAGTCTCGCTCTTATCTCGGGAAGAAAGAAAAGGGCTAGGGAGCA
TACGGGCAGCAAAAATATCGATCTCTTCCGTAGTACATTCCCTGCGATCA
ACCGCGATACGAGGGCATAGTTTTTCCCACCAAGCTCAAGTACGCTGCAA
GCAGACGCGCGGGCGTGCTGTTTCTTTGCACCATTTCCGCCATGCGTAGT
CCCTTATGGGCACTTCACCTATCACCCGCACTATCTGCCTTGGTACCCGT
CCTCCATGCCGCACTGCGGACGTGGTCCAGCGAAAGGCTGGGTTGCCTCG
TCCCGGCCATGAGTGTTTGCAACGATCGAGTGCATCCCGACTCTTCCGTC
CCCCATACCTTCATGCTACCGTCACCGAAAGGTATAAGGAGGCGACGTAT
GAGCTTCCCGGCCCTGCGTCGACGGAAAAAGGAGCTGAGCCGCTTAAACA
GACGGCGGCAAAGATCATCGCGTACTTTCAGGCCAACAACTACAAGATAA
AGGAGGCGGGTGAATCCATCACGTGAGGGCGCAATCGAGAAAGATGAATA
AGCTCAACGTGTCACTCTGCTTTAAAAAGCACGGCTTACTGTTCCGATAG
CACGGTGTGTGTCAAACAGACGAGTCTCAAATCATGTTGAATCGAGGTTA
CATCATGAACGAGGCAAAAAGTTGTGGACAAGCGTGGCTTTGTGTGTTTT
TTTCCGGAAACAGAAAACCGGTTGTGAAAGTCGGGCGGTTCGACCAGTCG
TGTCGAGGACTCAACAAGGGAGCCTCAGTGTGGTAGGTTTGTGCCCGGCT
CGGTGTAGGTTACAGTTACGGGATTTTAGATAGAAATACGACGAACGGTG
GTCGGCAAACTTTCGTCCGAGAAAAGAAGAGTGGGCGCTGAAAAGGAATA
TACCGCTCCAGCCTGGCGCAGAAAGGACACGTTTGCTGAAATGCCGGGTA
TCTGCTTTACAACCGAAGTACGACGGTGGCGGCGAAGGGCTGAGGAACAA
GTATACGGCTGCACAAGAGGTTTAAGATATGATGAGACTCGCGACTAGCA
CACGAGTGTCTACTGTCACCGCAAGAGAGTCGAAGCATCGCTGCACCTCG
GATGGGTGTCCAACGGTCAACCACATGCGACGCACAACTGCGTCTGGCGC
ACGCTCTCGCGACCCTGCCTCTTCGTCGTTCTGTTTCCAACTAGCGTAAT
GGATCGATTTATGAGGAATTTCGGGAATCTTTTTTCAAACGCCACACCTG
AAATGCGTTATGAAGAAACCTCCCGTTGTCTCTCTCTCTCCCACCCGCAC
TCACATCGATCCGCTTGATTTGTTTTCCAGATTTGAGGGCGCCGTCCAAG
CGAGCAAGGGCCAAGCCTTTTTCCTAGTGTTCTGCACGGCACTGTCGTTC
GCGACGTTGGCGCTCGTGCTCCAGATTCAGTTCCCTAACATCGGCAACTA
CTGGTTCCTGCTCACCCTCCTGTCACCCTACGCGTGAGTCCGTGTATGAA
AAGCCACGACGGTTGGCGGCCTCCTCGTCAATGAGGTAGAACTGGGTGTG
GTTTCTCAGTGACTTGTGTTCCGCTGCACGTGCGTGCGGTGAACAATGGT
GATCATGCTTTTTATGCTGGTGAAGGATGAACATCCGGTGCGGTATTGTG
TTGTCGCGTTGTTGACAAGCGCGGCTGCATGCGGCGGCTGCTGCGTTGCG
CTCCTGACATGGTCATCTGTGCGCAGCTGTTGTATCCACGGTGGTACGAC
AAGAACTAGGTCGCGCTATGTTGCTCGTTGGAAGCGCATATCGTGCCCGC
TCGCTTATTGCCTTGGAGGTGCATGACGATAATTTTGGCATGGTTGGTAC
TTTTTCAGTTCTTTCCTTCCCGAGCTCGCCCGCTTACTTACGTGGCTCCT
GGCTTACAGGTGTCTATTTGCGAACAACATGCCCCAACGTCGTCGGAGAT
TGCTCCCCTTGACGAACGCGCGTCAACGTTGGCGAATGTAGTACACCCAC
