mRNA_P-fluviatile_contig8.14569.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14569.1
Unique NamemRNA_P-fluviatile_contig8.14569.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig8.14569.1 vs. uniprot
Match: D7G642_ECTSI (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G642_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 6.710e-30
Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  181 NHVSR-PHQQQHPRQXXHRRRGIVRCFFGFGGAPNNSPPADYEAITSQAIAAVQAGLKKGERAMEVEFPPLASLNKINDGSAKNRKLAQENTISFTKKV 474
            +HVSR  H++QH R+        VRCFF FGG     PPA+Y+AI +QAIAAVQAGLK GE+AMEVEFPPLASLNKINDGSAKNR+LA+ENT+SF KK+
Sbjct:   46 HHVSRYHHRRQHQRE-------TVRCFFSFGGGAKKGPPANYDAIAAQAIAAVQAGLKSGEKAMEVEFPPLASLNKINDGSAKNRRLARENTLSFAKKL 137
[Close]
BLAST of mRNA_P-fluviatile_contig8.14569.1 vs. uniprot
Match: A0A836CID5_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.290e-16
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:  238 RGIVRCFFGFGGAPNNS-----PPADYEAITSQAIAAVQAGLKKGERAMEVEFPPLASLNKINDGSAKNRKLAQENTISFTKKV 474
            R  +RCFFGFG A ++S     PP DY A+ +QA AAV A LK G + MEV+FPPL +LNK+ DGSAKNRKL  E+  +F  K+
Sbjct:   50 RDTIRCFFGFGAAGSSSTGKLKPPKDYAAVHAQAAAAVTAALKAGVQRMEVDFPPLQALNKMGDGSAKNRKLTLESNSAFVTKL 133
[Close]
BLAST of mRNA_P-fluviatile_contig8.14569.1 vs. uniprot
Match: A0A7S2XUE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUE4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.430e-12
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  256 FFGFGGAPN----NSPPADYEAITSQAIAAVQAGLKKGERAMEVEFPPLASLNKINDGSAKNRKLAQENTISFTKKV 474
            FFG GG  +       P  YE +  QA+AAV A +KKGE+ MEVEFPPLA+LNK+ DGSAK+ K+ +E    F KK+
Sbjct:   48 FFGMGGGGSAGAKTGVPTSYEEVHKQAVAAVGAAIKKGEKKMEVEFPPLAALNKLGDGSAKSAKMIKEANAEFAKKL 124
[Close]
BLAST of mRNA_P-fluviatile_contig8.14569.1 vs. uniprot
Match: A0A6V1Q2S3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q2S3_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 4.870e-9
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  256 FFGFGGA---PNNSP--PADYEAITSQAIAAVQAGLKKGERAMEVEFPPLASLNKINDGSAKNRKLAQENTISFTKKV 474
             FG  G    PN +   P++Y+A+  QAI++V++ LKK +RA+EVEFPPL SLNK+ DGS K+++ A +    FT+K+
Sbjct:   54 LFGIMGKQSFPNRASGVPSNYDALHQQAISSVKSALKKDKRALEVEFPPLTSLNKLGDGSRKSQQQALQGNADFTRKL 131
[Close]
BLAST of mRNA_P-fluviatile_contig8.14569.1 vs. uniprot
Match: A0A7S0UD48_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UD48_HEMAN)

HSP 1 Score: 58.2 bits (139), Expect = 3.600e-6
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  292 PADYEAITSQAIAAVQAGLKKGERAMEVEFPPLASLNKINDGSAKNRKLAQENTISFTKKV 474
            P  Y+ I +QAI A+  GL  G   MEVEFPP+ SLNK++DGSA ++++ +   + F  KV
Sbjct:    3 PRSYDEIHAQAIDAIGVGLSGGVTRMEVEFPPIPSLNKLSDGSASSQRMVRNANVDFVLKV 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G642_ECTSI6.710e-3067.68DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CID5_9STRA4.290e-1654.76DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2XUE4_9STRA1.430e-1251.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1Q2S3_HETAK4.870e-946.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0UD48_HEMAN3.600e-645.90Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2737551..2739856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D7G642
EggNOG OGs2E7SF@1,2SEB9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_005050.1
