mRNA_P-fluviatile_contig8.14561.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14561.1
Unique NamemRNA_P-fluviatile_contig8.14561.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2667084..2667852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size769
Cds size507
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.691234-CDS-P-fluviatile_contig8:2667083..26675901622817218.691234-CDS-P-fluviatile_contig8:2667083..2667590Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2667084..2667590 +
1693571544.0238285-CDS-P-fluviatile_contig8:2667083..26675901693571544.0238285-CDS-P-fluviatile_contig8:2667083..2667590Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2667084..2667590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.7017813-UTR-P-fluviatile_contig8:2667590..26678521622817218.7017813-UTR-P-fluviatile_contig8:2667590..2667852Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2667591..2667852 +
1693571544.0333123-UTR-P-fluviatile_contig8:2667590..26678521693571544.0333123-UTR-P-fluviatile_contig8:2667590..2667852Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2667591..2667852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14561.1prot_P-fluviatile_contig8.14561.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2667084..2667590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14561.1

>prot_P-fluviatile_contig8.14561.1 ID=prot_P-fluviatile_contig8.14561.1|Name=mRNA_P-fluviatile_contig8.14561.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=169bp
DPFTQLAAPKQNVDSQRTTQPVAFKKYLVARLPENFDSRKQRLLPVKIVH
YQHQQSTEQLQTNKLTSTSDHGKCTWPVYRSSTSLQRPLHRSPTDRAHGY
CNLLTPVKTGANTPRDVQRRRPKQGAAEDARPVSGKFTEFSGRCLTSIIK
APPGAVDGKRPGIPLTRA*
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mRNA from alignment at P-fluviatile_contig8:2667084..2667852+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14561.1 ID=mRNA_P-fluviatile_contig8.14561.1|Name=mRNA_P-fluviatile_contig8.14561.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=769bp|location=Sequence derived from alignment at P-fluviatile_contig8:2667084..2667852+ (Porterinema fluviatile SAG_2381)
GACCCCTTCACCCAACTTGCGGCACCAAAACAAAACGTCGATTCCCAACG
CACGACCCAACCCGTCGCTTTTAAGAAATACCTGGTGGCACGGCTGCCCG
AAAATTTTGATTCACGGAAGCAGAGGTTACTGCCTGTAAAAATAGTACAT
TATCAACACCAGCAAAGTACAGAGCAACTTCAGACAAATAAGTTAACCTC
AACCTCCGATCACGGAAAGTGCACCTGGCCTGTCTACAGGTCTTCCACCT
CTTTGCAGCGGCCGCTGCACAGGTCACCCACCGACAGAGCTCACGGATAT
TGCAACCTGCTCACTCCCGTAAAAACCGGGGCCAACACCCCACGAGACGT
TCAAAGAAGAAGGCCGAAACAAGGCGCCGCGGAGGACGCTCGCCCTGTAT
CCGGGAAATTCACCGAGTTCTCGGGGCGATGTCTTACGAGTATAATCAAG
GCTCCCCCCGGGGCGGTTGACGGAAAACGCCCGGGCATACCTTTGACCCG
CGCATAGCGCCATCATGTTGCAAGCTACCGCCATGTCGACACCCCTAGTA
CAAAGACCGCTGTTGCAGCGGAGCACATGGACAAGGCTTAGGCTTCCGTC
AGCCCCATGCAGATGTCGAGCCTCAAGATGCGTTCCGCTCGTAGAACAGG
CGTTACCCAGGAAAAATTCCGAAACAGAGTGCCCCGAGGCGTTGGCTACG
TGCTCGGGGCGTTTTCTGAAACGCCACAAACATACACGACACCCCGGAGC
CTTCGCTTCGTGTTTTGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2667084..2667852+

>mRNA_P-fluviatile_contig8.14561.1 ID=mRNA_P-fluviatile_contig8.14561.1|Name=mRNA_P-fluviatile_contig8.14561.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1014bp|location=Sequence derived from alignment at P-fluviatile_contig8:2667084..2667852+ (Porterinema fluviatile SAG_2381)
GACCCCTTCACCCAACTTGCGGCACCAAAACAAAACGTCGATTCCCAACG
CACGACCCAACCCGTCGCTTTTAAGAAATACCTGGTGGCACGGCTGCCCG
AAAATTTTGATTCACGGAAGCAGAGGTTACTGCCTGTAAAAATAGTACAT
TATCAACACCAGCAAAGTACAGAGCAACTTCAGACAAATAAGTTAACCTC
AACCTCCGATCACGGAAAGTGCACCTGGCCTGTCTACAGGTCTTCCACCT
CTTTGCAGCGGCCGCTGCACAGGTCACCCACCGACAGAGCTCACGGATAT
TGCAACCTGCTCACTCCCGTAAAAACCGGGGCCAACACCCCACGAGACGT
TCAAAGAAGAAGGCCGAAACAAGGCGCCGCGGAGGACGCTCGCCCTGTAT
CCGGGAAATTCACCGAGTTCTCGGGGCGATGTCTTACGAGTATAATCAAG
GCTCCCCCCGGGGCGGTTGACGGAAAACGCCCGGGCATACCTTTGACCCG
CGCATAGGACCCCTTCACCCAACTTGCGGCACCAAAACAAAACGTCGATT
CCCAACGCACGACCCAACCCGTCGCTTTTAAGAAATACCTGGTGGCACGG
CTGCCCGAAAATTTTGATTCACGGAAGCAGAGGTTACTGCCTGTAAAAAT
AGTACATTATCAACACCAGCAAAGTACAGAGCAACTTCAGACAAATAAGT
TAACCTCAACCTCCGATCACGGAAAGTGCACCTGGCCTGTCTACAGGTCT
TCCACCTCTTTGCAGCGGCCGCTGCACAGGTCACCCACCGACAGAGCTCA
CGGATATTGCAACCTGCTCACTCCCGTAAAAACCGGGGCCAACACCCCAC
GAGACGTTCAAAGAAGAAGGCCGAAACAAGGCGCCGCGGAGGACGCTCGC
CCTGTATCCGGGAAATTCACCGAGTTCTCGGGGCGATGTCTTACGAGTAT
AATCAAGGCTCCCCCCGGGGCGGTTGACGGAAAACGCCCGGGCATACCTT
TGACCCGCGCATAG
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