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Homology
BLAST of mRNA_P-fluviatile_contig8.14557.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE) HSP 1 Score: 215 bits (548), Expect = 2.900e-60 Identity = 199/374 (53.21%), Postives = 233/374 (62.30%), Query Frame = 2
Query: 50 AAASSEEVLLLKGLQPLAAVKICLRRLGLAHTGIEGEAEVEVEGGPKLRMLVGQVVAHKRITAVLEEFQKRVTMRRKEKLAEAEGRSPPGQRQGRAARSKGKGNKASAPGGDGGKSQGRAKSSTGASSRRAQAATAGSAASAFVSLSGEFPGDEESR---KVIRNYYNKDVASAHNANADDGPKPDRRKPNATSWPPNSTATRGSLTTTTSTN--SSRASSEPGWAGADRAAGWGRGGXXXXXXXXXXXXXRGAWRRQVDDNSKNAKKSS---------LSXXXXXXXXXXXXXXXXXXXXGPRNPSGARERGSGRKNDSTXXXXGAARGGGTAGVAAETLHGSWAAKRALKEKEASATRAFSGKRITFGDEGD 1129
AA EEVLL+K LQPL+ VKICLRRLGLAHTG++GEAEVEVEGG +L+ LVG+VV HKR+ V+EE Q+RVTMRR+EKLAE+EGRS PGQ +G A +GKGNK + P + G KS RA AA A +A SAFVSLSGE P D+ RNYYNKD+A+AH A G +P+ + + +R+S+EPGWAGADRAAGWGRG XXXXXXXX G RQ D + +N + XXXXXXXXXXXXXXXXXXXX GSG + DS GGTAG E LHGSW AKRALK+KEASAT+AFSGKRITFGD+ D
Sbjct: 133 AAVHGEEVLLIKSLQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGKVVEHKRVAVVMEELQERVTMRRREKLAESEGRSLPGQGRG-ATGKQGKGNKKT-PAKIHERQGGARKSGV----ARAAAAAATTAGSAFVSLSGESPSDDHDAGPSSTSRNYYNKDIANAHANPALVGRRPNGQPSSXXXXXXXXXXXXXXXXXXXXXXXXKARSSTEPGWAGADRAAGWGRGXXXXXXXXXGGRVGGG---RQPDRSRRNEGRGGGGVRGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDREDSR---------GGTAG--GEALHGSWVAKRALKDKEASATKAFSGKRITFGDDDD 486
BLAST of mRNA_P-fluviatile_contig8.14557.1 vs. uniprot
Match: D8LIN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN2_ECTSI) HSP 1 Score: 134 bits (337), Expect = 1.680e-32 Identity = 130/361 (36.01%), Postives = 154/361 (42.66%), Query Frame = 2
Query: 50 AAASSEEVLLLKGLQPLAAVKICLRRLGLAHTGIEGEAEVEVEGGPKLRMLVGQVVAHKRITAVLEEFQKRVTMRRKEKLAEAEGRSPPGQRQGRAARSK-GKGNKASAPGGDGGKSQGRAKSSTGASSRRAQAATAGSAASAFVSLSGEFPGDEESRKVIRNYYNKDVASAHNANADDGPKPDRRKPNATSWPPNSTATRGSLTTTTSTNSSRASSEPGWAGADRAAGWGRGGXXXXXXXXXXXXXRGAWRRQVDDNSKNAKKSSLSXXXXXXXXXXXXXXXXXXXXGPRNPSGARERGSGRKNDSTXXXXGAARGGGTAGVAAETLHGSWAAKRALKEKEASATRAFSGKRITFGDEGD 1129
AA EEVLL+K LQPL+ VKICLRRLGLAHTG++GEAEVEVEGG +L+ LVGQVV H+R+ V++E Q+RVTMRR+EKLAE+EGRS PGQ G+AAR K GKGNK + DG QG A+ + A + FVSLSGE P D+ + +D SR GGTAG E LHGSWAAKRALK+KEASAT+AFSGKRITFGD+ D
Sbjct: 30 AAVHGEEVLLIKSLQPLSVVKICLRRLGLAHTGVQGEAEVEVEGGAELQRLVGQVVDHRRVAVVMDELQERVTMRRREKLAESEGRSLPGQ--GKAARRKEGKGNKKNPADIDG--RQGGARKNGAARAXXXXXXXXXX----FVSLSGESPSDDXXXXXXXXXXXXXXXXXXXXDRED---------------------------------SR-------------------------------------------------------------------------------------------------------GGTAG--GEALHGSWAAKRALKDKEASATKAFSGKRITFGDDDD 244
