mRNA_P-fluviatile_contig8.14586.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14586.1
Unique NamemRNA_P-fluviatile_contig8.14586.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig8.14586.1 vs. uniprot
Match: A0A6H5KVW5_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVW5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.860e-24
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 3 
Query:  639 QAVQEYLISELSSRDKTRQGLFSTRTRPPANAPRQHNSSDCGILMLHVMEELSTGSVEELGRLNQEEIMSLRLQLVAKI 875
            +AVQ+YL+SELSSRDKTRQ LF+ R RPP NAPRQHNSSDCG+LMLHVMEELSTG  + L  L QEEI SLRL L+A I
Sbjct:  527 EAVQQYLVSELSSRDKTRQELFTPRPRPPDNAPRQHNSSDCGVLMLHVMEELSTGPTDALAPLTQEEIQSLRLVLIANI 605
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVW5_9PHAE3.860e-2474.68ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2908292..2910847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPeptidase C48, SUMO/Sentrin/Ubl1
Ec32 orthologEc-11_004050.1
Exons2
Model size2343
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14586.1prot_P-fluviatile_contig8.14586.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2909751..2910416 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817252.3352954-UTR-P-fluviatile_contig8:2908291..29097501622817252.3352954-UTR-P-fluviatile_contig8:2908291..2909750Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2908292..2909750 -
1693571731.6856031-UTR-P-fluviatile_contig8:2908291..29097501693571731.6856031-UTR-P-fluviatile_contig8:2908291..2909750Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2908292..2909750 -
1622817252.3699853-UTR-P-fluviatile_contig8:2910416..29108471622817252.3699853-UTR-P-fluviatile_contig8:2910416..2910847Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2910417..2910847 -
1693571731.7145514-UTR-P-fluviatile_contig8:2910416..29108471693571731.7145514-UTR-P-fluviatile_contig8:2910416..2910847Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2910417..2910847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817252.34847-CDS-P-fluviatile_contig8:2909750..29098461622817252.34847-CDS-P-fluviatile_contig8:2909750..2909846Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2909751..2909846 -
1693571731.6936312-CDS-P-fluviatile_contig8:2909750..29098461693571731.6936312-CDS-P-fluviatile_contig8:2909750..2909846Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2909751..2909846 -
1622817252.360047-CDS-P-fluviatile_contig8:2910059..29104161622817252.360047-CDS-P-fluviatile_contig8:2910059..2910416Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2910060..2910416 -
