mRNA_P-fluviatile_contig8.14565.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14565.1
Unique NamemRNA_P-fluviatile_contig8.14565.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2724351..2727485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14565.1prot_P-fluviatile_contig8.14565.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2724363..2727421 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.759999-UTR-P-fluviatile_contig8:2724350..27243621622817216.759999-UTR-P-fluviatile_contig8:2724350..2724362Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2724351..2724362 -
1693571540.982026-UTR-P-fluviatile_contig8:2724350..27243621693571540.982026-UTR-P-fluviatile_contig8:2724350..2724362Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2724351..2724362 -
1622817216.7912998-UTR-P-fluviatile_contig8:2727421..27274851622817216.7912998-UTR-P-fluviatile_contig8:2727421..2727485Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2727422..2727485 -
1693571542.0036938-UTR-P-fluviatile_contig8:2727421..27274851693571542.0036938-UTR-P-fluviatile_contig8:2727421..2727485Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2727422..2727485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.7713273-CDS-P-fluviatile_contig8:2724362..27243871622817216.7713273-CDS-P-fluviatile_contig8:2724362..2724387Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2724363..2724387 -
1693571541.8576276-CDS-P-fluviatile_contig8:2724362..27243871693571541.8576276-CDS-P-fluviatile_contig8:2724362..2724387Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2724363..2724387 -
1622817216.7808654-CDS-P-fluviatile_contig8:2727200..27274211622817216.7808654-CDS-P-fluviatile_contig8:2727200..2727421Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2727201..2727421 -
1693571541.9843903-CDS-P-fluviatile_contig8:2727200..27274211693571541.9843903-CDS-P-fluviatile_contig8:2727200..2727421Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2727201..2727421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14565.1

>prot_P-fluviatile_contig8.14565.1 ID=prot_P-fluviatile_contig8.14565.1|Name=mRNA_P-fluviatile_contig8.14565.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=82bp
MSEHGMSVHSHAPWCNRDECEKNLYYAAVFLDAGSRESSRTQQARLSVER
LGRGFAAAEAAASKRPLACWAQRRVMPQDPG*
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mRNA from alignment at P-fluviatile_contig8:2724351..2727485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14565.1 ID=mRNA_P-fluviatile_contig8.14565.1|Name=mRNA_P-fluviatile_contig8.14565.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3135bp|location=Sequence derived from alignment at P-fluviatile_contig8:2724351..2727485- (Porterinema fluviatile SAG_2381)
CCCCACCACACAAGCCAGCAATCGTTCTTCACCTTGCCAGCAACACCCTG
GTACACAAGACAGAATGTCCGAACATGGTATGTCTGTCCACAGTCACGCT
CCATGGTGCAACCGTGACGAGTGTGAGAAAAATCTCTACTACGCGGCGGT
ATTCCTCGACGCAGGAAGTCGGGAATCTTCAAGGACACAGCAAGCCAGAC
TAAGCGTTGAACGTCTTGGGCGAGGTTTTGCAGCCGCGGAGGCTGCAGCA
AGCAAGCGTCCTTTAGCGTGTTGGGCGCAAAGAAGGTGAGTTCCTGTGAG
GGGCACAAGACGGAAGGTGGGGCGGACATTCAACCCTGCTGCCCGTCTTG
TGCTCCTCAGTGACGGAAATGTCATATCCTCACGCATAGCCATTGTCTCC
GAAGTTACAAGTTGTTGCTAATTGCAGCCTTCCTTGCCGGAGTTCTAGTC
CAAGACGTTTGCCATTCCGTCCAACCTGTGCTTGCAGAACGGGCCCACAG
GTGAGAAAAAATCCGCTCAGACAGGGCGGCTCTACTTCCGGCGAAATGAG
AGAAAAGGGCTTCGAAACTCAGCTCGAATATTGGCCACAACGCAACAAAA
CACCCCAACGAAGAACAAGAGGGTCCACTACCCCGCACTGTAAAAATACG
AGGTAGCTGAGAGAGTGCCGGGAATGAAAAACGCCCGCCCTTTTCCTCTC