Exons3
Model size1210
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14569.1prot_P-fluviatile_contig8.14569.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2737614..2739171 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817250.0724752-UTR-P-fluviatile_contig8:2737550..27376131622817250.0724752-UTR-P-fluviatile_contig8:2737550..2737613Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2737551..2737613 +
1693571724.9780388-UTR-P-fluviatile_contig8:2737550..27376131693571724.9780388-UTR-P-fluviatile_contig8:2737550..2737613Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2737551..2737613 +
1622817250.123355-UTR-P-fluviatile_contig8:2739171..27398561622817250.123355-UTR-P-fluviatile_contig8:2739171..2739856Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2739172..2739856 +
1693571725.776271-UTR-P-fluviatile_contig8:2739171..27398561693571725.776271-UTR-P-fluviatile_contig8:2739171..2739856Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2739172..2739856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817250.0849912-CDS-P-fluviatile_contig8:2737613..27378011622817250.0849912-CDS-P-fluviatile_contig8:2737613..2737801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2737614..2737801 +
1693571725.3648229-CDS-P-fluviatile_contig8:2737613..27378011693571725.3648229-CDS-P-fluviatile_contig8:2737613..2737801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2737614..2737801 +
1622817250.0953612-CDS-P-fluviatile_contig8:2738284..27384111622817250.0953612-CDS-P-fluviatile_contig8:2738284..2738411Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2738285..2738411 +
1693571725.3741264-CDS-P-fluviatile_contig8:2738284..27384111693571725.3741264-CDS-P-fluviatile_contig8:2738284..2738411Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2738285..2738411 +
1622817250.1095266-CDS-P-fluviatile_contig8:2739024..27391711622817250.1095266-CDS-P-fluviatile_contig8:2739024..2739171Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2739025..2739171 +
1693571725.764915-CDS-P-fluviatile_contig8:2739024..27391711693571725.764915-CDS-P-fluviatile_contig8:2739024..2739171Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2739025..2739171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14569.1

>prot_P-fluviatile_contig8.14569.1 ID=prot_P-fluviatile_contig8.14569.1|Name=mRNA_P-fluviatile_contig8.14569.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=154bp
MMKWTISYLAAMLLSCVRPATSLLPVLAPATAPDALQQRNHVSRPHQQQH
PRQQHHRRRGIVRCFFGFGGAPNNSPPADYEAITSQAIAAVQAGLKKGER
AMEVEFPPLASLNKINDGSAKNRKLAQENTISFTKKVRRRRRSVSVQQQN
HWP*
back to top

mRNA from alignment at P-fluviatile_contig8:2737551..2739856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14569.1 ID=mRNA_P-fluviatile_contig8.14569.1|Name=mRNA_P-fluviatile_contig8.14569.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2306bp|location=Sequence derived from alignment at P-fluviatile_contig8:2737551..2739856+ (Porterinema fluviatile SAG_2381)
GGCGACACTTGACACTGGAAGCTAAATACACGGGCAATCGCTCGAACGAC
CGGTGGCATTATAATGATGAAATGGACAATATCATATCTAGCCGCAATGC
TTCTTTCATGCGTCAGGCCTGCGACTTCTCTTTTGCCCGTTTTGGCCCCA
GCGACAGCTCCTGATGCACTTCAACAGCGGAATCATGTATCCCGTCCGCA
CCAGCAGCAGCACCCAAGGCAGCAGCACCACCGGCGGCGGGGGATTGTAA
GGTACCGAAAAGGCGTGTGCCGTCATAAACGGATTGACCCTTACGAAAAT
TGGAAATTTTGACCAGTCGTAGCGTACGTCAATCTACAGCGTCCTACATT
