mRNA_P-fluviatile_contig8.14573.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14573.1
Unique NamemRNA_P-fluviatile_contig8.14573.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2772248..2772987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14573.1prot_P-fluviatile_contig8.14573.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2772490..2772909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.8742948-UTR-P-fluviatile_contig8:2772247..27724891622817218.8742948-UTR-P-fluviatile_contig8:2772247..2772489Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2772248..2772489 +
1693571544.1266792-UTR-P-fluviatile_contig8:2772247..27724891693571544.1266792-UTR-P-fluviatile_contig8:2772247..2772489Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2772248..2772489 +
1622817218.8957107-UTR-P-fluviatile_contig8:2772909..27729871622817218.8957107-UTR-P-fluviatile_contig8:2772909..2772987Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2772910..2772987 +
1693571544.1448095-UTR-P-fluviatile_contig8:2772909..27729871693571544.1448095-UTR-P-fluviatile_contig8:2772909..2772987Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2772910..2772987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.885513-CDS-P-fluviatile_contig8:2772489..27729091622817218.885513-CDS-P-fluviatile_contig8:2772489..2772909Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2772490..2772909 +
1693571544.135962-CDS-P-fluviatile_contig8:2772489..27729091693571544.135962-CDS-P-fluviatile_contig8:2772489..2772909Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2772490..2772909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14573.1

>prot_P-fluviatile_contig8.14573.1 ID=prot_P-fluviatile_contig8.14573.1|Name=mRNA_P-fluviatile_contig8.14573.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=140bp
MSCVIEGVFPRSFGRRRVDICLESLLQQVRWWVKRTSQTFVEPIMLTLFA
RAKGLFLLRHGLRPARQTRSARHLLFAWGVSPSWSLGRKRSTPASDAASF
ILAGVDRQQLLLHTRAFSIIDCYVVHKSRRLPSFYVGVP*
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mRNA from alignment at P-fluviatile_contig8:2772248..2772987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14573.1 ID=mRNA_P-fluviatile_contig8.14573.1|Name=mRNA_P-fluviatile_contig8.14573.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=740bp|location=Sequence derived from alignment at P-fluviatile_contig8:2772248..2772987+ (Porterinema fluviatile SAG_2381)
ATCGAGTGGCTGCACGAAACCCTTCAGCTTTTCGGACTGCAGCAGCAGGT
GCGTGTGGGTGGGTGAAGAGGCCGCGGGAAGCATTGTTGAGAAAAAATCG
GGAATTACATAATCGTTCGTTCACCTTGTGCGCAAGTTCGGTTTCTGTCC
TTATGATTTGCTACAAGTGTGCCAGACATCGCAGGCGCTCTTGGTCCAAG
CTTTTTTTCTCGTGTTTGTGTTATTAATAGTGTGTTTCTTTGATGAGCTG
TGTCATCGAGGGTGTCTTTCCCCGAAGTTTCGGACGAAGGAGGGTTGACA
TTTGTTTGGAATCGCTGCTGCAGCAGGTGCGTTGGTGGGTGAAGCGAACA
TCTCAAACCTTTGTAGAACCGATCATGCTTACACTGTTCGCTCGCGCGAA
AGGTTTATTTCTACTGCGGCATGGCTTGCGACCAGCACGTCAGACACGCT
CTGCTCGCCACCTGCTTTTCGCGTGGGGGGTGTCGCCGTCTTGGAGTCTC
GGACGAAAACGGTCTACTCCAGCCTCCGATGCCGCGTCCTTTATCCTGGC
AGGGGTGGATAGGCAGCAATTACTCTTGCATACACGCGCCTTCTCGATCA
TTGATTGCTACGTGGTACATAAATCCCGCCGCCTACCATCGTTTTATGTC
GGAGTCCCTTAGAAATCATCCTAAGGTCACAATAGAATAGGCGACGGGCG
ACTATTGCAAAATGTTTCTCGTTCATCGCACCAAGCGCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2772248..2772987+

>mRNA_P-fluviatile_contig8.14573.1 ID=mRNA_P-fluviatile_contig8.14573.1|Name=mRNA_P-fluviatile_contig8.14573.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=840bp|location=Sequence derived from alignment at P-fluviatile_contig8:2772248..2772987+ (Porterinema fluviatile SAG_2381)
ATGAGCTGTGTCATCGAGGGTGTCTTTCCCCGAAGTTTCGGACGAAGGAG
GGTTGACATTTGTTTGGAATCGCTGCTGCAGCAGGTGCGTTGGTGGGTGA
AGCGAACATCTCAAACCTTTGTAGAACCGATCATGCTTACACTGTTCGCT
CGCGCGAAAGGTTTATTTCTACTGCGGCATGGCTTGCGACCAGCACGTCA
GACACGCTCTGCTCGCCACCTGCTTTTCGCGTGGGGGGTGTCGCCGTCTT
GGAGTCTCGGACGAAAACGGTCTACTCCAGCCTCCGATGCCGCGTCCTTT
ATCCTGGCAGGGGTGGATAGGCAGCAATTACTCTTGCATACACGCGCCTT
CTCGATCATTGATTGCTACGTGGTACATAAATCCCGCCGCCTACCATCGT
TTTATGTCGGAGTCCCTTAGATGAGCTGTGTCATCGAGGGTGTCTTTCCC
CGAAGTTTCGGACGAAGGAGGGTTGACATTTGTTTGGAATCGCTGCTGCA
GCAGGTGCGTTGGTGGGTGAAGCGAACATCTCAAACCTTTGTAGAACCGA
TCATGCTTACACTGTTCGCTCGCGCGAAAGGTTTATTTCTACTGCGGCAT
GGCTTGCGACCAGCACGTCAGACACGCTCTGCTCGCCACCTGCTTTTCGC
GTGGGGGGTGTCGCCGTCTTGGAGTCTCGGACGAAAACGGTCTACTCCAG
CCTCCGATGCCGCGTCCTTTATCCTGGCAGGGGTGGATAGGCAGCAATTA
CTCTTGCATACACGCGCCTTCTCGATCATTGATTGCTACGTGGTACATAA
ATCCCGCCGCCTACCATCGTTTTATGTCGGAGTCCCTTAG
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