AGGATTGGCAGTGTATTGTTCTCGCTTTTTGACTTGCCCTTGCACCGTCT
CGGCGGTCCTTGCAGTGGTGTGTATTACTGGCAAAACGGCTCGAGGAACG
ACAAGGCGCAGGTGCGGCTAGAGTCTTCAGACGACGACTCTATGACGGAG
ATTTACATCACAGCGGTGAGACGCATTTTTCAGCTTTTCGCGGTGTACCG
CGTGAACACTGATGCAGAATCCGTCGCTGCATTTCCAAGAGAGGAAGCAC
AGGACGAGGCGAAAATTCTACCACTGTCTGTCTCGAGGGCCGAAGGCTGC
TGAAATTTTGTCTCCGTTTACTGGCGTGCCCTAATAGTCCTCCTCGCGTG
TGAAATGTCAGCGTGTAGCTTTGTCAAAGGATAATCCAAATGCCTAAGCA
TTTACTCCGTGGGAATTGCTTTATTTCGGGAGCGGATGAAACCAAACACA
TCAACGGTAGGTTGCTTGCGCTGAACCACCAGCGTGACACTTGAATATTT
GCTCTTGAGCGCAGCGTCATTTTGGTTCCGTCATTACTTTGAACAGCACC
CAGTACTCTTTAGGGTTTACTACCTTCCAGAGCCCGCCCCTGCGCAAGTG
TGGAGTTGTCACCGCTAATTACACCTCTGGCGAAAAAGCACGCAAATCCA
TCGCAGGCCCTTATTGACCGATTTCTGGGGTACCTCCGCCTTGAACAAAT
GGAACAAGGTCTGTGTATTCCTTAATAGATCGAAAGTAAGCCAGAGCCGG
GCGGAACCAGAACACGTTTGATGAAATCCTATTTGACCTTTGATGTCGGG
AGTGAGGTCCACGTCGGCTGGACCACCTCTTCGTCGACATCAAGGTTGAC
ATTTGGTGGTTCCCGCATCAACAAAAAGCCACATCCAAAGGTGAATATCG
CGGTTTTTGTCGGCTCGTCTACTTATGCCCGCTTCCGTTGTCACCTCGAC
ATACCTTACCGTGAGTCTTCTGACCGGGCTTGTTTTTTGTTGCTCATGCG
AACTACGAAACGCTCACCGAAACATTAAGGCGGAGGAAGAATTGGACCGC
TTGTCGAAGACCATGGGCTACATGGAGAAGGGCAAAGTCAGGGTGAAGGG
GCTGCTGGAAGGGGAGGCCCCCGACGTGCCCGTGCCCGCCGCTGTGGGTT
TCAATGAGGCAGCAGCGCCTCAAGAGACGGAGGCATAAAATTAGACCCTG
ATGTTCGATTCGAAAAGCGCGTTCCCAAATTTTATCTCCCAACGCGTGGA
TCGATCGAATTTCTCCATGCCAACGAGAGGTGATCGTTCTTAGGGTAGTT
CCGTCGGGAGATGAAATTTTGTGTGGGGGTTCAAGCGCCGAGTGTGGTTC
GTTTCTTTTTTTGCGATCGGAAGGATGTGAATCAATGGCAATACAGTTGA
TTGGCGAAGATGAAATGGTTATCTCCAACACCAAAGCTTTTCGGCTTCTT
CCTGTCGTCGTGATAATTTGGTGAACGTAGGCCTAGACTTATTGATCGTC
GACACTCAGAGGTGGGCTTTACCGGCCGAGGATCGTTTTAGCGCCTTCAA
AAGAAACATAAAACCACGAGCAATGCATCTTTTTCACATCGTTGCAAAGC
CGGCCTTCCTGAAATATGGTATGGCTGCCATCATACGCGGGCCAGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2988595..2994092+

>mRNA_P-fluviatile_contig8.14592.1 ID=mRNA_P-fluviatile_contig8.14592.1|Name=mRNA_P-fluviatile_contig8.14592.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2004bp|location=Sequence derived from alignment at P-fluviatile_contig8:2988595..2994092+ (Porterinema fluviatile SAG_2381)
ATGACGCGGAGCATCGCGATGGCTCTGACAGCCAGTCTCGCGACCTCAAG
