mRNA_P-fluviatile_contig8.14525.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14525.1
Unique NamemRNA_P-fluviatile_contig8.14525.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: D7G630_ECTSI (20S proteasome alpha subunit C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G630_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 4.690e-108
Identity = 214/369 (57.99%), Postives = 237/369 (64.23%), Query Frame = 3 
Query:   57 MHRRRQLTPRSYLVGVMWAAGVL--GAMGAQSADSKYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQMGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE---AAGGGTPRGDXXXXXXXXXXXXSRMGLGEAVRLAARVLSRERSRERKSRGILQTTRADEGEGGLDGNGDYNARKPRRDGQRKAEPKGEREREDFGDVGMEIATIAVESDGAGGTAAASAYIY--SDEDVNRVLQGLEGKSGVREGGGS*SRAR 1142
            M RRR+L P + +V V+ AA  L   A+GAQSADSKYDSGTTMFSPKGRLYQVEYAAE                       TI NKRLQ+GDQRVKTSR+D+H+VC SAGLTADAMVLV+DCR +AQQH+LTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRG QLYKT+PSGNFGAFKAVAVGAGASRLSAELA+ Y E   A  GG     XX            +GLGEAVRL+ARVLSRER+RERKSR I                                        +DFGD GMEIATIAVE                 SDE+V RVL  +E +    +G GS SR +
Sbjct:    1 MARRRKL-PHAAIVSVLSAAACLLSAALGAQSADSKYDSGTTMFSPKGRLYQVEYAAE-----------------------TIRNKRLQVGDQRVKTSRVDSHIVCTSAGLTADAMVLVKDCRVSAQQHSLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGLQLYKTEPSGNFGAFKAVAVGAGASRLSAELASGYEELLAATNGGAEAAXXXSTSSGS------IGLGEAVRLSARVLSRERARERKSRDIRTAAXXXXXXXXXXXX------------------------QDFGDFGMEIATIAVEGGXXXXXXXXXXXXXXXSDEEVERVLNSIEEEDVDGKGVGSGSRGK 315
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BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: A0A6H5KZL2_9PHAE (Proteasome subunit alpha type n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL2_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 2.210e-74
Identity = 124/151 (82.12%), Postives = 137/151 (90.73%), Query Frame = 3 
Query:   57 MHRRRQLTPRSYLVGVMWAAGVL--GAMGAQSADSKYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQMGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQ 503
            M RRR+L P + +VGV+ AA  L   A+GAQSADSKYDSGTTMFSPKGRLYQVEYAAEAVARARP VGICTDEG+VLCSLKTI NKRLQ+GDQRVKTSR+D+H+VC SAGLTADAMVLV+DCR +AQQH+LTFQEPIPVQKLAAHVADVKQ
Sbjct:    1 MARRRKL-PHATIVGVLSAAACLLPAALGAQSADSKYDSGTTMFSPKGRLYQVEYAAEAVARARPAVGICTDEGVVLCSLKTIRNKRLQVGDQRVKTSRVDSHIVCTSAGLTADAMVLVKDCRVSAQQHSLTFQEPIPVQKLAAHVADVKQ 150
[Close]
BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: E1ZHW7_CHLVA (Proteasome subunit alpha type n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZHW7_CHLVA)

HSP 1 Score: 193 bits (490), Expect = 2.380e-55
Identity = 96/181 (53.04%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:  156 KYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQ---MGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE 689
            +YDS TT+FSP+GRLYQVEYA EA++ A   VGI   +G+VL + K I +K L    +G +R K  R+D H+ CA AG+TADA +LV  CR  AQ+H  T+QEP+PV +L   + D KQ YTQ+GGLRP+GVS+L AGWD+ RGFQLY++DPSGN+G +KA A+GA     +  L  +Y++
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISNAGSCVGILAKDGVVLAAEKRITSKLLDTQAVGVRREKMYRLDDHIACAVAGITADANILVNTCRLQAQRHLFTYQEPMPVDQLVRGLCDTKQGYTQYGGLRPFGVSLLYAGWDKQRGFQLYQSDPSGNYGGWKATAIGANHQAATNVLQGDYKD 184