1693571731.7043705-CDS-P-fluviatile_contig8:2910059..29104161693571731.7043705-CDS-P-fluviatile_contig8:2910059..2910416Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2910060..2910416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14586.1

>prot_P-fluviatile_contig8.14586.1 ID=prot_P-fluviatile_contig8.14586.1|Name=mRNA_P-fluviatile_contig8.14586.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=151bp
MPSPSYLPYLFNIGAAVFLVHFSWMILCRCLDLRIWLQVFRHSSANPSPA
CSRPPPSIISTCRLPPADEQAVQEYLISELSSRDKTRQGLFSTRTRPPAN
APRQHNSSDCGILMLHVMEELSTGSVEELGRLNQEEIMSLRLQLVAKIRE
*
back to top

mRNA from alignment at P-fluviatile_contig8:2908292..2910847-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14586.1 ID=mRNA_P-fluviatile_contig8.14586.1|Name=mRNA_P-fluviatile_contig8.14586.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2556bp|location=Sequence derived from alignment at P-fluviatile_contig8:2908292..2910847- (Porterinema fluviatile SAG_2381)
GATGCCCTTAGACGCGAGACGAGGGTTACATCCGCCGAGGCCGTGCGTAC
TGTTTCGCTTGAAGCTGCCCAAACACAGCTCCCCGTTTGAAGCAATTTTT
GAATGAAATGACGATTTAACCAAGGTAGCTGTCTAGACTCTTCAGTTAAC
GCTTTTGTGTATGGTGGATCCCTAGGCAAAGCTCAGACGCCGCTGCGTGT
TGACATTCGTTTTTCGTGCTTGCCAAGACAATGCTAGGGCTCTGCATGTC
ACTCTGAACGGTGGGGGAAGTGTGGTGTTCATGTTCATTCTTGTGTATCG
GTAGAAGGCCACGTGGAGATTTCCAGGTGTAACACCTTTCGCCCGTTTTT
TTCATGTTCCGGAGTTTCATTTCGGTTGGAAGTAACGCCGAGATCGACAA
GTGTGTACGATCGTCTGAAGTGTAAAGCGGAATGCCGTCCCCTTCCTACC
TCCCGTATCTATTCAACATTGGAGCCGCCGTTTTCCTCGTGCACTTTTCA
TGGATGATCTTGTGTAGGTGTCTCGATCTTCGTATTTGGTTACAGGTGTT
TCGCCACTCCTCGGCCAACCCCTCCCCCGCGTGCTCGCGCCCGCCCCCGT
CGATCATCTCCACCTGCCGCCTCCCGCCTGCCGACGAACAGGCTGTGCAG
GAGTACCTCATCAGCGAGCTCAGCAGCCGCGACAAGACGCGGCAGGGGCT
CTTCTCCACGCGGACCCGCCCCCCGGCGAACGCCCCTCGCCAGCACAACA
GCAGTGACTGCGGAATCCTCATGCTGCACGTCATGGAGGTGCGATGTGTT
GCGGCGTAGGAGGCTGCTGCTGGTGGTGCCGTAATTTATGTCGCTTTTTT
CCAGCATAATGGGAGGACATTTTGACCATTAGTGTTTTACAGAGTTTTTG
GTCGATTTTTTACCGCGTGTGCCCTGACTATGAGTATCCCACCACTCCCC
CCTCCCGCTCGCTCCCTTCGTCCGACGATATTCTCCATTGTTTGCTTGCA
GGAGTTGTCGACCGGATCGGTCGAGGAGCTCGGGCGACTGAATCAGGAGG
AAATCATGTCCCTCCGGCTGCAGCTCGTCGCAAAGATTCGCGAGTGAGGT
GGTGAGGGGATGGAAGAGCTTCCTTCCGTTGCTGCTGCTGCTGTTGCTTG
CTGCCGCATCTCCTTCGCTGTACGTCACCGTCGCTCTGTTGGAGTCAAAT
CGTCTGCCTTCCTGGATGTCTCTCTGTGTGAGTCACATATTGTCTGCCAT
TCTAGGTGGGTACGAGCGTGCACTAGGCTCGAATACCACCGCGAGAAGGA
ACGATGATCGAGAGGGCCATCCACAGGGCGTACAGTTCCAATGGGCACTG
TGCCATGACGTTTGCTGCCGCTGATGCTGCACCACCCGGTAGTAATTGGC
