mRNA_P-fluviatile_contig8.14568.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14568.1
Unique NamemRNA_P-fluviatile_contig8.14568.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14568.1 vs. uniprot
Match: D8LIM3_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM3_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.950e-46
Identity = 107/145 (73.79%), Postives = 114/145 (78.62%), Query Frame = 1 
Query:    1 SGNTAFVLKAPLPSNSPTAASARRPAAAAESIAAATPMYATTHTSVAAT-AAAAPTPRTPWTCLAPGGKVGRAKVSLDRAVTSVAAPKSESQQQTKKXXXXXXXXXXXXEDAPMFNVLVIGDEEYNREHVVMSIQDIIPDTDNTR 432
            SG T FVLKAPLP+N   A++ RRPA AA       P+YA   T  A +   AAP PRTPWTCLAPGGKVGRAKVSL+RAVTSVAAPKSES      XXXXXXXXXXXXEDAPMF VLVIGDEEYNREHVVMSIQDI+PDTDNTR
Sbjct:   17 SGTTGFVLKAPLPNNGAAASAVRRPATAA------CPLYAARSTVAAGSDGVAAPPPRTPWTCLAPGGKVGRAKVSLERAVTSVAAPKSESAXXXXXXXXXXXXXXXXXEDAPMFQVLVIGDEEYNREHVVMSIQDIVPDTDNTR 155
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BLAST of mRNA_P-fluviatile_contig8.14568.1 vs. uniprot
Match: A0A836C8I8_9STRA (ClpS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.320e-15
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:  169 RTPWTCLAPGGKVGRAKVSLDRAVTSVAAPKSESQQQTKKXXXXXXXXXXXXE--DAPMFNVLVIGDEEYNREHVVMSIQDIIPDTDNTR 432
            R+P   LAPG KVG+AKV L +++ S+A PK E+Q+                E  D PM+ VL++GDE Y REHV+M+IQDIIP+TDN +
Sbjct:   17 RSPTVALAPGSKVGKAKVQLQKSL-SLAQPKEEAQKAATDGAKAKPKQRRVTESEDCPMYKVLLLGDEGYEREHVIMAIQDIIPETDNKK 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIM3_ECTSI1.950e-4673.79ClpS domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C8I8_9STRA3.320e-1547.78ClpS domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2734636..2735742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue1.2e-37
Seed eggNOG ortholog2880.D8LIM3
EggNOG free text desc.ATP-dependent Clp protease adaptor protein ClpS
EggNOG OGs2CHM4@1,2SC6E@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
Ec32 orthologEc-11_004380.1
Exons2
Model size644
Cds size642
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817250.0259926-CDS-P-fluviatile_contig8:2734637..27349941622817250.0259926-CDS-P-fluviatile_contig8:2734637..2734994Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2734638..2734994 -
1693571724.5762417-CDS-P-fluviatile_contig8:2734637..27349941693571724.5762417-CDS-P-fluviatile_contig8:2734637..2734994Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2734638..2734994 -
1622817250.0370862-CDS-P-fluviatile_contig8:2735457..27357421622817250.0370862-CDS-P-fluviatile_contig8:2735457..2735742Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2735458..2735742 -
1693571724.9657435-CDS-P-fluviatile_contig8:2735457..27357421693571724.9657435-CDS-P-fluviatile_contig8:2735457..2735742Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2735458..2735742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14568.1prot_P-fluviatile_contig8.14568.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2734638..2735742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14568.1

>prot_P-fluviatile_contig8.14568.1 ID=prot_P-fluviatile_contig8.14568.1|Name=mRNA_P-fluviatile_contig8.14568.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=214bp
SGNTAFVLKAPLPSNSPTAASARRPAAAAESIAAATPMYATTHTSVAATA
AAAPTPRTPWTCLAPGGKVGRAKVSLDRAVTSVAAPKSESQQQTKKKQVT
KTKRATETEDAPMFNVLVIGDEEYNREHVVMSIQDIIPDTDNTRVRAYRH