TTGGACACACCGTTGACTAACTGTACCGCATAGGCGAGGAGAGGGTGCAC
AGCACCCGGCAGCCGCTGCTGCTGGTTGGCTGCTTAAGGGGTACGGCGTT
GGTTGCAAAACGCAGTGGAAAATGCTCGCTACCTTTTCCGCGGACGCATT
TATCGATGTCAAAAGATCCAGATTGTGTGCCGCGCTACTTCAAGGTTTTC
ATTTTTGGACGCAGATGCATGCCCCCCCCGAGGTGTGTGTGCCACAGGCG
GATACAGAGTAGAGAGAAGACAGAGGGCGAGAGAGAAAGAGGAGAGAGAA
AAAAAGTGGACGGAGAGATGCCTGGACCACCTCCCCCTTAGAGAACATCC
GTTGCCGGTTCCGTCCCCTTTCGGCTCTCGACAGGTGTTTCTTCGGATTT
GGAGGAGCTCCGAACAACAGTCCCCCCGCAGACTACGAGGCCATCACCTC
TCAAGCCATTGCCGCGGTCCAGGCCGGGCTCAAGAAGGGCGAGAGGGCAA
TGGAAGTCGAGGTCAGAGAAATGGAATATTCATCCCAATTTCAAGCAGAA
GGAAGAAGAGTTCACGTGCGGGTAAGGGCGGGAACTGGCTTTTGCTGAAA
AGCGTTTGCCTTTAGGTTGTTCTTCGGACATTCCGGAAGGTCCAGCCGTC
TCGGTGGATTTTTGGTTTCTAATTTGATCACCTTTGCTGTACATTGTGTA
GTCCGCTGGTTCGCTTACGGGGCAAGACATCTACTGCATCGAAACAGAGG
CGGGGGACGCTGCCCGAGACTGGTCGACTTAGAGAAAAACACTTGTGTGT
GGACCTGAAATATTCCTACACAGGACCTGAATGTTCGAAATACTTCCATG
CAACAATGGAGCATCCGCACTAGGAGAGTTGAATTTCCACATCGCATCTT
CTTCCGAATGGAGCGGTTTCATCTTCGTTCCGGTTATCCGCCTCAGTTGT
GACATGGCATCCTCTGCTGCTGTCGGGTTCTCTGTAAACGCCAACACGGC
GCACAGCCTGGTTGAGGTGAGCTCCGCTGGCCGCCACGTCCGCATCCCGG
CGTCTCACCCGCCCCTTGTTTGCAAGTTACTTTCCCCGCTCTTTTTTTCT
CGCCGTTTATCTTTTGTGCATCAGTTCCCGCCCCTCGCTTCGCTGAACAA
GATCAACGACGGCAGCGCGAAGAACCGGAAGTTGGCGCAGGAGAACACGA
TCTCCTTCACAAAGAAGGTGCGGCGGAGACGAAGGAGCGTGTCGGTGCAG
CAGCAGAACCACTGGCCGTGATGCGCGAAAAGTCCTCCTCTTCTTCACGT
GGATAAAAATAGAAGATGGGCTCGACAGAGGTTGCAGGGTCAGCCAAGTT
GTCTCCAAACAAGGGCTTTGAGAAAATGCTCAAAAATGTGTCGGAGACGA
ACTCGCCCATGTGAGCCGAGAACCCCGGAGACGCATGTCTCGCGGCTGGG
GTTTCAGCCGGTGACGAAACATTACGCGCTTTTTATATCGTGGCATCATG
CGAAGAGATGGGCATTTTGCCGCGACGTTTCTCTTGTGTGCACCATGGGG
CGACCTAAACAAAAAATCTCCGACCCTCATGCTAGCCCCCCCCCGAAAAA
CCCACGAATTCTGTGCTTTATCCAACACGTTTGCTTATCAACAAATCTGT
GTAGGCTACTGGGACCGGGACCCGATGGGCGTCGAGAAGTACAGACATAT
TTCCATTCAGCAAGGACGCAGTCGGCCGACTCCCTTTCTGGGGTCTTCCT
TGCCTCAAAGGTAGTACTTCGCGGGTCCACAGACCCCGCACAGCTGTCAT
TTCGCGCGGCCACGGCCTGACAGGATCCGCGTCCGACTCTTTTTTGGTCT
ACGTGCATGCATGTGTACTTGGAGGGACTCCACCTGCAGGCGACGAACGC
CACACGAGCAAATAAATCACGGGAAGCACAAAAGAGGGCTCCTGCGGGAA
AGACCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:2737551..2739856+

>mRNA_P-fluviatile_contig8.14569.1 ID=mRNA_P-fluviatile_contig8.14569.1|Name=mRNA_P-fluviatile_contig8.14569.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=924bp|location=Sequence derived from alignment at P-fluviatile_contig8:2737551..2739856+ (Porterinema fluviatile SAG_2381)
ATGATGAAATGGACAATATCATATCTAGCCGCAATGCTTCTTTCATGCGT
CAGGCCTGCGACTTCTCTTTTGCCCGTTTTGGCCCCAGCGACAGCTCCTG
ATGCACTTCAACAGCGGAATCATGTATCCCGTCCGCACCAGCAGCAGCAC
CCAAGGCAGCAGCACCACCGGCGGCGGGGGATTGTAAGATGATGAAATGG
ACAATATCATATCTAGCCGCAATGCTTCTTTCATGCGTCAGGCCTGCGAC
TTCTCTTTTGCCCGTTTTGGCCCCAGCGACAGCTCCTGATGCACTTCAAC
AGCGGAATCATGTATCCCGTCCGCACCAGCAGCAGCACCCAAGGCAGCAG
CACCACCGGCGGCGGGGGATTGTAAGGTGTTTCTTCGGATTTGGAGGAGC
TCCGAACAACAGTCCCCCCGCAGACTACGAGGCCATCACCTCTCAAGCCA
TTGCCGCGGTCCAGGCCGGGCTCAAGAAGGGCGAGAGGGCAATGGAAGTC
GAGGTGTTTCTTCGGATTTGGAGGAGCTCCGAACAACAGTCCCCCCGCAG
ACTACGAGGCCATCACCTCTCAAGCCATTGCCGCGGTCCAGGCCGGGCTC
AAGAAGGGCGAGAGGGCAATGGAAGTCGAGTTCCCGCCCCTCGCTTCGCT
GAACAAGATCAACGACGGCAGCGCGAAGAACCGGAAGTTGGCGCAGGAGA
ACACGATCTCCTTCACAAAGAAGGTGCGGCGGAGACGAAGGAGCGTGTCG
GTGCAGCAGCAGAACCACTGGCCGTGATTCCCGCCCCTCGCTTCGCTGAA
CAAGATCAACGACGGCAGCGCGAAGAACCGGAAGTTGGCGCAGGAGAACA
CGATCTCCTTCACAAAGAAGGTGCGGCGGAGACGAAGGAGCGTGTCGGTG
CAGCAGCAGAACCACTGGCCGTGA
back to top