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BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: A0A7S1WYT3_9CHLO (Proteasome subunit alpha type n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WYT3_9CHLO)

HSP 1 Score: 192 bits (487), Expect = 8.450e-55
Identity = 96/181 (53.04%), Postives = 128/181 (70.72%), Query Frame = 3 
Query:  156 KYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQ---MGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE 689
            +YDS TT+FSP+GRLYQVEYA EA++ A   VGI   +G+VL + K I +K L    +G +R K  ++D H+ CA AG+TADA +L+  CR +AQ++T  +QEPIPV++L  ++ D KQ YTQ GGLRP+GVS+L AGWDE  GFQLY +DPSGN+G +KA AVGA        L  +Y+E
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISNAGAAVGILATDGVVLAAEKRITSKLLDTAAVGVRREKMYKLDEHIACAVAGITADANILINTCRLSAQRYTFAYQEPIPVEQLVRNLCDTKQGYTQFGGLRPFGVSLLYAGWDEHHGFQLYHSDPSGNYGGWKATAVGANNQAAQNILKQDYKE 184
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BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: A0A1D1ZPR8_AUXPR (Proteasome subunit alpha type n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZPR8_AUXPR)

HSP 1 Score: 192 bits (487), Expect = 8.450e-55
Identity = 97/181 (53.59%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:  156 KYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQ---MGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE 689
            +YDS TT+FSP+GRLYQVEYA EA++ A   VG+   +G+VL + K I +K L    +G +R K  ++D H+ CA AG+TADA +LV  CR  AQ++TL FQEPIPV +L   + D KQ YTQ+GGLRP+GVS+L AGWDE RGFQLY++DPSGN+G +KA ++GA     +  L  +Y E
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISNAGSCVGVLATDGVVLAAEKKITSKLLDTTAVGVKREKLYQLDDHVACAVAGITADANILVNTCRLHAQRYTLQFQEPIPVDQLVRALCDTKQGYTQYGGLRPFGVSLLYAGWDEHRGFQLYQSDPSGNYGGWKATSIGANHQAATNVLQGDYAE 184
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BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: A0A7S0L2D8_9EUKA (Proteasome subunit alpha type (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2D8_9EUKA)

HSP 1 Score: 191 bits (484), Expect = 3.360e-54
Identity = 97/178 (54.49%), Postives = 124/178 (69.66%), Query Frame = 3 
Query:  156 KYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQMGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE 689
            +YDS TT FSP+GRL+QVEYA EA+A+A   VGI  D+GIVL + K I +K L  G    K  +ID H+ CA AG+T+DA +L++  R  AQQH   ++EPIP+  L  ++ DVKQ YTQ GGLRP+GVS L AGWDE +GFQLY++DPSGNF  +KA A+GA  S     L  EY+E
Sbjct:   20 RYDSRTTTFSPEGRLFQVEYAIEAIAQAGAAVGIKADKGIVLAAEKRITSKLLDKGTSTEKMYKIDDHVSCAVAGITSDANILIQRARLIAQQHFFQYKEPIPIDMLLRNICDVKQGYTQFGGLRPFGVSFLFAGWDEHQGFQLYQSDPSGNFAGWKARAIGANNSAAQTLLKEEYKE 197
[Close]
BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: A0A061QSZ7_9CHLO (Proteasome subunit alpha type n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QSZ7_9CHLO)

HSP 1 Score: 190 bits (483), Expect = 3.410e-54
Identity = 95/181 (52.49%), Postives = 127/181 (70.17%), Query Frame = 3 
Query:  156 KYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQ---MGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE 689
