mRNA_P-fluviatile_contig8.14558.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14558.1
Unique NamemRNA_P-fluviatile_contig8.14558.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14558.1 vs. uniprot
Match: D8LIN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIN1_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.750e-51
Identity = 91/107 (85.05%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:    1 MSDSKIIDRKVTLLQRPKDADSQGDVSFEECLKLAQEMKEFSRLPVSCRQYIDKKAILHAACEGMTGDQVAQVSVARNSKVGRNMTHAQLQRRWTARENPLRKNSRK 321
            M+DSK+IDRKVT+LQRPKDADS  DVSFEEC+KLA+E+KE SRLPVSCRQY+DKKA+LH ACEGMTGDQ+A+VSVARNSK+GRNMTHAQLQRR TARENPLRKNSRK
Sbjct:    1 MADSKVIDRKVTILQRPKDADSASDVSFEECVKLAKELKEVSRLPVSCRQYLDKKAVLHQACEGMTGDQLAEVSVARNSKIGRNMTHAQLQRRLTARENPLRKNSRK 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIN1_ECTSI1.750e-5185.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2638241..2644039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004500.1
Exons3
Model size2132
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14558.1prot_P-fluviatile_contig8.14558.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2640049..2644039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817249.3892624-UTR-P-fluviatile_contig8:2638240..26400481622817249.3892624-UTR-P-fluviatile_contig8:2638240..2640048Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2638241..2640048 -
1693571706.4897878-UTR-P-fluviatile_contig8:2638240..26400481693571706.4897878-UTR-P-fluviatile_contig8:2638240..2640048Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2638241..2640048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817249.4022014-CDS-P-fluviatile_contig8:2640048..26401651622817249.4022014-CDS-P-fluviatile_contig8:2640048..2640165Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2640049..2640165 -
1693571706.8572156-CDS-P-fluviatile_contig8:2640048..26401651693571706.8572156-CDS-P-fluviatile_contig8:2640048..2640165Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2640049..2640165 -
1622817249.4146156-CDS-P-fluviatile_contig8:2641183..26413321622817249.4146156-CDS-P-fluviatile_contig8:2641183..2641332Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2641184..2641332 -
1693571706.8676612-CDS-P-fluviatile_contig8:2641183..26413321693571706.8676612-CDS-P-fluviatile_contig8:2641183..2641332Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2641184..2641332 -
1622817249.4259784-CDS-P-fluviatile_contig8:2643981..26440391622817249.4259784-CDS-P-fluviatile_contig8:2643981..2644039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2643982..2644039 -