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1556 |
| Cds size | 936 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817249.2842908-UTR-P-fluviatile_contig8:2634251..2634336 | 1622817249.2842908-UTR-P-fluviatile_contig8:2634251..2634336 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 2634252..2634336 + |
| 1693571706.178147-UTR-P-fluviatile_contig8:2634251..2634336 | 1693571706.178147-UTR-P-fluviatile_contig8:2634251..2634336 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 2634252..2634336 + |
| 1622817249.2964094-UTR-P-fluviatile_contig8:2634834..2634945 | 1622817249.2964094-UTR-P-fluviatile_contig8:2634834..2634945 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 2634835..2634945 + |
| 1693571706.1954439-UTR-P-fluviatile_contig8:2634834..2634945 | 1693571706.1954439-UTR-P-fluviatile_contig8:2634834..2634945 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 2634835..2634945 + |
| 1622817249.3583307-UTR-P-fluviatile_contig8:2637717..2638141 | 1622817249.3583307-UTR-P-fluviatile_contig8:2637717..2638141 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 2637718..2638141 + |
| 1693571706.477371-UTR-P-fluviatile_contig8:2637717..2638141 | 1693571706.477371-UTR-P-fluviatile_contig8:2637717..2638141 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 2637718..2638141 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817249.310074-CDS-P-fluviatile_contig8:2634945..2635010 | 1622817249.310074-CDS-P-fluviatile_contig8:2634945..2635010 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 2634946..2635010 + |
| 1693571706.2059476-CDS-P-fluviatile_contig8:2634945..2635010 | 1693571706.2059476-CDS-P-fluviatile_contig8:2634945..2635010 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 2634946..2635010 + |
| 1622817249.3224568-CDS-P-fluviatile_contig8:2635541..2635674 | 1622817249.3224568-CDS-P-fluviatile_contig8:2635541..2635674 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 2635542..2635674 + |
| 1693571706.2165468-CDS-P-fluviatile_contig8:2635541..2635674 | 1693571706.2165468-CDS-P-fluviatile_contig8:2635541..2635674 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 2635542..2635674 + |
| 1622817249.3353662-CDS-P-fluviatile_contig8:2636663..2636800 | 1622817249.3353662-CDS-P-fluviatile_contig8:2636663..2636800 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 2636664..2636800 + |
| 1693571706.236211-CDS-P-fluviatile_contig8:2636663..2636800 | 1693571706.236211-CDS-P-fluviatile_contig8:2636663..2636800 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 2636664..2636800 + |