            +YDS TT+FSP+GRLYQVEYA EA++ A   +GI  ++G+VL + K I +K L    +G +R K  ++D H+ CA AG+TADA +L+  CR +AQ++   +QEPIPV++L   + D KQ YTQ GGLRP+GVS+L AGWDE  GFQLY +DPSGNFG +KA AVGA        L  +Y+E
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISNAGAAIGILAEDGVVLAAEKRITSKLLDTKAVGVRREKMYKLDDHIACAVAGITADANILINTCRLSAQRYLFAYQEPIPVEQLVRSLCDTKQGYTQFGGLRPFGVSLLYAGWDEHHGFQLYHSDPSGNFGGWKATAVGANHQAAQNILKQDYKE 184
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BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: A0A7S3A446_9RHOD (Proteasome subunit alpha type (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A446_9RHOD)

HSP 1 Score: 190 bits (482), Expect = 4.250e-54
Identity = 94/178 (52.81%), Postives = 126/178 (70.79%), Query Frame = 3 
Query:  156 KYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQMGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE 689
            +YDS TT+FSP+GRLYQVEYA EA+  A   VG+ +DEGIVL + K I +K L++     K   ID H+ CA AG+TADA +L+   R +AQQ+  ++QEPIP++ L   + D KQ YTQ GGLRP+GVS L AGWD   GFQLY++DPSGNFG +KA A+GA ++   + L ++Y+E
Sbjct:   51 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGAAVGVKSDEGIVLAAEKKITSKLLEVTKSSEKMYVIDEHIACAVAGITADANILINKARLSAQQYMYSYQEPIPIEYLLQLICDTKQGYTQFGGLRPFGVSFLFAGWDRHYGFQLYQSDPSGNFGGWKATAIGANSTAAQSILKSDYKE 228
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BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: A0A383WPX1_TETOB (Proteasome subunit alpha type n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383WPX1_TETOB)

HSP 1 Score: 190 bits (482), Expect = 4.380e-54
Identity = 95/181 (52.49%), Postives = 129/181 (71.27%), Query Frame = 3 
Query:  156 KYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQ---MGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE 689
            +YDS TT+FSP+GRLYQVEYA EA++ A   +G+   +G+VL + K I +K L    +G +R K  ++D HL CA AG+TADA +L+  CRATAQ++   +QEP+PV++L   + D KQ YTQ GG RP+GVS+L AGWDE  GFQLY++DPSGN+G +KAVA+G G +     L  EY+E
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISNAGAAIGMLCTDGVVLVAEKKITSKLLDSKAVGVRREKMYKLDDHLACAVAGITADANILINTCRATAQRYYFAYQEPMPVEQLVRALCDTKQGYTQFGGQRPFGVSLLYAGWDEHYGFQLYQSDPSGNYGGWKAVAIGGGHAAAQNLLKTEYKE 184
[Close]
BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Match: A0A7S0YDQ4_9CHLO (Proteasome subunit alpha type n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YDQ4_9CHLO)

HSP 1 Score: 190 bits (482), Expect = 5.080e-54
Identity = 94/181 (51.93%), Postives = 135/181 (74.59%), Query Frame = 3 
Query:  156 KYDSGTTMFSPKGRLYQVEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQ---MGDQRVKTSRIDAHLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQAYTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASRLSAELAAEYRE 689
            +YDS TT+FSP+GRL+QVEYA EA++ A  T+GI T EGI L + K I +K L    +G +R K  ++D H+ C+ AGLT+DA +L+  CR +AQQ+  ++QEP+PV++LA +++DVKQ YTQ GG RP+GVSML+AGWDE  G+QLY T+PSGN+G ++A+A+G+G    +  L  +Y+E
Sbjct:    4 RYDSRTTIFSPEGRLFQVEYAVEAISNAGATIGILTKEGIALIAEKRILSKLLDTKAVGVRREKIHKLDDHISCSVAGLTSDANILINKCRLSAQQYLFSYQEPMPVEQLARNLSDVKQGYTQFGGQRPFGVSMLIAGWDEHYGWQLYMTNPSGNYGGWQAMAIGSGNQVANNMLKTDYKE 184
