mRNA_P-fluviatile_contig8.14590.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14590.1
Unique NamemRNA_P-fluviatile_contig8.14590.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig8.14590.1 vs. uniprot
Match: A0A6H5L347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L347_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 6.470e-140
Identity = 263/470 (55.96%), Postives = 322/470 (68.51%), Query Frame = 2 
Query:   23 MSAAAVGLTSQRTPTSLRELLEKVPQVLDAQTPGALHLESRASTDAMEAMARAEARLLKSADTFFDPLFRVSMLDNLGRKDNPFAEPSDEEFPDKAPVEELKAGRRRVDAIANRVVSERSPLKASAERVQEQTARLHERAEELTLQAEAIAAAVSXXXXXXXXXGGTSIFDTVYAIDGATGADEKAREAE-RNSDEALRKGAEALALAEARKVALLEEVAARRVDVEREQREVDALEKEQAVVAXXXXXXXXXXXXG------GRRTEASRHTENLVGVGGMSEAQLEACVREEEALVKRNAGIRGWYEATVANVELLGGIRVSHRLLFGSAGGGEVEGIELMVDLGFGHIMEVTLSTMDGRLTSVQLFHGHNSSVVGAAAEVEAKGGVSPSELEELRQTADALPAPHNLRMLVRECMGRARCSAVVEEHVRRMSKRYLTTYTAPSREVRVTLNDGLVATFHLHADFPKV 1411
            MSA     +    PTSLRELLE+VPQVL+AQ+PGALH++SRAS DAME+++RAEARLLKSA+TF    F VS+L+NLGR+D PF EP DE+FPD+A  ++L+A RRRVD I +R +SE+ PL++SAERV+EQ   L ER + LTLQ EA  A  S            SI D VYA D    ADE  REA+ RN +  LR+ ++AL   EA++  L E  AA R ++  +QREVD LE+EQ  VA            G      G R EASR  ENLVGV GM EA+LEAC REE+ALV+RN GIR WY ATVA VE LGG+R+SHRLLFG+  GG VEG+E MV LG G  MEVT+S +DG+L+S QL HG      G AA      G+SPSELEE+R+ ADALPAP NL  LV E + RA C+AV EEHVR++ +RYLT Y +PSREV VT+  G+VA FHL AD+PKV
Sbjct:    1 MSATVDSASRPTVPTSLRELLERVPQVLNAQSPGALHMQSRASADAMESVSRAEARLLKSAETFHPHTFSVSVLENLGRRD-PFIEPGDEDFPDQAADDDLEAERRRVDEITDRALSEQQPLRSSAERVEEQAMHLQERIKGLTLQVEADPALRSSGGARL------SIMDKVYAGDDR--ADE--READIRNEETLLREDSQALGAVEAKRTVLAERAAAVRAELLLQQREVDLLEREQHAVALAAAETAATGAGGAAAGSNGWRAEASREMENLVGVAGMPEARLEACEREEDALVRRNTGIRDWYAATVAEVENLGGVRLSHRLLFGAGAGGRVEGMEFMVGLGSGLTMEVTVSAVDGKLSSAQLCHGQGG---GGAAGF---AGISPSELEEMRRAADALPAPQNLGKLVIEALSRATCAAVREEHVRQVRRRYLTGYRSPSREVTVTMGAGIVACFHLAADYPKV 453
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L347_9PHAE6.470e-14055.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2971530..2973960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004100.1
Exons3
Model size1420
Cds size1410