1693571706.8778503-CDS-P-fluviatile_contig8:2643981..26440391693571706.8778503-CDS-P-fluviatile_contig8:2643981..2644039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2643982..2644039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14558.1

>prot_P-fluviatile_contig8.14558.1 ID=prot_P-fluviatile_contig8.14558.1|Name=mRNA_P-fluviatile_contig8.14558.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
MSDSKIIDRKVTLLQRPKDADSQGDVSFEECLKLAQEMKEFSRLPVSCRQ
YIDKKAILHAACEGMTGDQVAQVSVARNSKVGRNMTHAQLQRRWTARENP
LRKNSRK*
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mRNA from alignment at P-fluviatile_contig8:2638241..2644039-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14558.1 ID=mRNA_P-fluviatile_contig8.14558.1|Name=mRNA_P-fluviatile_contig8.14558.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5799bp|location=Sequence derived from alignment at P-fluviatile_contig8:2638241..2644039- (Porterinema fluviatile SAG_2381)
ATGTCGGACTCGAAGATTATCGACCGCAAGGTGACGCTCCTGCAGCGACC
GAAAGACGGTGAGTGCGTGCAGAAAGCATCCGTTCGATGGATCGCGAGCC
AGAAAGAGAGATAAGGGCAGATGGCTTCTCGAGGGGGGGGGCGCAGCCCA
AAATACCGTTTTGCCTTGAAGTGTGTCAAGCACCTTACAAGGCATGCATC
CAGCGGTGAATGCCTCAGGTGCATCCGGGCACGCGCTGGCTAAGGTCTGT
CCTTCAGGGTCGACTTCTCGTGAGCGTTATTCGCGTTTGAGGGGCTCGGG
GCAACATTCCTCTCCGTAGCAAACAAATGCCTGTGTACATCGTTCGGCGG
TAAGGAGTACCTGGCACTTTTACCCAGATCGCTCGCTTGCGCATTTGTCG
AGAGCTCTGCCGAGCTTTAGGGAAGACAGCATGTGCTTATTTGATCCCTC
CCTTTCGCGCACTATAGTTTTCAGTTGTCGAAAACCTTCCGTGCGTGCGC
GTCTGAGTTGTGCGATTTTTGCGCGATCTCGAAATGGACATGCCCGTCTT
GGAGGAAGCGGAGACTCATGTTGCTCCCTGCAGCACTCCCGTACTCACGC
CCCCCAGACCGGTGTAGAGAGGGACCGGCGCACCACCTCTTTGGTGTCTG
GTGGTGTTTGGTGTTCTTTTATCCGTGTGTGTACGGCCCCTTGTTTTTGA
CACATGGGGGCAAAAATCCATCAATCGCGCCACATTGGGGAGGGGGCTGA
CTTCCGAAAATTGATATGCTTCTACACAAGCCGTAGATCCCTTCAGCTTG
TTTGCCTTGCCTTGATACTGTGGCGGGCGCGTGACATGTTGGCTCTCACC
CTCGCGTAGGTCAGGATGCCAACAGCCGAGGGTAGTAGAGAGAGGAGGGC
GAGCTCGAGTAACAACGCTGTTGCGGCGGCTGCTTCCGTGTGTGTGATTG
TCGTGCTCCAACTGCTGTGGGTGTGTGTGTTCCGTAAGATTTCAGATTGA
ACTTTCGCGTGTCATCGCGAGCACCCAGGAGTCTGCCCGTCCTCGCCCCG
CTCGCTCCAAGTCTCTGTAGGCGAGCAGCAGTTCCCTCTCTCACCCTCGC
CCTGGAGGTGTCCGCTTTCAACTCCGTGCTGCTGCTTCTGACGTGCGCTG
CTCACATCCAGATTAAAACCCTCCCCCTTTTTTTTTGATGCTTGGGTCCA
AAATCGATGCCCCCATCTGCTCCTGCAGGCACAGCCCCTCACGCAAGGGG
GTGTTGTGTGGGGATCGTCGAACAGGCGACCTCCCTTCACAGGCCGCGCT
TAATATTTCGCTTTATTTTCGAAAAACTTGGCGCGTGCTTCCACACACAC
AGCTGTGGCTGGTGTTGCTTCATTCATGTAGCAAGTCGCAAAATTAGAGG
GGCAGGGCACACAACTCCTTGTCCGAAGTTAATAGAGCCAGTTGTTTGCG
GAACTTCTCGAAAGCCAAGTGCAGCGCGCGTTTCCGGGCTTGGGTGCACC
CGATCCCCCCCTCGGTGACAAACATATTTCCATCGTCTACGTTGGAGAGA
TTTTTATTTTATATCCTGAAGGGCTGGCTGCATCTTGAACACCAAAATGG
CACACCTGACCTTAGAACCGCTCAGCAGTAACCCCCCCCCCCCTGCTCGA
