mRNA_P-fluviatile_contig8.14542.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14542.1
Unique NamemRNA_P-fluviatile_contig8.14542.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2485927..2486428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.6470108-UTR-P-fluviatile_contig8:2485926..24861251622817218.6470108-UTR-P-fluviatile_contig8:2485926..2486125Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2485927..2486125 +
1693571544.0064442-UTR-P-fluviatile_contig8:2485926..24861251693571544.0064442-UTR-P-fluviatile_contig8:2485926..2486125Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2485927..2486125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.6580472-CDS-P-fluviatile_contig8:2486125..24864281622817218.6580472-CDS-P-fluviatile_contig8:2486125..2486428Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2486126..2486428 +
1693571544.0149653-CDS-P-fluviatile_contig8:2486125..24864281693571544.0149653-CDS-P-fluviatile_contig8:2486125..2486428Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2486126..2486428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14542.1prot_P-fluviatile_contig8.14542.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2486126..2486428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14542.1

>prot_P-fluviatile_contig8.14542.1 ID=prot_P-fluviatile_contig8.14542.1|Name=mRNA_P-fluviatile_contig8.14542.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
MFKHTTAPTHTKSRTNKTGACLGVHKIGMDYVRPFGSHPSSGCCSRFEDK
NHLRGTRGVPPGLQRNLPGSPHIPVKSIMTLPESPELRRVKLAGCPYIPL
T
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mRNA from alignment at P-fluviatile_contig8:2485927..2486428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14542.1 ID=mRNA_P-fluviatile_contig8.14542.1|Name=mRNA_P-fluviatile_contig8.14542.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=502bp|location=Sequence derived from alignment at P-fluviatile_contig8:2485927..2486428+ (Porterinema fluviatile SAG_2381)
GTGACACGAAACCCTTGGCCGGCGCCGTCCGCCGACCCCCCTGTGGTCTA
CTTGAACCATTCCGCCGCCCGCTGTCTCTTGTGCAATATCTGCGGCGAAT
GATGAACAACCAACAGAGCTGCAACCTGTGGCTTGAGAGACTACACACAA
CACACCTGGGAACGAAAGGGGACACGTGAAAGGGACGGGATTGTGTCGCA
TGTTCAAACACACGACGGCACCTACCCACACAAAGTCACGAACGAACAAG
ACCGGAGCCTGCCTTGGCGTTCACAAAATAGGCATGGATTATGTTCGCCC
ATTCGGGAGTCATCCGTCGTCAGGGTGCTGCTCGAGGTTTGAAGACAAGA
ATCACCTCCGTGGGACACGAGGGGTTCCCCCTGGCCTTCAACGAAACCTG
CCGGGTTCCCCGCACATCCCCGTCAAGTCCATAATGACGTTGCCGGAATC
CCCCGAGCTTCGACGAGTAAAACTTGCTGGATGCCCCTACATCCCCCTTA
CA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2485927..2486428+

>mRNA_P-fluviatile_contig8.14542.1 ID=mRNA_P-fluviatile_contig8.14542.1|Name=mRNA_P-fluviatile_contig8.14542.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig8:2485927..2486428+ (Porterinema fluviatile SAG_2381)
ATGTTCAAACACACGACGGCACCTACCCACACAAAGTCACGAACGAACAA
GACCGGAGCCTGCCTTGGCGTTCACAAAATAGGCATGGATTATGTTCGCC
CATTCGGGAGTCATCCGTCGTCAGGGTGCTGCTCGAGGTTTGAAGACAAG
AATCACCTCCGTGGGACACGAGGGGTTCCCCCTGGCCTTCAACGAAACCT
GCCGGGTTCCCCGCACATCCCCGTCAAGTCCATAATGACGTTGCCGGAAT
CCCCCGAGCTTCGACGAGTAAAACTTGCTGGATGCCCCTACATCCCCCTT
ACAATGTTCAAACACACGACGGCACCTACCCACACAAAGTCACGAACGAA
CAAGACCGGAGCCTGCCTTGGCGTTCACAAAATAGGCATGGATTATGTTC
GCCCATTCGGGAGTCATCCGTCGTCAGGGTGCTGCTCGAGGTTTGAAGAC
AAGAATCACCTCCGTGGGACACGAGGGGTTCCCCCTGGCCTTCAACGAAA
CCTGCCGGGTTCCCCGCACATCCCCGTCAAGTCCATAATGACGTTGCCGG
AATCCCCCGAGCTTCGACGAGTAAAACTTGCTGGATGCCCCTACATCCCC
CTTACA
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