| 1622817249.3462934-CDS-P-fluviatile_contig8:2637116..2637717 | 1622817249.3462934-CDS-P-fluviatile_contig8:2637116..2637717 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 2637117..2637717 + |
| 1693571706.2486417-CDS-P-fluviatile_contig8:2637116..2637717 | 1693571706.2486417-CDS-P-fluviatile_contig8:2637116..2637717 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 2637117..2637717 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig8.14557.1 >prot_P-fluviatile_contig8.14557.1 ID=prot_P-fluviatile_contig8.14557.1|Name=mRNA_P-fluviatile_contig8.14557.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=312bp
MLVGQVVAHKRITAVLEEFQKRVTMRRKEKLAEAEGRSPPGQRQGRAARS KGKGNKASAPGGDGGKSQGRAKSSTGASSRRAQAATAGSAASAFVSLSGE FPGDEESRKVIRNYYNKDVASAHNANADDGPKPDRRKPNATSWPPNSTAT RGSLTTTTSTNSSRASSEPGWAGADRAAGWGRGGGRSKHGGRAGRAGRGA WRRQVDDNSKNAKKSSLSLQQQRQRQQLQGRAGGGTGRGPRNPSGARERG SGRKNDSTSSSSGAARGGGTAGVAAETLHGSWAAKRALKEKEASATRAFS GKRITFGDEGD* back to topmRNA from alignment at P-fluviatile_contig8:2634252..2638141+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig8.14557.1 ID=mRNA_P-fluviatile_contig8.14557.1|Name=mRNA_P-fluviatile_contig8.14557.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3890bp|location=Sequence derived from alignment at P-fluviatile_contig8:2634252..2638141+ (Porterinema fluviatile SAG_2381) GTCTGCTGAGGCTACGTCCGGTACTGGTGGCGTGGGTGCTGGTGATGGTG
CGGCCGCGTCGAGCGAGGAGGTTCTCCTGCTCAAGGTAGGAGGAGGAAGT
TAGAGCGGCATGACCCTCGGATCCTTCTTGGTAACTTCTGCTCCGATGAG
ACTAACCCTCTTCTGCCAGTCTGCCTGTCTGAAAAAGGGAAGGAGGATTA
GAGGTGGTGAAAAAAGAAACAAGATCACTGGTCACGAAACAGTGCATGAT
TTCCGGTATGTTTGCGTCTGGAACCGTCTGCATGCCGGTACAAGTCTCTA
CAGCCAAACCTGCCATCATTTTGATGTGGCATTCAACACCTGTTGAATGT
ATCACAACGAAATCGAATTGACAGCCATCAGCACCTCTAAATTTCTCCCA
TTGCGTTGAACGGAGTGGATTTGACATTCATCGACGCCACTCTATTGCGT
TAAATGGAGTGGATTTGGCATTCATCGACGCCACTCTAAGACGTGAAAAA
ACGTATTATATCTGACACAAACATGTTCACGTCGCCAACACATCGAACCG
GAATCGACGTGACGTACGTGTGCATCGTTGCAGGGCCTGCAGCCGCTAGC
GGCGGTGAAGATATGCCTCCGACGGCTGGGTCTGGCGCACACGGGCATTG
AGGGCGAGGCGGAGGTGGAGGTCGAAGGGGGCCCCAAGCTGCGGATGCTG
GTGGGGCAGGTAGTGGCGCACAAGCGCATCACGGCGGTGTTGGAGGAGTT
CCAGAAGAGGTAATTACGAGGCCGCTAAGCGCATGGGGGGTGGGTGGCGG
GGgaGGGGGCACGTAAGCCGGAAGGGGCGGGGgggaGGGGGGGGGGGGCC
AACGGGCGCGGCGTTTGTCATCACTGTTACTGCGTGTCACTTGTCTGCAG
CAGTAGATTTGGCCTCGTAGTCGGGAAGCGAGTAGAGACAGGGGTGCGAT
CGAGCAATTGGCGTCACGTGATGTGTGTAGTGGAGGATTTACATCCCACA
AGACGACGGCTGGCTAGTGGGAGTTCCAATCAGAGAAAAATCGACCGTTT
TTCCTAGCCGGCTGCAATCCTTCAAACCACAGATTTGCTAGCTTGAAAGC
ATCAGCTGATGCTTTCCCGGTCCTCCGCCACGTCAAAAAGCTTAGCCGGT