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G630_ECTSI4.690e-10857.9920S proteasome alpha subunit C n=1 Tax=Ectocarpus ... [more]
A0A6H5KZL2_9PHAE2.210e-7482.12Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
E1ZHW7_CHLVA2.380e-5553.04Proteasome subunit alpha type n=1 Tax=Chlorella va... [more]
A0A7S1WYT3_9CHLO8.450e-5553.04Proteasome subunit alpha type n=1 Tax=Tetraselmis ... [more]
A0A1D1ZPR8_AUXPR8.450e-5553.59Proteasome subunit alpha type n=1 Tax=Auxenochlore... [more]
A0A7S0L2D8_9EUKA3.360e-5454.49Proteasome subunit alpha type (Fragment) n=1 Tax=C... [more]
A0A061QSZ7_9CHLO3.410e-5452.49Proteasome subunit alpha type n=1 Tax=Tetraselmis ... [more]
A0A7S3A446_9RHOD4.250e-5452.81Proteasome subunit alpha type (Fragment) n=2 Tax=R... [more]
A0A383WPX1_TETOB4.380e-5452.49Proteasome subunit alpha type n=2 Tax=Scenedesmace... [more]
A0A7S0YDQ4_9CHLO5.080e-5451.93Proteasome subunit alpha type n=1 Tax=Polytomella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2298906..2303397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.2
Seed ortholog evalue1.5e-88
Seed eggNOG ortholog2880.D7G630
Preferred namePSMA4
KEGG rclassRC00005
KEGG koko:K02728,ko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03050,ko03410,ko03420,ko03430,map03030,map03050,map03410,map03420,map03430
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000932,GO:0001673,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005829,GO:0005839,GO:0005840,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0022607,GO:0022626,GO:0030071,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080129,GO:0090068,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0178@2759
EC3.4.25.1,6.5.1.1,6.5.1.6,6.5.1.7
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03032,ko03051,ko03400
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProteasome alpha-subunit, N-terminal domain
Ec32 orthologEc-11_004900.1
Exons6
Model size1327
Cds size1074
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14525.1prot_P-fluviatile_contig8.14525.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2299103..2303341 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817244.8861182-UTR-P-fluviatile_contig8:2298905..22991021622817244.8861182-UTR-P-fluviatile_contig8:2298905..2299102Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2298906..2299102 -
1693571651.2218175-UTR-P-fluviatile_contig8:2298905..22991021693571651.2218175-UTR-P-fluviatile_contig8:2298905..2299102Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2298906..2299102 -
1622817244.9747102-UTR-P-fluviatile_contig8:2303341..23033971622817244.9747102-UTR-P-fluviatile_contig8:2303341..2303397Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2303342..2303397 -
1693571651.287141-UTR-P-fluviatile_contig8:2303341..23033971693571651.287141-UTR-P-fluviatile_contig8:2303341..2303397Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2303342..2303397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817244.8995576-CDS-P-fluviatile_contig8:2299102..22996261622817244.8995576-CDS-P-fluviatile_contig8:2299102..2299626Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2299103..2299626 -