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14590.1prot_P-fluviatile_contig8.14590.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2971530..2973950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817253.0996006-CDS-P-fluviatile_contig8:2971529..29726591622817253.0996006-CDS-P-fluviatile_contig8:2971529..2972659Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2971530..2972659 -
1693571732.3298032-CDS-P-fluviatile_contig8:2971529..29726591693571732.3298032-CDS-P-fluviatile_contig8:2971529..2972659Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2971530..2972659 -
1622817253.1101325-CDS-P-fluviatile_contig8:2973367..29735671622817253.1101325-CDS-P-fluviatile_contig8:2973367..2973567Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2973368..2973567 -
1693571732.3466828-CDS-P-fluviatile_contig8:2973367..29735671693571732.3466828-CDS-P-fluviatile_contig8:2973367..2973567Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2973368..2973567 -
1622817253.1202052-CDS-P-fluviatile_contig8:2973870..29739501622817253.1202052-CDS-P-fluviatile_contig8:2973870..2973950Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2973871..2973950 -
1693571732.3561554-CDS-P-fluviatile_contig8:2973870..29739501693571732.3561554-CDS-P-fluviatile_contig8:2973870..2973950Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2973871..2973950 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817253.1305716-UTR-P-fluviatile_contig8:2973950..29739601622817253.1305716-UTR-P-fluviatile_contig8:2973950..2973960Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2973951..2973960 -
1693571732.3673909-UTR-P-fluviatile_contig8:2973950..29739601693571732.3673909-UTR-P-fluviatile_contig8:2973950..2973960Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2973951..2973960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14590.1

>prot_P-fluviatile_contig8.14590.1 ID=prot_P-fluviatile_contig8.14590.1|Name=mRNA_P-fluviatile_contig8.14590.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=470bp
MSSNMSAAAVGLTSQRTPTSLRELLEKVPQVLDAQTPGALHLESRASTDA
MEAMARAEARLLKSADTFFDPLFRVSMLDNLGRKDNPFAEPSDEEFPDKA
PVEELKAGRRRVDAIANRVVSERSPLKASAERVQEQTARLHERAEELTLQ