TTTGGAACACAGCCTGAACCCCCGCAGAGAGGCTGATTGGCAGCGGCGCT
GGCTCCGTGGACGGGTTTGCGTCAGTATTGTGAGTGTGCGATGATGCCGA
TACGAGAGCTCTGGTCCGCGAAACCTCGATTGTCTCGAGCGTTGGGTAGC
TGGCAAGGCTTTGGATTTCGTGGCGCCACCGCTGTGCAAGACGTGCGCAT
CCAGCAACAGCCACGGGGACGCGAAGAGGTGACGTTAGCACAGCTATGTT
GTTGGAAGGGATCGAGTGGAATCACGGCGGTCCGGCGGGGCCTAGCGGGC
GCTCGGGTCCGTGAGGCGCCTTTTTTCTCTTGTCGACAGACCAGGTTAGG
TTGATGCCGGTGGGAAGGGCGCTTGACGCGTCGTTCGCCCCGTCTCCCTA
CATCTGTACAGGGTCCTTGTCGACACCTTCCTCCCAAACCTTTCTTTCGC
GAAAACGAAAGCGCGTGCAGACATCTCGTTACAAGGAAAGCAGAGGTGTT
ACTTCGAGTTTGGAAAGTCGTTGCCGTTTTCTCAGAAGCTTCAACTTGCC
GCGGAGAAGACAAGCTGATGATGTGAAAGCACGTTGCAAGGTTCTCGACA
TGCGTGCTCGTTTGTTCATACCTGGGTTGTTATCGCGCTTGCTCATGGGG
CTAGCCACCTGCTGCGTGGCGTATCTTTCAAGAGCGAGCCGCTGATGAGG
ATTTTCGTTGGTATCCGAATCTTCCAGCATTTGGGGGGGAGTCGGCGGCG
AGGGCGCAGGCTGGGTTTTCCACTGTTGCCTAAAGTTGCTGGTGTTGACG
TCGTGTGAAAGGGCCACCCAGTGCGGCCCAGCGGAGTGGTTGGAGATCAG
TGATTATCGTCCCTGTGTAAGGTGTTGTCGAAGCAGCGGTCTGTCTCACG
TGTTGTTGAGTATGTGTTCAGCGCGGTTCTCTGGTGTCGTGAGGTGGTAC
TTCGCATGCGGGACTGTGGAAGACCCGCTTGTGCGCAAAAAGGTTTGGTC
GACAGAAGATACACCTCCGGAGGTTTGAACCTAGACCAGAAAAACCACTA
CGGCGCGGGAGGGAAAGAAGGCGAGCAGCAACATGCGTCGGTGACGGTTC
GTGGTTCAGCATCATGTCCACCACGAGTTCCGTGAAAGAGCGAAGAACGA
GTGCAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:2908292..2910847-

>mRNA_P-fluviatile_contig8.14586.1 ID=mRNA_P-fluviatile_contig8.14586.1|Name=mRNA_P-fluviatile_contig8.14586.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=906bp|location=Sequence derived from alignment at P-fluviatile_contig8:2908292..2910847- (Porterinema fluviatile SAG_2381)
ATGCCGTCCCCTTCCTACCTCCCGTATCTATTCAACATTGGAGCCGCCGT
TTTCCTCGTGCACTTTTCATGGATGATCTTGTGTAGGTGTCTCGATCTTC
GTATTTGGTTACAGGTGTTTCGCCACTCCTCGGCCAACCCCTCCCCCGCG
TGCTCGCGCCCGCCCCCGTCGATCATCTCCACCTGCCGCCTCCCGCCTGC
CGACGAACAGGCTGTGCAGGAGTACCTCATCAGCGAGCTCAGCAGCCGCG
ACAAGACGCGGCAGGGGCTCTTCTCCACGCGGACCCGCCCCCCGGCGAAC
GCCCCTCGCCAGCACAACAGCAGTGACTGCGGAATCCTCATGCTGCACGT
CATGGAGATGCCGTCCCCTTCCTACCTCCCGTATCTATTCAACATTGGAG
CCGCCGTTTTCCTCGTGCACTTTTCATGGATGATCTTGTGTAGGTGTCTC
GATCTTCGTATTTGGTTACAGGTGTTTCGCCACTCCTCGGCCAACCCCTC
CCCCGCGTGCTCGCGCCCGCCCCCGTCGATCATCTCCACCTGCCGCCTCC
CGCCTGCCGACGAACAGGCTGTGCAGGAGTACCTCATCAGCGAGCTCAGC
AGCCGCGACAAGACGCGGCAGGGGCTCTTCTCCACGCGGACCCGCCCCCC
GGCGAACGCCCCTCGCCAGCACAACAGCAGTGACTGCGGAATCCTCATGC
TGCACGTCATGGAGGAGTTGTCGACCGGATCGGTCGAGGAGCTCGGGCGA
CTGAATCAGGAGGAAATCATGTCCCTCCGGCTGCAGCTCGTCGCAAAGAT
TCGCGAGTGAGAGTTGTCGACCGGATCGGTCGAGGAGCTCGGGCGACTGA
ATCAGGAGGAAATCATGTCCCTCCGGCTGCAGCTCGTCGCAAAGATTCGC
GAGTGA
back to top