1693571651.23204-CDS-P-fluviatile_contig8:2299102..22996261693571651.23204-CDS-P-fluviatile_contig8:2299102..2299626Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2299103..2299626 -
1622817244.9121091-CDS-P-fluviatile_contig8:2299957..23000601622817244.9121091-CDS-P-fluviatile_contig8:2299957..2300060Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2299958..2300060 -
1693571651.23989-CDS-P-fluviatile_contig8:2299957..23000601693571651.23989-CDS-P-fluviatile_contig8:2299957..2300060Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2299958..2300060 -
1622817244.9249365-CDS-P-fluviatile_contig8:2300866..23009501622817244.9249365-CDS-P-fluviatile_contig8:2300866..2300950Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2300867..2300950 -
1693571651.247761-CDS-P-fluviatile_contig8:2300866..23009501693571651.247761-CDS-P-fluviatile_contig8:2300866..2300950Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2300867..2300950 -
1622817244.9412596-CDS-P-fluviatile_contig8:2301859..23020081622817244.9412596-CDS-P-fluviatile_contig8:2301859..2302008Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2301860..2302008 -
1693571651.2592895-CDS-P-fluviatile_contig8:2301859..23020081693571651.2592895-CDS-P-fluviatile_contig8:2301859..2302008Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2301860..2302008 -
1622817244.9528553-CDS-P-fluviatile_contig8:2302552..23025981622817244.9528553-CDS-P-fluviatile_contig8:2302552..2302598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2302553..2302598 -
1693571651.2708097-CDS-P-fluviatile_contig8:2302552..23025981693571651.2708097-CDS-P-fluviatile_contig8:2302552..2302598Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2302553..2302598 -
1622817244.9650445-CDS-P-fluviatile_contig8:2303173..23033411622817244.9650445-CDS-P-fluviatile_contig8:2303173..2303341Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2303174..2303341 -
1693571651.2791827-CDS-P-fluviatile_contig8:2303173..23033411693571651.2791827-CDS-P-fluviatile_contig8:2303173..2303341Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2303174..2303341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14525.1

>prot_P-fluviatile_contig8.14525.1 ID=prot_P-fluviatile_contig8.14525.1|Name=mRNA_P-fluviatile_contig8.14525.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=358bp
MHRRRQLTPRSYLVGVMWAAGVLGAMGAQSADSKYDSGTTMFSPKGRLYQ
VEYAAEAVARARPTVGICTDEGIVLCSLKTIHNKRLQMGDQRVKTSRIDA
HLVCASAGLTADAMVLVEDCRATAQQHTLTFQEPIPVQKLAAHVADVKQA
YTQHGGLRPWGVSMLLAGWDESRGFQLYKTDPSGNFGAFKAVAVGAGASR
LSAELAAEYREAAGGGTPRGDGGGAGGSSSSSSSRMGLGEAVRLAARVLS
RERSRERKSRGILQTTRADEGEGGLDGNGDYNARKPRRDGQRKAEPKGER
EREDFGDVGMEIATIAVESDGAGGTAAASAYIYSDEDVNRVLQGLEGKSG
VREGGGS*
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mRNA from alignment at P-fluviatile_contig8:2298906..2303397-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14525.1 ID=mRNA_P-fluviatile_contig8.14525.1|Name=mRNA_P-fluviatile_contig8.14525.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4492bp|location=Sequence derived from alignment at P-fluviatile_contig8:2298906..2303397- (Porterinema fluviatile SAG_2381)
CCGCTACGTTCTTTTACGAGTCGTGCTGGAGCCTGCGGTGCTTGCTCCTA
AGCGTAATGCATCGGAGACGGCAGCTCACGCCCCGTTCCTACCTGGTAGG