TGGGATTGAGGCGTTTACAATCCGGCGACAGCGTGATGATTTTTGTGTGT
CCCACCCTGCCCCTTCGAAAGCGCACGATCAACCAAGTAGGTTCTCTCCC
CTCCCGTCATAAAGCGCACCGATCAAGACACGCGTCGCCGAAAAATGATG
CTGGTCGCCCTCGTGTGTGAAAGTTTGTTATTGATCCGCGGAGTAGTAAT
CCCACCTTGTTCGCCCAATGACGAAAGGGGGGAAAGGTCATTTGGATCCT
GAAGCTTTAAAAACCGTTGTCTACAATGCGCGTTCGTGTTGTAGTGTCCA
TGCCTGGTCCTCTTCTGCTCATGCTCGAGACGGAAATCGCGACGAGTCCG
TGAGCGCCACGGATGGATAGATTTTTTCGATATTTTCGTCCCGAAGCGGA
TCGGGATTTCCCTTTGCCTGGAACAGTTTCGGCACTGCGCGGCAGCAGCG
CACGCGGCAAGCACTTCAAGGACGCGCACTCGAGAGACAAGTGCCGATAT
ATGGCTCGGCTTCCTCAGCCCAATAGTGGCCAGCAACGGAGTGTTGCATC
ACAACCAAAGAAGTACGGCTTCAGGCGCGATCTTCGTCACTGGCTTTCCC
AGGCGGCTGGGATGCGGTCGACCCAGAACCCCCCCTCCCACTCCGTGCTA
TTTCGGGGGCTTGTGATCTTCACAAACCAGTGCCGAAGCTGCAGCCCAAC
AAGTCAGCGGCACAAGCCCTGTTCAGTACTTTTCCCGGATACGCCCAACT
TTGTTTCTCCCTCGTCCCCTCCCGCAGCCGCTGCCGTCGACTTTCACGCG
CGCGCGCACACACGAACACGCTACATATGCGCACAAAGGGCAGCATACAG
AAACACTGCAACACTAATTCGAAAATGCCTCCCCGACCCCCTTGCGTCGA
CCGTCCCGCTCGCCCTCCCCCCGTGCTTTCTTCTCTCCGCCCAACCGTCT
GTCGTTGGGATGGGTGTGGCGATGATGCGAACAAAATATCCATCGGTGGA
CGGTCATCACGGAATCACACGGACTGGCTCCATTCATGCTCAACCCGTGC
GATGCAGCCGACAGCCAGGGCGACGTGTCGTTCGAGGAGTGCTTGAAGCT
GGCCCAGGAGATGAAGGAGTTCTCTAGGCTCCCCGTGTCGTGCCGCCAGT
ACATCGACAAGAAGGCCATCCTGCACGCGGCGTGCGAGGGGATGACGGGG
GACCAGGTCAGTCAAACTAACTGCGAGACGGGGGCAGTCACTGCTGTTGT
TTCTCAGGGCTGTGCTACGCGGGGTGAGGCGGGGATCTCATGGAAACCGG
GAAAGCGTTTCCCGCGCGGGGGGGGAGGGGGAGGAAAGTATATTTTGCTG
CCTTAAGTCATCCGAACGTTGGCTATGCATCCCTTACGAGACGGAGCTGA
GAGGGGGGGGGGGCGTACTCTCATGTTTTGCATGCCTTAGCGGTTAGACC
TATGACCACGCGTCTTCGAGAGGACGGAGCATTGAGTGGAGGAGGGGGGG
GGGGCTATTAGATTCGACCGATCGTGGCCAAGTGAGGCTATCCTGCTGCA
GAGCTGACCGTGTCATTCCAAACCAAGTTGCACCGAGGTTGGTTGCGCGC
GTACGACGGGCGTTTTTTTTGTCTCATCAGTGGAAAGGGGATGGGATTCA
TTTATGGGCTTTCGGCCGACCCTACGTCTCCCGCTAAGGAGAGCAGCGAA
CCCAGGGGTACTCTAGGTAGTCTGTGAGAAGGTGTGCCGCCGCAAGAAGT
GGTTGATGTCCAAGCCTTCGCACACCATGTCGAGAAACCCGTTGCCGCTT
GGACGTGCTGAAAGTTCAGAGCTCAGTTTGGTCCAAAGTTGTCGGGCATA
TCTCTTGATTTGACGCCTTTAAGGTCGCCAGGAGATTACAGGCCACGAGG
ACAATGAAGCAAGCTGCGTTGTGAAAGGTACCAAGTCGAGGTTTTTCGGT
TTCGACCCAAAACACACGTTTCGGAATCCCGCGGGAGTTGATGGGATCCT
CGTGGCCGCAGTAAACGCAGTACTCATCAAGTTTTCCTTGAAATTTTGGT
CACATGACTTTTGCATGATGTTGTGTACTGGTATTCTTGTTTCTTTATTT
GCTTGTTGCCGTCTCCTTCCCCTCGTCCCTTCCTCGTGCTCTCGTTTCTC
GTTTCCCGTGTGTCTGTCGTTGCTAATCTTTTGTCTTTGCCTCAATCTCC
TTTCACCTGTTCTCTCCCCCGCAGGTTGCGCAAGTTTCGGTGGCCCGCAA
CAGCAAGGTCGGACGCAACATGACCCACGCCCAGCTACAGAGGCGATGGA
CCGCGCGCGAGAACCCCCTCCGCAAGAACAGCCGGAAGTGAGGAAGCCGT
GATTGCATTGACTCGAAACCGGGCCGAACCGAAACCTGAATCAGAACCCA
GCCAACAGGAGCGAGGACAAGAAACGATAATAATAAAAAAAGGGTTATTG
TTTTTTTCTTTTTTACCGTGCGGGGAACGAGCAACAGCAGAGGAGCGGGA
ACAAGGGTTGGGTAGGTTAGGGTAAGATAGAGAGGACGGGGCGTGTGGCG
