mRNA_P-fluviatile_contig8.14544.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig8.14544.1 vs. uniprot
Match: D8LIM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM1_ECTSI) HSP 1 Score: 342 bits (878), Expect = 1.690e-105 Identity = 202/354 (57.06%), Postives = 218/354 (61.58%), Query Frame = 3
Query: 2280 MESDLDFIRELTRYRGGAARAGGRIDEYEFALVLKPNDEYRDAVEALELALDLGEGATPGEGKTASPQKLDRAKRVRESLGGLQSQPPDLTSDSLGASGSPAALSSSQGGGLGSGRKGAGAP-AVRPGLSEGLEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERKKKHRLFHFVEKMREGIIVRRHLAHRTCNQIVLQSTDDCRTITWKPLLASDISGRNSGAGGGGGIFRSLRGGL------NKNRAEAIKAAHIAMVLPATEPDPSHPGFFGTRALRLSEDIPNPSRTFSLLYGDWSAAGIGGFGGGAXXXXXXXXXXXXMMEQVQGTLDLECADDGIYAMLFQVILCE 3320
MESDLDFIRELTRYR GA RA R DEYEFALVL PNDEYRDAVE LELALDLG+G G G T SPQKLD+ KR G GSGRKG G P VRPGLSEGLEG LERKKKHRLFHFV KM+EG+IVRRHLAHRTC+QIVLQSTDDCRTI+WKPLLA+D G+F+SLR G KNRAE +K AHIA+VLPAT+PDPS PGFFGTRALRLSEDIPNPSRTFSLLYGDW G M +QVQGTLDLEC DDG+YAMLFQ + +
Sbjct: 1 MESDLDFIRELTRYRSGAERAA-RNDEYEFALVLNPNDEYRDAVEVLELALDLGDG---GGGVTTSPQKLDKVKRS----------------------------------GPGSGRKGGGGPPVVRPGLSEGLEGVGGGRRTRLSLLDDLQEEEGRLTSRRKKELERKKKHRLFHFVHKMQEGVIVRRHLAHRTCDQIVLQSTDDCRTISWKPLLAADGGAXXXXXXAISGLFQSLRRGAAGSRLSKKNRAECVKTAHIAVVLPATDPDPSQPGFFGTRALRLSEDIPNPSRTFSLLYGDWGRGHCG------------------MEDQVQGTLDLECPDDGMYAMLFQRVAAD 298
BLAST of mRNA_P-fluviatile_contig8.14544.1 vs. uniprot
Match: D8LIM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM2_ECTSI) HSP 1 Score: 166 bits (420), Expect = 1.390e-41 Identity = 139/335 (41.49%), Postives = 167/335 (49.85%), Query Frame = 3
Query: 198 MSGWGSPRAAEVNIGGRSPRAVDGKEKERVSRRLGLTHSLTSPRRTPDPAASKPELPSRPPADDYLPRPRSLSP-RRTPIPPSVTGSTLSARIERASFVR---ASNAPSVPPPPQTRARFSARREELDEGGDYGDGGNGVSAAGDGGCAAPVAPSGFGVDEPLTPTPASGGSG-------------------RRVAALALAIESQRLQXXXXXXXXXXXXXXXXXXEMTLPAVITAAQSARLAADKRMRDSRSSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIASSSDFGTAATPVFGTGKSQIQASPQFW 1133
MSGWG+P++A +IGGRSPRAVDG+E++R SRRLGLTHSLTSPR P+PA KPELP+RP +DD LPRPRSLSP RR PPSVTGS LSAR+ERAS VR +SN P + +TRARFSA+R ELD+ V+A G +P P+ G RVAALA AIESQR MTLP VIT +A D+RM DSRSS P +++ G A++PV+GTG SQIQASPQ+W
Sbjct: 1 MSGWGTPKSAAGDIGGRSPRAVDGREQDRASRRLGLTHSLTSPR-APEPA--KPELPARPNSDD-LPRPRSLSPPRRNLAPPSVTGSALSARLERASLVRTASSSNGPPIXXXXKTRARFSAKRGELDD----------VAADGXXXXXXXXXXXXXXXXXXXSPAPSRGAEAPLAPXXXXXXXXXXXXXXXXRVAALAKAIESQRKAEQAQRPPEDGDETPV----MTLPDVITEGLAA---GDRRMMDSRSSLPHTVGEEEEEQSPVAVGMGAKRVGRVRGRGGAAAASQRGGPR----------STAGGIG-ASSPVYGTGNSQIQASPQYW 303 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig8.14544.1 >prot_P-fluviatile_contig8.14544.1 ID=prot_P-fluviatile_contig8.14544.1|Name=mRNA_P-fluviatile_contig8.14544.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1045bp MSGWGSPRAAEVNIGGRSPRAVDGKEKERVSRRLGLTHSLTSPRRTPDPAback to top mRNA from alignment at P-fluviatile_contig8:2502037..2512010- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig8.14544.1 ID=mRNA_P-fluviatile_contig8.14544.1|Name=mRNA_P-fluviatile_contig8.14544.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=9974bp|location=Sequence derived from alignment at P-fluviatile_contig8:2502037..2512010- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig8:2502037..2512010- >mRNA_P-fluviatile_contig8.14544.1 ID=mRNA_P-fluviatile_contig8.14544.1|Name=mRNA_P-fluviatile_contig8.14544.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=6270bp|location=Sequence derived from alignment at P-fluviatile_contig8:2502037..2512010- (Porterinema fluviatile SAG_2381)back to top |