CCTAGCCTCCCCCCACCTCCATGATAGTCCATTTTGAGTCCAGGGGGGGG
GTGCATGTGTAGAAAAAGTATAAAAAGAAAATCAAATAAGAAAGCCAGCA
CGATCCGGCAGCAAAGACAAAGGAGAAACTCTATTTCAGAAAAAGACGGC
CCAGGCTCGTTCTTCGGGCCAAAATAAGAAATTGAGCCTCGACCCGAGTT
TGACGTTTCTGAGCTGCGGGCCCGTAATGTATCGCAGCCTCGCATTAGCA
ATGCTATTTGCACCCAGAAGTTTCTTTTAGCCGAACCTCTTCCTATTATT
CCTAACCACACCGCCCGTCATTTCTGCCTCGTGGAATTCAGCCTCCCTCG
TGCCTACCACACAAAAGTACGCTTGCTTGTTGCAACCTTCCTGGTCATAA
ATGTGCTCAAGATAGTCTTCAACCCGTCGGTCTTGTTTTAAGATGCACAA
TATACCCACTGAATTATCGCTCAGCGGCTGACTAGTAGCTCGGCCGACTG
ATTGCTAAGCGGGTGTGTTTGCATCTAAACAAAGTACAACCAGAGCGCGA
TTCCCTCCATGGTCCATCTTGGCGCCTTTTCCCGGAACAATCTCTGGGGA
TAAATGCACTCCCTGTGAGCCGTCTGAACTACTGGGATACATCGCCCAGT
CGTCAAGATGAACGCGCCAATCCCCGCCTGTACGCGGATGAACCGCATTG
GGCGGTGCTGATTCCAGGGGTTCTAACCCGGTGGTGCCTTTATTGAGTTG
CACAGCACATTATATCCACTGAGCTAAGATGCGCAGCTATCTCAGTGGAT
AAAGTGTGCCGCACATCCTAACCAAAGCTCAACCCCTGACTGAGTGTCAG
AGGATGCTTCGCGTATTATCATCTTATTCCCTGGCAGAACTCATTCTTTT
TGTGCCCCCCGCATTAGAGCCGAGTAGCCTTTCGTAGTCCGCTTGACCCC
ACGTTTTCTCAATGTTCTTGACACGAGGTGGGTATGGGTAAGGCTAAGAT
GACTACGAAAGGCAACGAGCTTTACCCTCGTGTGGAGAGGAAAACGAAAG
AGGAATATTGCAACGGAAATGGCTTGAGAAGAGTATGCGAGCGCGGGGGC
AGCACCAAGCGAGCGTGTTGTGTTGTGGGCGAGAGGAGCGCAATTCTGCG
AGGGGCACAGGTGACGGTCGGGATGGTGGAAATCAAGAAAGAGATATGGC
ACAGGGGCTGCAACTCTTCAGCACCCTTCCACTGGCTTGCTTACTGACCA
CAGCGAAGGCGGAGCTCTCTGAAGCACGAGATGTGCAGGAAGAACATCGC
GAAGAAAACGTAGATGTCTGCATCATGACGTCGGCTATCCGCACCAGTTA
CGCCGCGTTTTTTGTATCGGCTTGTCTTCGTGTCGTCAACAAAGAAATGT
CGAAATTCTGTCTTGTTTTTTTCTTCCGTCTCAAAAAAGAACGATTGCAC
CGCAGAGACGCCCTTTTGCTGCGCTCCCCCCCGTCCGGTATTGACCGCGT
GAGAGTAGCGTTGCTGCAATCGTCTCCGGTACTGCTCAGATGGTGCTCTA
AGCCACTGCAATGCTGGTACCATCCTTACTAGCACGCTGGGGGAGATTTT
TTTCGGAAAGACACCATCAGGTTTGTGGCCTAAAATACGAGGACAAGCAC
AGCAGTATCACGCGCGACCGGATCAGCAGCGAGCCCATACAAGGCTTGGA
GAGATGGAGAGAGGGACGAGCTTACCCGCTAATGTTAAATGCTGTCAATG
CGCGGATGGTGGTGGTCATCATCTGCGCATCCTACACTCTAGGCCGGCAT
AAGTAGGCAGTGCTGCTGTTAAGGAAAAGAACCCATCGTCAGCGAGGTCC
GACCTTCTGCAGCAAGATCCCCCGCCGCCTCCGCCCCTGAGCGGGCGCGT
GAAAACACAACCTTCGAACGCCCGACACCGCCACAGCACACGGGTGTATT
TCGAAAGTATCAGACTGAAATGAAATACCGGCTCGCTCAATACCAATTTT
CAAGGTATGTCTATAACGCACAAAGAGCGAGCGGGAAGGGACGATGCACA
CATCCGAGTTTTGACGGCAGTAGACTGGTGGAGATCGCAAAAGATGATTT
TGCGACGACATCTACTACGTACACTTGTCATAAAATGCAGGACGACGCTC
CCATACCGCTGAGATGACACGCGCCCTATACGAGACCAATGATCAGGGCG
TGTGCAGCCATTGACTGTCGGCAAATGTTCGGACCATCCAAGAATCTCTC
ATTCTGTCTACACCCTGCCCTCCCCCCATCTCTTTTTGTGCTGACGAGCA
TGCGTGCAGCTTTCTTTGTCTCCTTCCTTCCTCTGTCTGACAAACGATCA
CCTGCTGCTCATCCTTGCCCTTCCTCGACTTTCGCCGTCAACCTCCAGAG
TGATGCCACAAGACCCCGGTTGACTTTTGGAGGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2724351..2727485-

>mRNA_P-fluviatile_contig8.14565.1 ID=mRNA_P-fluviatile_contig8.14565.1|Name=mRNA_P-fluviatile_contig8.14565.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=492bp|location=Sequence derived from alignment at P-fluviatile_contig8:2724351..2727485- (Porterinema fluviatile SAG_2381)
ATGTCCGAACATGGTATGTCTGTCCACAGTCACGCTCCATGGTGCAACCG
TGACGAGTGTGAGAAAAATCTCTACTACGCGGCGGTATTCCTCGACGCAG
GAAGTCGGGAATCTTCAAGGACACAGCAAGCCAGACTAAGCGTTGAACGT
CTTGGGCGAGGTTTTGCAGCCGCGGAGGCTGCAGCAAGCAAGCGTCCTTT
AGCGTGTTGGGCGCAAAGAAGATGTCCGAACATGGTATGTCTGTCCACAG
TCACGCTCCATGGTGCAACCGTGACGAGTGTGAGAAAAATCTCTACTACG
CGGCGGTATTCCTCGACGCAGGAAGTCGGGAATCTTCAAGGACACAGCAA
GCCAGACTAAGCGTTGAACGTCTTGGGCGAGGTTTTGCAGCCGCGGAGGC
TGCAGCAAGCAAGCGTCCTTTAGCGTGTTGGGCGCAAAGAAGAGTGATGC
CACAAGACCCCGGTTGAAGTGATGCCACAAGACCCCGGTTGA
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