AEAIAAAVSASGGGGDAGGGTSIFDTVYAIDGATGADEKAREAERNSDEA
LRKGAEALALAEARKVALLEEVAARRVDVEREQREVDALEKEQAVVASTA
AAAAAAGSDGGRRTEASRHTENLVGVGGMSEAQLEACVREEEALVKRNAG
IRGWYEATVANVELLGGIRVSHRLLFGSAGGGEVEGIELMVDLGFGHIME
VTLSTMDGRLTSVQLFHGHNSSVVGAAAEVEAKGGVSPSELEELRQTADA
LPAPHNLRMLVRECMGRARCSAVVEEHVRRMSKRYLTTYTAPSREVRVTL
NDGLVATFHLHADFPKVRR*
back to top

mRNA from alignment at P-fluviatile_contig8:2971530..2973960-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14590.1 ID=mRNA_P-fluviatile_contig8.14590.1|Name=mRNA_P-fluviatile_contig8.14590.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2431bp|location=Sequence derived from alignment at P-fluviatile_contig8:2971530..2973960- (Porterinema fluviatile SAG_2381)
AACACACCAAATGTCTTCAAACATGTCGGCTGCCGCCGTGGGTCTGACGT
CCCAGCGAACGCCGACTTCACTGCGGGAGCTTTTGGAGAAGTGAGCATGA
TGCTGTCTGTGGTTTGATTCGGTGTAACCGCGCTGGTTCGAACGGGCCGC
GGTGCGGCGGAGTGAAAGACAGCAATCCCACAGGCCGAATGCCGAATTTT
GGGCACACACCTGCACCACTTGCGACAGCAGCAGTTTCTCTTTGCATCTT
TACACTTGAGCCTCCATCTGTAGCCATCGTTGTGCGCGGAAGTAGACACA
GCTAGCACTCCGGCTTTTGTGTTTGTGGTGAATTTCTGGAAGTCATGACG
GCCTCTGTGCGCTCTCGTTGTGTCAACACCTTCCCCCTCTCAGAGTTCCC
CAGGTGCTCGATGCACAGACTCCCGGCGCTCTGCACTTGGAGTCACGCGC
AAGCACCGATGCCATGGAGGCTATGGCCCGTGCTGAGGCACGCTTGCTCA
AGTCCGCCGATACGTTCTTTGATCCGCTCTTCCGAGTGTCAATGCTGGAC
AATCTCGGGCGCAAGGACAATCCTTTCGCAGAGCCGAGCGATGGTGCGTC
CGTGCTAACATGCGAGTGCTTCGTTTTTTTTATTGCAGGCCGGTAGCGTG
GTGGCGGCAGCAGCCGGAAAGTTGCGACAACTTGCCAGCATCCTTACGCC
ACCGTTTCCCATAAGAATTGTATTTGGCCGCACACCAGCAACAGTCTTGC
GGTTTAGTCGTGTGCCACTTCTGAACTTCACACGCTGCAAACATGCAAAC
ACAGCCCCGGGGTCTGCCCCTCATTCCAACCTACGGGCACTGGAAAATCG
ATGTTGAGAAATACTCCGTATATCGTAAGTGCTTCGCAGTCTCCCACTGG
GAGGAACAGGATTGGCGAAGAGGGTGGGGGGGGAGGGTGTTCATCATGTG
CGACGCCGACCTTCAGCGAAGCCTGCTTACCATTAGAGCAACTGAGGCTC
AGCATCTGTTTTGTGCTCTTTCGGGTCCTGAGTTTTATGGTTTTGGTTTT
CGAGTTTGATGGTGCTGCTTCTTTCGTGTTTGAAAGGAGTTAGCCGGCAC
TGATACAGCACGGCTTCGTCTGGAAGGGTCATAGCAGCAAAAGTCACACC
GACGGTGATGCTCTTTTCATCAGAGCCTCAACATGAAACTGGCAGAGGCC
TGGGATGTACTAGGGGGCACCTTTCCGTTTTCGCCTACCTGCTGCTCGTA
CAAACTAGATAATTCACATCTGCTGTGTAATTTTACACCGCCGACGTGCA
GAGGAATTCCCGGACAAAGCGCCGGTCGAGGAGCTCAAGGCGGGGCGGCG
GCGTGTAGACGCCATCGCGAACCGCGTCGTCTCGGAGCGGTCCCCTCTGA