LWMSFAASMRVCCSRHGRFSSFRRQGSRAHHNNHARASTSRNESNERPPS
AGRKLWFEACELAG
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mRNA from alignment at P-fluviatile_contig8:2734636..2735742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14568.1 ID=mRNA_P-fluviatile_contig8.14568.1|Name=mRNA_P-fluviatile_contig8.14568.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1107bp|location=Sequence derived from alignment at P-fluviatile_contig8:2734636..2735742- (Porterinema fluviatile SAG_2381)
TCAGGGAACACCGCTTTTGTCTTGAAGGCTCCCCTGCCTTCCAACAGTCC
TACAGCGGCGTCAGCGCGACGACCTGCAGCAGCAGCAGAATCAATCGCAG
CAGCGACCCCGATGTACGCCACCACCCACACCAGCGTCGCCGCCACCGCC
GCCGCCGCGCCCACCCCCCGAACACCGTGGACGTGTCTCGCGCCCGGCGG
AAAGGTCGGGCGAGCGAAGGTATCCCTCGACAGGGCCGTGACGTCGGTCG
CCGCCCCCAAGTCGGAATCCCAGCAGCAGACGAAGGTACGTACCACCACA
CATGTGCAGCTCGAGGCATGGCTGTTTGTGCAGGAAGGTTTCATGGGGGC
GCACGCTCGCTCGAGATTTTCCCCGTGTGAACGCCGTGTGCACGACGACG
GGTTAGTGCACGTCTGCCGATGTCTTGTGAAATGACTCCCCAGATTTCCG
CGTGCGCGTTTGGTTTCTGATCATTCAGCCTGTAAGGCAGTATTTATCTG
GTTTCGTGGAGTGAGTCGCGCCTTTTGCGTGATTCTGAATCTGTTGCCGA
GGTTGAGTCAAGTTGCTTTTCTCCGTCTTTTCTCCTCTCCCGCACCAGTC
CCCCTCTCGCCCCACTCCAACCCTCCCCGTCCCTGACCCGCCCCGCCCCA
ATGCCCCTCCTCGAGCACAATCCTTCATTCGCCCGTCCCATAGATTTTCC
TCCCTCATTTTGTCGGTTCCGCCCTTGTTCGTGTCCTGGTCGCGACAGAA
AAAGCAGGTGACGAAGACGAAGCGGGCGACGGAGACGGAGGACGCGCCCA
TGTTCAACGTTCTCGTGATCGGCGACGAGGAGTACAACCGAGAGCACGTG
GTCATGTCAATCCAGGACATCATACCCGACACCGACAACACAAGGGTGCG
TGCGTACAGGCACTTGTGGATGTCCTTTGCGGCAAGCATGCGCGTTTGTT
GTTCTCGCCACGGCCGTTTTTCTTCTTTTAGGAGGCAGGGCAGCAGAGCC
CACCACAACAATCACGCACGCGCTTCCACGAGCCGGAATGAAAGCAACGA
GCGGCCACCTTCGGCTGGGAGAAAGTTGTGGTTTGAAGCTTGCGAGCTAG
CAGGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2734636..2735742-

>mRNA_P-fluviatile_contig8.14568.1 ID=mRNA_P-fluviatile_contig8.14568.1|Name=mRNA_P-fluviatile_contig8.14568.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1284bp|location=Sequence derived from alignment at P-fluviatile_contig8:2734636..2735742- (Porterinema fluviatile SAG_2381)
TCAGGGAACACCGCTTTTGTCTTGAAGGCTCCCCTGCCTTCCAACAGTCC
TACAGCGGCGTCAGCGCGACGACCTGCAGCAGCAGCAGAATCAATCGCAG
CAGCGACCCCGATGTACGCCACCACCCACACCAGCGTCGCCGCCACCGCC
GCCGCCGCGCCCACCCCCCGAACACCGTGGACGTGTCTCGCGCCCGGCGG
AAAGGTCGGGCGAGCGAAGGTATCCCTCGACAGGGCCGTGACGTCGGTCG
CCGCCCCCAAGTCGGAATCCCAGCAGCAGACGAAGTCAGGGAACACCGCT
TTTGTCTTGAAGGCTCCCCTGCCTTCCAACAGTCCTACAGCGGCGTCAGC
GCGACGACCTGCAGCAGCAGCAGAATCAATCGCAGCAGCGACCCCGATGT
ACGCCACCACCCACACCAGCGTCGCCGCCACCGCCGCCGCCGCGCCCACC
CCCCGAACACCGTGGACGTGTCTCGCGCCCGGCGGAAAGGTCGGGCGAGC
GAAGGTATCCCTCGACAGGGCCGTGACGTCGGTCGCCGCCCCCAAGTCGG
AATCCCAGCAGCAGACGAAGAAAAAGCAGGTGACGAAGACGAAGCGGGCG
ACGGAGACGGAGGACGCGCCCATGTTCAACGTTCTCGTGATCGGCGACGA
GGAGTACAACCGAGAGCACGTGGTCATGTCAATCCAGGACATCATACCCG
ACACCGACAACACAAGGGTGCGTGCGTACAGGCACTTGTGGATGTCCTTT
GCGGCAAGCATGCGCGTTTGTTGTTCTCGCCACGGCCGTTTTTCTTCTTT
TAGGAGGCAGGGCAGCAGAGCCCACCACAACAATCACGCACGCGCTTCCA
CGAGCCGGAATGAAAGCAACGAGCGGCCACCTTCGGCTGGGAGAAAGTTG
TGGTTTGAAGCTTGCGAGCTAGCAGGGAAAAAGCAGGTGACGAAGACGAA
GCGGGCGACGGAGACGGAGGACGCGCCCATGTTCAACGTTCTCGTGATCG
GCGACGAGGAGTACAACCGAGAGCACGTGGTCATGTCAATCCAGGACATC
ATACCCGACACCGACAACACAAGGGTGCGTGCGTACAGGCACTTGTGGAT
GTCCTTTGCGGCAAGCATGCGCGTTTGTTGTTCTCGCCACGGCCGTTTTT
CTTCTTTTAGGAGGCAGGGCAGCAGAGCCCACCACAACAATCACGCACGC
GCTTCCACGAGCCGGAATGAAAGCAACGAGCGGCCACCTTCGGCTGGGAG
AAAGTTGTGGTTTGAAGCTTGCGAGCTAGCAGGG
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