mRNA_P-fluviatile_contig8.14549.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14549.1
Unique NamemRNA_P-fluviatile_contig8.14549.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14549.1 vs. uniprot
Match: A0A6H5JDP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP4_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 8.730e-36
Identity = 57/71 (80.28%), Postives = 67/71 (94.37%), Query Frame = 2 
Query:  419 EGLDLINIRFTYDSIRISRPCRRCWLFLSKHLWRFRRVMYTTSEGVVVCMSAEQFAADPPDHVSKGHRLNY 631
            EG DL+N+RFT+DS+RISRPCRRCWLFLSKHLWRFRRVMYTTS+G+VVCMSA++FA+ P DHVSKGHR +Y
Sbjct:  140 EGFDLVNVRFTFDSLRISRPCRRCWLFLSKHLWRFRRVMYTTSDGLVVCMSADEFASTPSDHVSKGHRPDY 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDP4_9PHAE8.730e-3680.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2559312..2560598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_005080.1
Exons3
Model size642
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14549.1prot_P-fluviatile_contig8.14549.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2559634..2560598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.4949017-UTR-P-fluviatile_contig8:2559311..25595571622817216.4949017-UTR-P-fluviatile_contig8:2559311..2559557Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2559312..2559557 -
1693571539.1788542-UTR-P-fluviatile_contig8:2559311..25595571693571539.1788542-UTR-P-fluviatile_contig8:2559311..2559557Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2559312..2559557 -
1622817216.505476-UTR-P-fluviatile_contig8:2559579..25596331622817216.505476-UTR-P-fluviatile_contig8:2559579..2559633Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2559580..2559633 -
1693571539.1941996-UTR-P-fluviatile_contig8:2559579..25596331693571539.1941996-UTR-P-fluviatile_contig8:2559579..2559633Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2559580..2559633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.5157335-CDS-P-fluviatile_contig8:2559633..25598601622817216.5157335-CDS-P-fluviatile_contig8:2559633..2559860Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2559634..2559860 -
1693571539.2042437-CDS-P-fluviatile_contig8:2559633..25598601693571539.2042437-CDS-P-fluviatile_contig8:2559633..2559860Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2559634..2559860 -
1622817216.5257754-CDS-P-fluviatile_contig8:2560483..25605981622817216.5257754-CDS-P-fluviatile_contig8:2560483..2560598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2560484..2560598 -
1693571539.2147818-CDS-P-fluviatile_contig8:2560483..25605981693571539.2147818-CDS-P-fluviatile_contig8:2560483..2560598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2560484..2560598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14549.1

>prot_P-fluviatile_contig8.14549.1 ID=prot_P-fluviatile_contig8.14549.1|Name=mRNA_P-fluviatile_contig8.14549.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=114bp
MRFASELKQQQEREFVLPGLFDSLGLASNAKLFGEAKVWGKRRQKTRRSR