GGGGGGGGGGAAAGGGGCTTTAAGAGAAGACGGAGGAATTTGGGAAGGAA
ACCCCTCCTCACGCGTCAGCGACAGCCGACGACGGTGACACAGAGGAAAG
TGGGGGAAATGTGATGCCACGATTGGCAGTGAGCTCGCGAGACACTGGAT
GGAGGCGAAAAGCGTCCAGGGTGAGAATACACTAGAACCGTTGCACGTTT
TGCTGGGGGGTTTCGGGGGGACGGGGGGAGGGGGTAGTTGATAGGTGTGC
ATCATACGGCCAAGTTCGCATGAATCGACATGGGCAAGCTTGTGTAGATC
CCGGCCGTTCGCCTCGTGTTTAGGTTCGTCTCGCGTCGCAGCGTTCGGCC
TATAGCGGGATGGAAGTGGTTCGATCTGTATTCAGTGAGGGAGCAAGGAG
GGAGAGAAGCCGGGTTCTTGGGCCTCTGCCGTGCTCCTTTCGCACACACT
CGCGCGAGGCTGTAGCTCCATAGCGGTGTGCAGGGAGAGACACATCCGGA
TCGGGATCAGCTTGTCTGTTGCGTGTCGGACGAATGCTGCTGCCGCTGCT
GACATGGATGTGCCCATCTTCCCGTTCATTTCGGCTTTCTGTGCAGTAGT
CTGTTCTTCACATCGGTCGGCTGTCTGCCTCCCGCGGGTGTCCGTTTCGC
CTCTTGCTTGCCACGAAGGTATAGTGCGACCCTTTCCTGATTTTTTTTGC
CCCGGTCTGCTGTGTTCTGCTTTACCGGTGTCATCTTCGGCGGGCGGTAG
GCACCAAGGATGGGTGTTTGTTCATGTGCCTGCTCGGGCTCGTAAAGAGG
CAGGGAACCAACTCGTGGCTTTGGGGTCGAGGCGAGGCAGGGGAGGCTTG
GAAACGAGTTTTATTTTAGCTGACGCACGGGTAGATGATGTCCTGCCTTC
TTTCAGCTTCTGCTGGAGGTTTAAGTGGAGTAATTTGTGTGCCCATGTAT
ACAAGTGAAATTATGTAAGGTTCGACCATTCAATCGACGAAATGATCGCA
CCGAAGGTCTACCCACGCCAGCAAGCGGCCCCGGTGTTGTTGTCGTGCAC
GGGCCCTTTCCGAGGACCCTTTGCCGCACAAGAGGAAGGGGTGTGGCGGT
GGTGGACACGCTGCTGGTCAGCTAGGATGTCGCGCGTGAGGTTTGTCTTT
CGGGAGCTTGGTGCTTGTTTCCCCCCCCCGATTTTTAATTGGTCCACTGC
CTGTCGGTGGCGGAAGGCAGGCCAGCCAGCCACTCTTCAAGAAAGGAGTG
CACGCGCGGTGGAATGGATACCATTCATTGCCCGCGGATTTAAGGTGGCG
AGCACTCCGTTCTCGTAGACACGCTTGGGGGGCAGTGTCACGGTTGAGTG
TGAGCGGTCGAGAGACAGATTTGAGTTCGACCCGGCTGCGCTCGTTCATG
GCACCGATTGCTACGCCTTTGGGACAAGAGAGGACAAGGACAGCGGTCTA
ATCAGAGCAAAGGCAAGAAGGATGGAAGGGAACATGGGACGTGATCCTCA
GCAGAAGTCGTATTGTTTGCATTGTCCCTCCCTCCGGGGCGCGCTGACAC
AAGGCAAGTCGACAAAAAGTAGACGAGACGAGGTAGCACGTGTCGTCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2638241..2644039-

>mRNA_P-fluviatile_contig8.14558.1 ID=mRNA_P-fluviatile_contig8.14558.1|Name=mRNA_P-fluviatile_contig8.14558.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig8:2638241..2644039- (Porterinema fluviatile SAG_2381)
ATGTCGGACTCGAAGATTATCGACCGCAAGGTGACGCTCCTGCAGCGACC
GAAAGACGATGTCGGACTCGAAGATTATCGACCGCAAGGTGACGCTCCTG
CAGCGACCGAAAGACGCCGACAGCCAGGGCGACGTGTCGTTCGAGGAGTG
CTTGAAGCTGGCCCAGGAGATGAAGGAGTTCTCTAGGCTCCCCGTGTCGT
GCCGCCAGTACATCGACAAGAAGGCCATCCTGCACGCGGCGTGCGAGGGG
ATGACGGGGGACCAGCCGACAGCCAGGGCGACGTGTCGTTCGAGGAGTGC
TTGAAGCTGGCCCAGGAGATGAAGGAGTTCTCTAGGCTCCCCGTGTCGTG
CCGCCAGTACATCGACAAGAAGGCCATCCTGCACGCGGCGTGCGAGGGGA
TGACGGGGGACCAGGTTGCGCAAGTTTCGGTGGCCCGCAACAGCAAGGTC
GGACGCAACATGACCCACGCCCAGCTACAGAGGCGATGGACCGCGCGCGA
GAACCCCCTCCGCAAGAACAGCCGGAAGTGAGTTGCGCAAGTTTCGGTGG
CCCGCAACAGCAAGGTCGGACGCAACATGACCCACGCCCAGCTACAGAGG
CGATGGACCGCGCGCGAGAACCCCCTCCGCAAGAACAGCCGGAAGTGA
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