mRNA_P-fluviatile_contig8.14571.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14571.1
Unique NamemRNA_P-fluviatile_contig8.14571.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2752530..2753036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14571.1prot_P-fluviatile_contig8.14571.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2752570..2752959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.8157814-UTR-P-fluviatile_contig8:2752529..27525691622817218.8157814-UTR-P-fluviatile_contig8:2752529..2752569Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2752530..2752569 +
1693571544.0851712-UTR-P-fluviatile_contig8:2752529..27525691693571544.0851712-UTR-P-fluviatile_contig8:2752529..2752569Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2752530..2752569 +
1622817218.8408911-UTR-P-fluviatile_contig8:2752959..27530361622817218.8408911-UTR-P-fluviatile_contig8:2752959..2753036Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2752960..2753036 +
1693571544.1133635-UTR-P-fluviatile_contig8:2752959..27530361693571544.1133635-UTR-P-fluviatile_contig8:2752959..2753036Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2752960..2753036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.8256493-CDS-P-fluviatile_contig8:2752569..27529591622817218.8256493-CDS-P-fluviatile_contig8:2752569..2752959Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2752570..2752959 +
1693571544.0963116-CDS-P-fluviatile_contig8:2752569..27529591693571544.0963116-CDS-P-fluviatile_contig8:2752569..2752959Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2752570..2752959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14571.1

>prot_P-fluviatile_contig8.14571.1 ID=prot_P-fluviatile_contig8.14571.1|Name=mRNA_P-fluviatile_contig8.14571.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=130bp
MKPRSISRDPPNRVGAPWRGEGEKERETDKEAKEEISTATSEWVPEGGEA
RHPGHTANSALAPRTTQTLTCSQAKPSLPGAPQPRTAFTGKGTSTTTHEY
LHQHNHDDQDHNRDHRSRHLHHHQQLICE*
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mRNA from alignment at P-fluviatile_contig8:2752530..2753036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14571.1 ID=mRNA_P-fluviatile_contig8.14571.1|Name=mRNA_P-fluviatile_contig8.14571.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=507bp|location=Sequence derived from alignment at P-fluviatile_contig8:2752530..2753036+ (Porterinema fluviatile SAG_2381)
GGGGAAGTGAGAGCAAAACTCCCGTGTCAGCGGCGTGGGGATGAAACCAC
GCAGCATAAGTCGCGATCCGCCAAACAGAGTAGGGGCGCCGTGGAGAGGA
GAGGGGGAGAAAGAGCGAGAAACAGATAAGGAAGCGAAAGAGGAAATCAG
CACAGCGACTTCAGAATGGGTGCCAGAAGGAGGCGAAGCACGACATCCGG
GGCACACGGCGAATTCAGCGTTGGCACCGCGAACAACACAGACATTAACT
TGTAGCCAAGCCAAGCCTAGCCTACCAGGGGCTCCACAACCGCGTACGGC
TTTCACAGGCAAGGGAACATCGACAACAACCCACGAGTATCTACACCAAC
ACAACCACGATGACCAGGACCACAACCGTGACCACCGCAGCCGCCACCTC
CATCACCACCAACAACTAATATGCGAATGAAGCAAGCCATTTTGCGTTAT
ACCCTCGGTCGCCATATCAATAACCAACGCGCCAACAACACTCACTGGCG
ACTCCTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2752530..2753036+

>mRNA_P-fluviatile_contig8.14571.1 ID=mRNA_P-fluviatile_contig8.14571.1|Name=mRNA_P-fluviatile_contig8.14571.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig8:2752530..2753036+ (Porterinema fluviatile SAG_2381)
ATGAAACCACGCAGCATAAGTCGCGATCCGCCAAACAGAGTAGGGGCGCC
GTGGAGAGGAGAGGGGGAGAAAGAGCGAGAAACAGATAAGGAAGCGAAAG
AGGAAATCAGCACAGCGACTTCAGAATGGGTGCCAGAAGGAGGCGAAGCA
CGACATCCGGGGCACACGGCGAATTCAGCGTTGGCACCGCGAACAACACA
GACATTAACTTGTAGCCAAGCCAAGCCTAGCCTACCAGGGGCTCCACAAC
CGCGTACGGCTTTCACAGGCAAGGGAACATCGACAACAACCCACGAGTAT
CTACACCAACACAACCACGATGACCAGGACCACAACCGTGACCACCGCAG
CCGCCACCTCCATCACCACCAACAACTAATATGCGAATGAATGAAACCAC
GCAGCATAAGTCGCGATCCGCCAAACAGAGTAGGGGCGCCGTGGAGAGGA
GAGGGGGAGAAAGAGCGAGAAACAGATAAGGAAGCGAAAGAGGAAATCAG
CACAGCGACTTCAGAATGGGTGCCAGAAGGAGGCGAAGCACGACATCCGG
GGCACACGGCGAATTCAGCGTTGGCACCGCGAACAACACAGACATTAACT
TGTAGCCAAGCCAAGCCTAGCCTACCAGGGGCTCCACAACCGCGTACGGC
TTTCACAGGCAAGGGAACATCGACAACAACCCACGAGTATCTACACCAAC
ACAACCACGATGACCAGGACCACAACCGTGACCACCGCAGCCGCCACCTC
CATCACCACCAACAACTAATATGCGAATGA
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