AAGCCTCCGCCGAGAGGGTCCAGGAGCAGACGGCGCGTCTGCACGAGCGG
GCAGAGGAGCTGACGCTGCAGGCAGAAGCAATCGCCGCTGCAGTTTCCGC
CTCCGGCGGCGGCGGCGACGCGGGGGGGGGGACGTCGATTTTCGACACGG
TTTACGCCATCGACGGCGCCACCGGCGCCGACGAGAAGGCGCGCGAGGCC
GAACGCAACAGCGACGAGGCGCTGCGGAAGGGGGCGGAGGCTCTTGCCCT
GGCCGAGGCGAGGAAAGTGGCGCTGCTGGAGGAGGTGGCCGCCAGGAGGG
TGGACGTCGAGCGGGAGCAGCGGGAGGTGGACGCTCTTGAGAAGGAGCAA
GCGGTGGTGGCCTCGACGGCGGCGGCAGCGGCGGCGGCGGGATCGGACGG
CGGGCGGAGGACGGAGGCGTCCAGGCACACAGAAAATCTCGTCGGGGTGG
GGGGCATGTCGGAGGCCCAGCTGGAGGCCTGCGTGCGGGAGGAGGAAGCC
CTCGTGAAGAGGAACGCCGGTATCCGGGGCTGGTACGAGGCAACTGTCGC
CAACGTGGAGCTCTTGGGAGGCATCCGAGTGTCACACCGGCTGCTCTTCG
GAAGCGCAGGCGGTGGCGAGGTGGAGGGGATTGAGCTCATGGTGGACCTA
GGCTTCGGCCACATTATGGAGGTGACCTTGTCTACGATGGACGGGCGACT
GACTTCGGTGCAACTTTTCCATGGCCACAACAGCTCGGTAGTGGGGGCGG
CGGCGGAGGTGGAGGCGAAGGGAGGTGTTTCGCCGTCGGAGCTGGAGGAG
CTGAGGCAAACCGCGGACGCGCTGCCCGCCCCGCATAACTTACGGATGCT
CGTGCGCGAGTGCATGGGTCGGGCACGTTGCTCCGCAGTCGTAGAGGAGC
ACGTGCGGCGGATGAGTAAGAGGTACCTCACTACGTACACGGCCCCATCG
CGCGAGGTCAGGGTCACCTTGAACGACGGGTTGGTAGCAACTTTCCACCT
GCACGCGGACTTCCCGAAGGTGCGCCGTTGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:2971530..2973960-

>mRNA_P-fluviatile_contig8.14590.1 ID=mRNA_P-fluviatile_contig8.14590.1|Name=mRNA_P-fluviatile_contig8.14590.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2820bp|location=Sequence derived from alignment at P-fluviatile_contig8:2971530..2973960- (Porterinema fluviatile SAG_2381)
ATGTCTTCAAACATGTCGGCTGCCGCCGTGGGTCTGACGTCCCAGCGAAC
GCCGACTTCACTGCGGGAGCTTTTGGAGAAATGTCTTCAAACATGTCGGC
TGCCGCCGTGGGTCTGACGTCCCAGCGAACGCCGACTTCACTGCGGGAGC
TTTTGGAGAAAGTTCCCCAGGTGCTCGATGCACAGACTCCCGGCGCTCTG
CACTTGGAGTCACGCGCAAGCACCGATGCCATGGAGGCTATGGCCCGTGC
TGAGGCACGCTTGCTCAAGTCCGCCGATACGTTCTTTGATCCGCTCTTCC
GAGTGTCAATGCTGGACAATCTCGGGCGCAAGGACAATCCTTTCGCAGAG
CCGAGCGATGAGTTCCCCAGGTGCTCGATGCACAGACTCCCGGCGCTCTG
CACTTGGAGTCACGCGCAAGCACCGATGCCATGGAGGCTATGGCCCGTGC
TGAGGCACGCTTGCTCAAGTCCGCCGATACGTTCTTTGATCCGCTCTTCC
GAGTGTCAATGCTGGACAATCTCGGGCGCAAGGACAATCCTTTCGCAGAG
CCGAGCGATGAGGAATTCCCGGACAAAGCGCCGGTCGAGGAGCTCAAGGC
GGGGCGGCGGCGTGTAGACGCCATCGCGAACCGCGTCGTCTCGGAGCGGT
CCCCTCTGAAAGCCTCCGCCGAGAGGGTCCAGGAGCAGACGGCGCGTCTG
CACGAGCGGGCAGAGGAGCTGACGCTGCAGGCAGAAGCAATCGCCGCTGC