TGAACACGGCGATGCTGCTTGTACTTTACGGGTACGTTGATCGCTGCTTC
TCGTTCGTTTTTTCTTTGCGTGCGCTCCTTCTTTGGTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTTGCTTTTATTCTTCGCCAAGAGTAACGATG
AGGAGGAAGGAGAAGCTGGCCGAGGCTGAGGGCCGCTCCCCGCCGGGACA
ACGGCAGGGTCGAGCCGCGAGAAGTAAGGGAAAGGGGAACAAGGCCTCGG
CCCCGGGGGGTGACGGGGGTAAGGTGAGGTGGCGGCGTAGGGCCAGACCG
AGGCAGGGGACAGGGAAACAGGAGAAGGGGGGAAGAGAGTAGGGGGGGAG
GCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGCGAGACAG
GGAAAGGGAGGGAAAGAGAGAGGGAAAGAGTGAGAGAGAGGGAGGGAGGG
AGATAGATATACAGAGAAAGCGGGGTACGCAGATGAAGAGAGCGGGGGAA
AGTGAGAGAACAGGGGTGATGCGAGAGAGAAAGAGAGGGAGAGAGAAGAG
AGATATGCACCCACGGGACAGACATCTATCGATTGCCGAGTGCCAAGCAG
TGCTAAGGAGCGAAGGACACGGCGGCGGTATTACAGCGGTGTTTGTTGTT
TTGCGTTTGCCGTCTTGTACGCTGTTATTTTTGATGTCGGCACTGTGTTT
GCTGTACTTTGCGAGCCATTTGCTACCGCGAGTTTCTTGTTCCCGAACTC
CTCTGTTCGGTGCAGGTCATTTCGCTTTCAAATTCGACCACGCCGGACGC
GGCATCAAAAATACGTCTGGCCCTTCCTGGGGACTCGCCGCTTTGCGGCA
CGCTCTGGGGCTTTCGATCGTGGAAAATGTTCTGGAAATTGCTTTTTCAA
TCTCGGGTGGAGGGGGCGGTTCCCATGGGTTGAACCACGTGTAACCAGGC
CGAATAAATCTTGTAAGCATGACACCCCTTTTTATTGTGAGACAGGGAGC
AGCCGGCTCGAAAAAACACAAGAAACGAACGAAGGTATCGGACAAATGAT
TGTGAGCAACCGTTGACAGTCCTTCGAGCCAGCTCGATTTGTTCGCTGGA
TACCTCGCGCTCCTCTTACGCCAAGCCTCTCACACCACATCACACACCAC
TCCACTCCACACCATGCACGTGCCTTCTCCCGGGTCGGACCGCTTATTTC
CGCTCACCCAAGTCGCAGGGAAGGGCGAAGAGCAGCACGGGCGCGTCATC
GCGCCGGGCGCAAGCGGCGACCGCAGGTTCCGCGGCCTCGGCCTTCGTGT
CACTATCTGGGGAATTCCCGGGCGACGAGGAATCGCGCAAGGTCATCAGG
TATGAGCGGCAGCAGCAGCAGCAGCGGCGGCGGCGGTGGCGAGGCCACTC
TCGAACGTGAAAAGTGTTGCGGTAATAGGATGGCGTCAATATCGAGATAT
GACCCCTTTCAGGACTACGTCCCAACTCGTGGGGGCGGCGGTGTTGCACC
GCATACCGACTGTTTGTATTTTGGCTCACGTTTGCGGACGAAAGAACATT
ACTCGGGTGCTCAGATGCGCGAGTGTATTGAAGTATTTGGGCAGATCTTC
CCTATCCCCCCTCTCGCCCCTCCCCGCCCGTCGTCACCACCGACCCCCCA
TTTTCCCTTCCATAGAAACTATTACAACAAGGACGTCGCGAGCGCTCACA
ACGCCAATGCCGACGATGGCCCCAAGCCCGATCGACGCAAACCCAACGCC
ACGTCATGGCCGCCAAATTCAACAGCGACCAGAGGTAGTTTGACCACCAC
CACCTCCACCAATAGCAGCAGAGCGAGCAGCGAGCCCGGGTGGGCTGGAG
CCGACCGCGCGGCAGGGTGGGGGCGCGGCGGAGGACGGTCCAAGCACGGG
GGCAGGGCGGGCAGAGCAGGCAGAGGGGCGTGGAGGCGTCAGGTCGACGA
CAACAGCAAGAATGCTAAGAAAAGTAGTCTCAGCCTGCAGCAGCAGCGGC
AGCGGCAGCAGCTGCAAGGGAGAGCTGGCGGGGGCACAGGGAGGGGGCCG
AGGAATCCCAGCGGGGCACGAGAGCGGGGGAGTGGAAGGAAAAACGACAG
TACCAGCAGCAGCAGCGGGGCTGCTCGCGGTGGAGGCACGGCAGGAGTGG
CGGCGGAGACTTTGCACGGGTCGTGGGCGGCGAAGCGTGCGTTGAAGGAG
AAGGAGGCCTCGGCCACTCGTGCGTTCAGCGGGAAGAGAATCACCTTCGG
GGACGAAGGCGACTGACTGAATGTATTTCGGTCACACGACAACCCACCCC
GTCCATTTCGTTGTGGTACCATTGCAAGATGCGGGCGGTTTCGCGGGCGC
ACGTAGTTGGTGCTGACGTGAAATGCGCAACCCTTTTCTTTCGGCCGGAA
CATCAGTGCTTTTGAGGAGTGGGGGTGAATATGTCTGTCCGAAGGGGTGT
GCGAACCAAGTGAGCTACTTTTCACCCCCTGACATCCTCGTCCTTGGAGA