CCATGGCCTTCTGCCGGCGAAGGGAGTTGGGGGTGCGGCGTTTTCCTCAG
GAACCCCAGCATTTGTGGCGAGAAGCGGCCGCTTCTTCGCAGTTAGCGGG
CACTTGTCAGATGACGCGGAGCATCGCGATGGCTCTGACAGCCAGTCTCG
CGACCTCAAGCCATGGCCTTCTGCCGGCGAAGGGAGTTGGGGGTGCGGCG
TTTTCCTCAGGAACCCCAGCATTTGTGGCGAGAAGCGGCCGCTTCTTCGC
AGTTAGCGGGCACTTGTCAGGGGGTCCAAGCACGTGCCACCCGAGCAGCC
ACCGCCGGCATCGACATTCCACCGTGACGACCACGGCAGGGCTGCCGTCG
CTGTCCATGCTGGCCGCGCCGTCGGAAGTCACCGACGTCGCGATCGCTGC
GCACCACGTGGTGTCGGCCGCGTTGCCGTCGTTCCTCCTCTCGGACGAAG
CGGCGGGTAGCGTGGGGTACTCCAAGTTCAGCTACTACACCACGCTGGGG
CTGTACGTGCTTTCATTCCCGGGTCTCTGGTCCGTGGTGAAGCGGGCTAC
GAAGACAAAGGGGTCCAAGCACGTGCCACCCGAGCAGCCACCGCCGGCAT
CGACATTCCACCGTGACGACCACGGCAGGGCTGCCGTCGCTGTCCATGCT
GGCCGCGCCGTCGGAAGTCACCGACGTCGCGATCGCTGCGCACCACGTGG
TGTCGGCCGCGTTGCCGTCGTTCCTCCTCTCGGACGAAGCGGCGGGTAGC
GTGGGGTACTCCAAGTTCAGCTACTACACCACGCTGGGGCTGTACGTGCT
TTCATTCCCGGGTCTCTGGTCCGTGGTGAAGCGGGCTACGAAGACAAAGT
ATAAGGAGGCGACGTATGAGCTTCCCGGCCCTGCGTCGACGGAAAAAGGA
GCTGAGCCGCTTAAACAGACGGCGGCAAAGATCATCGCGTACTTTCAGGC
CAACAACTACAAGATAAAGGAGGCGGGTGAATCCATCACGTATAAGGAGG
CGACGTATGAGCTTCCCGGCCCTGCGTCGACGGAAAAAGGAGCTGAGCCG
CTTAAACAGACGGCGGCAAAGATCATCGCGTACTTTCAGGCCAACAACTA
CAAGATAAAGGAGGCGGGTGAATCCATCACATTTGAGGGCGCCGTCCAAG
CGAGCAAGGGCCAAGCCTTTTTCCTAGTGTTCTGCACGGCACTGTCGTTC
GCGACGTTGGCGCTCGTGCTCCAGATTCAGTTCCCTAACATCGGCAACTA
CTGGTTCCTGCTCACCCTCCTGTCACCCTACGCATTTGAGGGCGCCGTCC
AAGCGAGCAAGGGCCAAGCCTTTTTCCTAGTGTTCTGCACGGCACTGTCG
TTCGCGACGTTGGCGCTCGTGCTCCAGATTCAGTTCCCTAACATCGGCAA
CTACTGGTTCCTGCTCACCCTCCTGTCACCCTACGCTGGTGTGTATTACT
GGCAAAACGGCTCGAGGAACGACAAGGCGCAGGTGCGGCTAGAGTCTTCA
GACGACGACTCTATGACGGAGATTTACATCACAGCGTGGTGTGTATTACT
GGCAAAACGGCTCGAGGAACGACAAGGCGCAGGTGCGGCTAGAGTCTTCA
GACGACGACTCTATGACGGAGATTTACATCACAGCGGCGGAGGAAGAATT
GGACCGCTTGTCGAAGACCATGGGCTACATGGAGAAGGGCAAAGTCAGGG
TGAAGGGGCTGCTGGAAGGGGAGGCCCCCGACGTGCCCGTGCCCGCCGCT
GTGGGTTTCAATGAGGCAGCAGCGCCTCAAGAGACGGAGGCATAAGCGGA
GGAAGAATTGGACCGCTTGTCGAAGACCATGGGCTACATGGAGAAGGGCA
AAGTCAGGGTGAAGGGGCTGCTGGAAGGGGAGGCCCCCGACGTGCCCGTG
CCCGCCGCTGTGGGTTTCAATGAGGCAGCAGCGCCTCAAGAGACGGAGGC
ATAA
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