AGTTTCCGCCTCCGGCGGCGGCGGCGACGCGGGGGGGGGGACGTCGATTT
TCGACACGGTTTACGCCATCGACGGCGCCACCGGCGCCGACGAGAAGGCG
CGCGAGGCCGAACGCAACAGCGACGAGGCGCTGCGGAAGGGGGCGGAGGC
TCTTGCCCTGGCCGAGGCGAGGAAAGTGGCGCTGCTGGAGGAGGTGGCCG
CCAGGAGGGTGGACGTCGAGCGGGAGCAGCGGGAGGTGGACGCTCTTGAG
AAGGAGCAAGCGGTGGTGGCCTCGACGGCGGCGGCAGCGGCGGCGGCGGG
ATCGGACGGCGGGCGGAGGACGGAGGCGTCCAGGCACACAGAAAATCTCG
TCGGGGTGGGGGGCATGTCGGAGGCCCAGCTGGAGGCCTGCGTGCGGGAG
GAGGAAGCCCTCGTGAAGAGGAACGCCGGTATCCGGGGCTGGTACGAGGC
AACTGTCGCCAACGTGGAGCTCTTGGGAGGCATCCGAGTGTCACACCGGC
TGCTCTTCGGAAGCGCAGGCGGTGGCGAGGTGGAGGGGATTGAGCTCATG
GTGGACCTAGGCTTCGGCCACATTATGGAGGTGACCTTGTCTACGATGGA
CGGGCGACTGACTTCGGTGCAACTTTTCCATGGCCACAACAGCTCGGTAG
TGGGGGCGGCGGCGGAGGTGGAGGCGAAGGGAGGTGTTTCGCCGTCGGAG
CTGGAGGAGCTGAGGCAAACCGCGGACGCGCTGCCCGCCCCGCATAACTT
ACGGATGCTCGTGCGCGAGTGCATGGGTCGGGCACGTTGCTCCGCAGTCG
TAGAGGAGCACGTGCGGCGGATGAGTAAGAGGTACCTCACTACGTACACG
GCCCCATCGCGCGAGGTCAGGGTCACCTTGAACGACGGGTTGGTAGCAAC
TTTCCACCTGCACGCGGACTTCCCGAAGGTGCGCCGTTGAAGGAATTCCC
GGACAAAGCGCCGGTCGAGGAGCTCAAGGCGGGGCGGCGGCGTGTAGACG
CCATCGCGAACCGCGTCGTCTCGGAGCGGTCCCCTCTGAAAGCCTCCGCC
GAGAGGGTCCAGGAGCAGACGGCGCGTCTGCACGAGCGGGCAGAGGAGCT
GACGCTGCAGGCAGAAGCAATCGCCGCTGCAGTTTCCGCCTCCGGCGGCG
GCGGCGACGCGGGGGGGGGGACGTCGATTTTCGACACGGTTTACGCCATC
GACGGCGCCACCGGCGCCGACGAGAAGGCGCGCGAGGCCGAACGCAACAG
CGACGAGGCGCTGCGGAAGGGGGCGGAGGCTCTTGCCCTGGCCGAGGCGA
GGAAAGTGGCGCTGCTGGAGGAGGTGGCCGCCAGGAGGGTGGACGTCGAG
CGGGAGCAGCGGGAGGTGGACGCTCTTGAGAAGGAGCAAGCGGTGGTGGC
CTCGACGGCGGCGGCAGCGGCGGCGGCGGGATCGGACGGCGGGCGGAGGA
CGGAGGCGTCCAGGCACACAGAAAATCTCGTCGGGGTGGGGGGCATGTCG
GAGGCCCAGCTGGAGGCCTGCGTGCGGGAGGAGGAAGCCCTCGTGAAGAG
GAACGCCGGTATCCGGGGCTGGTACGAGGCAACTGTCGCCAACGTGGAGC
TCTTGGGAGGCATCCGAGTGTCACACCGGCTGCTCTTCGGAAGCGCAGGC
GGTGGCGAGGTGGAGGGGATTGAGCTCATGGTGGACCTAGGCTTCGGCCA
CATTATGGAGGTGACCTTGTCTACGATGGACGGGCGACTGACTTCGGTGC
AACTTTTCCATGGCCACAACAGCTCGGTAGTGGGGGCGGCGGCGGAGGTG
GAGGCGAAGGGAGGTGTTTCGCCGTCGGAGCTGGAGGAGCTGAGGCAAAC
CGCGGACGCGCTGCCCGCCCCGCATAACTTACGGATGCTCGTGCGCGAGT
GCATGGGTCGGGCACGTTGCTCCGCAGTCGTAGAGGAGCACGTGCGGCGG
ATGAGTAAGAGGTACCTCACTACGTACACGGCCCCATCGCGCGAGGTCAG
GGTCACCTTGAACGACGGGTTGGTAGCAACTTTCCACCTGCACGCGGACT
TCCCGAAGGTGCGCCGTTGA
back to top