KRTTTRRPPPPLPQPRPLPPPRIRTADGGRATTTSRSSPGEGRSSCGAST
ASAAAPRPASTAR*
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mRNA from alignment at P-fluviatile_contig8:2559312..2560598-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14549.1 ID=mRNA_P-fluviatile_contig8.14549.1|Name=mRNA_P-fluviatile_contig8.14549.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1287bp|location=Sequence derived from alignment at P-fluviatile_contig8:2559312..2560598- (Porterinema fluviatile SAG_2381)
ATGAGGTTCGCGTCAGAGCTTAAGCAGCAACAAGAACGGGAGTTCGTTCT
CCCTGGCCTGTTCGACTCCCTCGGCTTGGCGAGCAACGCCAAGCTCTTCG
GCGAGGCTAAGGTGTGTGAATTAGCATGCATTAAACATTCTGGGTGTTTC
GCGCGCTAGCACAACAAAACTGAAGATTTTGTTCGTTTTTTTTTGCGGTC
GAAGTGGTGGAGGTCGCCGACAGGGCGCGCTTGCTCTGCCTCACTAGCTG
TTGAGCATACCGGGACGGTCTCTCCGCGCTCTCTCTGGCGTTTCCTGTGG
ATGGCCTTGCGCAGCATGCCCGTCCTGCAACGGGCACTCTTCAGGTAGTT
TGTTCTCTTGGTATTTAGCCCCGTATGGAGGACAGAAATTCTGTCATATA
TACTCCTTTCCGAGCTCTGCCGATCCCACTGATCGAGCTTTGATTGCAAA
GCAACCACCCGCAATTCCAAAGCCACAACATTTCCAAAGGATGCATGAAA
CACATCACACTTCGGAAACAAAACACGAAACACGAAACCTCCTCCCCGAA
AGAGGTGCAGCATACTCGCACGTGAAGCGTATCTATCAACGGCTCAATGC
TCGTTCATCGTGGCGGCGGGGCCGAAATCCTCCCCCCCCCCCGACCCGCG
ATCCATCATAATTCGTTTGCCCGCGGACGCTTTCAATCGCAACGAATGCA
CGCAGGCGATTGCCCTCCGTCGAGGGGGGGCGGGGCAGGGGGAAAGAGGC
GGCAAAAAACAAGAAGAAGCAGAAAAAGAACTACCACACGACGACCACCA
CCACCTCTCCCGCAACCGCGCCCCTTGCCACCACCAAGAATAAGGACGGC
CGACGGGGGGCGGGCTACAACCACCTCACGATCCTCGCCAGGGGAGGGCA
GGTCCTCGTGTGGGGCTTCAACAGCCTCTGCAGCGGCCCCCAGGCCAGCG
TCCACAGCGAGGTGACCGCTCTGCGGGCGCTCCTTAGCCGTCACCGCGCG
GGGGGGCTTCTTGGAGGCGGTGCCGGCGGGGGCTCCCACAGGGGCCGCCG
GTCACGGGCAAAGGAGGGACTCGACCTCATCAACATTCGGTTTACGTACG
ACTCCATCAGGATCTCGAGGCCCTGCCGCCGGTGTTGGCTGTTCCTCAGC
AAGCACTTGTGGAGGTTCCGGAGGGTGATGTACACGACCTCGGAGGGCGT
CGTGGTGTGCATGTCGGCGGAGCAGTTCGCCGCGGACCCCCCCGATCACG
TCTCGAAGGGGCACCGCCTGAACTACTACCGCGGCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2559312..2560598-

>mRNA_P-fluviatile_contig8.14549.1 ID=mRNA_P-fluviatile_contig8.14549.1|Name=mRNA_P-fluviatile_contig8.14549.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=684bp|location=Sequence derived from alignment at P-fluviatile_contig8:2559312..2560598- (Porterinema fluviatile SAG_2381)
ATGAGGTTCGCGTCAGAGCTTAAGCAGCAACAAGAACGGGAGTTCGTTCT
CCCTGGCCTGTTCGACTCCCTCGGCTTGGCGAGCAACGCCAAGCTCTTCG
GCGAGGCTAAGGTGTATGAGGTTCGCGTCAGAGCTTAAGCAGCAACAAGA
ACGGGAGTTCGTTCTCCCTGGCCTGTTCGACTCCCTCGGCTTGGCGAGCA
ACGCCAAGCTCTTCGGCGAGGCTAAGGTGTGGGGAAAGAGGCGGCAAAAA
ACAAGAAGAAGCAGAAAAAGAACTACCACACGACGACCACCACCACCTCT
CCCGCAACCGCGCCCCTTGCCACCACCAAGAATAAGGACGGCCGACGGGG
GGCGGGCTACAACCACCTCACGATCCTCGCCAGGGGAGGGCAGGTCCTCG
TGTGGGGCTTCAACAGCCTCTGCAGCGGCCCCCAGGCCAGCGTCCACAGC
GAGGTGAGGGGAAAGAGGCGGCAAAAAACAAGAAGAAGCAGAAAAAGAAC
TACCACACGACGACCACCACCACCTCTCCCGCAACCGCGCCCCTTGCCAC
CACCAAGAATAAGGACGGCCGACGGGGGGCGGGCTACAACCACCTCACGA
TCCTCGCCAGGGGAGGGCAGGTCCTCGTGTGGGGCTTCAACAGCCTCTGC
AGCGGCCCCCAGGCCAGCGTCCACAGCGAGGTGA
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