GACCGCAGGATTATTGGTAAGACGATCCCCACGCCCTTCACTCACTCTCC
CGAGGTTTCCGTACAATACGGGAGCCGGGGGGGAAAGGGAGACGAAGTGA
GCGCCTTGTCGTGGTCACGCTTCGGGTGGTGGAGCTTCCTGCGATTGGAC
GCAACGTAGGCGATCAATCCTCGATTTTCGCAAAGTTACA back to topCoding sequence (CDS) from alignment at P-fluviatile_contig8:2634252..2638141+ >mRNA_P-fluviatile_contig8.14557.1 ID=mRNA_P-fluviatile_contig8.14557.1|Name=mRNA_P-fluviatile_contig8.14557.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1872bp|location=Sequence derived from alignment at P-fluviatile_contig8:2634252..2638141+ (Porterinema fluviatile SAG_2381) ATGCTGGTGGGGCAGGTAGTGGCGCACAAGCGCATCACGGCGGTGTTGGA GGAGTTCCAGAAGAGATGCTGGTGGGGCAGGTAGTGGCGCACAAGCGCAT CACGGCGGTGTTGGAGGAGTTCCAGAAGAGAGTAACGATGAGGAGGAAGG AGAAGCTGGCCGAGGCTGAGGGCCGCTCCCCGCCGGGACAACGGCAGGGT CGAGCCGCGAGAAGTAAGGGAAAGGGGAACAAGGCCTCGGCCCCGGGGGG TGACGGGGGTAAGAGTAACGATGAGGAGGAAGGAGAAGCTGGCCGAGGCT GAGGGCCGCTCCCCGCCGGGACAACGGCAGGGTCGAGCCGCGAGAAGTAA GGGAAAGGGGAACAAGGCCTCGGCCCCGGGGGGTGACGGGGGTAAGTCGC AGGGAAGGGCGAAGAGCAGCACGGGCGCGTCATCGCGCCGGGCGCAAGCG GCGACCGCAGGTTCCGCGGCCTCGGCCTTCGTGTCACTATCTGGGGAATT CCCGGGCGACGAGGAATCGCGCAAGGTCATCAGTCGCAGGGAAGGGCGAA GAGCAGCACGGGCGCGTCATCGCGCCGGGCGCAAGCGGCGACCGCAGGTT CCGCGGCCTCGGCCTTCGTGTCACTATCTGGGGAATTCCCGGGCGACGAG GAATCGCGCAAGGTCATCAGAAACTATTACAACAAGGACGTCGCGAGCGC TCACAACGCCAATGCCGACGATGGCCCCAAGCCCGATCGACGCAAACCCA ACGCCACGTCATGGCCGCCAAATTCAACAGCGACCAGAGGTAGTTTGACC ACCACCACCTCCACCAATAGCAGCAGAGCGAGCAGCGAGCCCGGGTGGGC TGGAGCCGACCGCGCGGCAGGGTGGGGGCGCGGCGGAGGACGGTCCAAGC ACGGGGGCAGGGCGGGCAGAGCAGGCAGAGGGGCGTGGAGGCGTCAGGTC GACGACAACAGCAAGAATGCTAAGAAAAGTAGTCTCAGCCTGCAGCAGCA GCGGCAGCGGCAGCAGCTGCAAGGGAGAGCTGGCGGGGGCACAGGGAGGG GGCCGAGGAATCCCAGCGGGGCACGAGAGCGGGGGAGTGGAAGGAAAAAC GACAGTACCAGCAGCAGCAGCGGGGCTGCTCGCGGTGGAGGCACGGCAGG AGTGGCGGCGGAGACTTTGCACGGGTCGTGGGCGGCGAAGCGTGCGTTGA AGGAGAAGGAGGCCTCGGCCACTCGTGCGTTCAGCGGGAAGAGAATCACC TTCGGGGACGAAGGCGACTGAAAACTATTACAACAAGGACGTCGCGAGCG CTCACAACGCCAATGCCGACGATGGCCCCAAGCCCGATCGACGCAAACCC AACGCCACGTCATGGCCGCCAAATTCAACAGCGACCAGAGGTAGTTTGAC CACCACCACCTCCACCAATAGCAGCAGAGCGAGCAGCGAGCCCGGGTGGG CTGGAGCCGACCGCGCGGCAGGGTGGGGGCGCGGCGGAGGACGGTCCAAG CACGGGGGCAGGGCGGGCAGAGCAGGCAGAGGGGCGTGGAGGCGTCAGGT CGACGACAACAGCAAGAATGCTAAGAAAAGTAGTCTCAGCCTGCAGCAGC AGCGGCAGCGGCAGCAGCTGCAAGGGAGAGCTGGCGGGGGCACAGGGAGG GGGCCGAGGAATCCCAGCGGGGCACGAGAGCGGGGGAGTGGAAGGAAAAA CGACAGTACCAGCAGCAGCAGCGGGGCTGCTCGCGGTGGAGGCACGGCAG GAGTGGCGGCGGAGACTTTGCACGGGTCGTGGGCGGCGAAGCGTGCGTTG AAGGAGAAGGAGGCCTCGGCCACTCGTGCGTTCAGCGGGAAGAGAATCAC CTTCGGGGACGAAGGCGACTGA back to top
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