TGTAATGTGGGCAGCAGGTGTGCTGGGTGCAATGGGAGCACAATCGGCGG
ACTCGAAGTACGATTCGGGGACGACAATGTTCAGCCCCAAGGGACGTTTG
TATCAAGTCGAATACGCCGCCGAGGTATAGTCGAACCTGCCCACGTGGTT
CGTTTTTTGGAATACTTGATCATGCCGCAGCGGTCACCAATCCTGCTATG
CAGCCCCCCCAAAAGGGCTGAGGCATGTTTGAAAAGTAATGTTGCAGTTT
CTAGCAATTGCAACCAACTCTCTGCTTAGTATGCGTAACCAACTCTATTC
ATGCAGAGGGACTGCAAAAAGTGGTGTGTGACGGGGGGAGGCGATATCCT
AGGTTTGGTTTCTGGTGAAATCCGGCAACGTTACAAGGGCCTGCATTCAG
AGTATCGTCCGTCAGCGAGTCCCGGCACTGTTGCCATCTTGCTCTTCGAC
GTTGTTCGGATTTAAGAAACCGGACGAGTTATGTTGAAGTCATTCGCTCG
ACCTTGTTGGGCACCTTGTTGGGTGGTCTTCAAGTTGTTGGGCCAGGTGT
CGGGTTGTTGTTTGTGCGTCGGTGTTGGTTGCGTTGGCTTGATCACACAC
CTCACGGTCTCGCGCCACCCTCTGTCGTCGACTGCGCCGGTTACAAACTG
ATACCTGCTTCTGCCGTTTGACGTCGTACGCCGTGCACGAGGATTGCAGG
CGGTCGCCAGAGCGAGGCCTACGGTTGGGATCTGCACCGACGAAGGTGCG
CACCCTTTCCAAGCGCGACCTGAAACCTGCGGCGATCCGTTTATGCGCCA
ACGCGCTGGAGTAGTTGGCCCGGTTGTGTGGAAGGGTGGGGTGCGCGCAC
ACGTCCATGCTCCCCCCTGCGCGGCGCGGGTGACCTACTCGTGCGAGAGC
CCGGAGGGAGGAAAGGAGTGAGATTGGGTTATTGGCTTTTGTTGCTCGGA
GCCTGGCGTATTTCCGGGGGCCTTCGTCTGTGTCTCCATCTCGTCAGGTA
GACCCGACACACCTCGTTTCGGGTCTTTGGACGAGACCTCCTGCTGCTGT
TGCTGCTCCCCTCCCCGCCTCTCGGGCATCGTTCGAGCGTTGCCGAAGCC
GCTTGATAGACACACGGGATCGAAATTGTGTGTGGTATTACAGCAAACAA
ATCATCCCCCCTCCCCCACCCGCACACCTCAATGTGCTTTCAAGTATGCG
CTCTTGTTTTTTTCTCTCCACGCCCAATACTTCTCCCTGCCCTCCCACTG
TGCACGTGCGCCCTCTTCCTCCCTGTCCGTCGCGCTCAGGAATTGTGTTG
TGCTCGCTGAAGACGATCCACAACAAGCGGCTGCAGATGGGCGATCAGCG
GGTAAAGACGAGCCGCATTGACGCACACCTCGTGTGCGCCTCGGCGGGGC
TGACGGCCGACGCAATGGTACTCGTCGAAGATTGCAGGGTGAGGGAAGGG
GCATGCCAACGAGCGAAGACCAGGGGAGCGGGGTGGAGCGAGAGAGAAAG
AGAAACAGAAAGCGAGAGATCGAGAGAGATGAAGAAAGAGTTGCTCCTGT
TCGTAAGCGTACGAAGTTCTAGGTCTGCCTGCCTGTCTCTTTCTCTTTGT
CTGTCTGTCCGCCTGTCCACCTGTCTGTCTATCTGCCGCTCTCTCTGTTC
GCTTGTCGGTTTGTCTGTGTCTGTGTGTCTGTCTATTTGTCTGTCAGTTG
TCTGTCCGTCTTGTCTGTCTGTCTATCCATCTGCCTATCTGCCTGTCTGG
CTGACCCCTTGGTCTGCCACCGCTCTCTAATTCTTTCATCGACATGGCCC
TTTCGTACGCTTCAACTCCTCCTTTTAACGTGTGGATCAAACTGGATCAA
ACTACGCTCATGTTCGACTCCCTGCCTAACGTGGACTCGACTATGTGGAC
TAGGAGCTCTGCTGCTCTTGAAGCTTCGATAAAAACAAGGCCTCAAAGCC
CTGGATTCCCCCCCTTCCCCCGTCTAGCATGCGATCCGTTGGCACTGCAA
ATCTGTCGTTTTGGTGGATTTTTCGCGAAACAAAGAGTAGGCGGGCATCA
ATCATGATTATCAATAAAGAGTGGGTTCGCTCAAGAATTCGGTCTTAACA
TTTACAAATTGGATTGTCCCGACGTTGAAGGCAGATACGTGGAGAACGCA
TCCACACGAAAAATAAACCGGAGTTTAGTTTTGGCGTTCTTCAGCTTCTT
GGTGGAAGGGCAAGCAGCAGAGCCCTTTCCCTAAAAAATTTTGGTCCGTC
TTTCCTACACATTGCGGAGCTCCCGTCTTGGCGCCCTATCCGCCTCCATC
CGGTCTCGTCTGCTGCCGCCGCCCGGCCTACCCGCTCGTGCAAACAGGCA
ACTGCACAGCAACACACGTTAACTTTTCAGGAGCCTATCCCGGTACAGAA
GCTGGCGGCCCATGTTGCCGACGTGAAACAGGTGCGCGTGGGTGTGCGTG
GTTGCCCGTGGGTGCGTTTCTGCCTTGTCAGTAATGTCGACCGCGCTGTG
CGGCTGGTCGACTCAACGCCATCTTCAGCAGGTGAAATATCTTTGTTAAC
GCTATTTCCCCATCCGATGTACGTTGCTCGCGTGTTTATCACGACATTTT
GAAGCGTGCTTCAGCCGGTTGATCGACGACGGTGTGCATGTGAGCGTGCG
ACTTATTCACATTTCTCCATCTGCCGCGGCGTAGACCAGGGGAGATGCGA
ACATTTCGCGCGAGCCAACGGGTCGCGTGCCTGTGCTTGCGTGGACCCAT
CGCCCTCCTGGCCCGCAGGCCTTGATAGCAATCGGAGATCCGGTCAATTA
TTCCCCTTGTTTGACTCGGAATCTTTAAGGGCCTTGCCTCTTGCTGTTTA
CGCTTGCTTTTTTTTTGCTTGCCGGCCTTCTTCCTGCGTTTTGATCCTCC
CGGCGGGCAAGAAACGATTTTAATTAAACGACATTTTTATTGGGAGATGC
ACAAGCTCCCCCCGGTAACGCCCAGTGAAGAATGCTTTGGATGCACTGTA
GAGCAATTGGAAGCTGAGGCTGCAGCTTCCTCAAGATGATGATGCGTGTG
CGGAGAAACTGAAGGTGAATCATTGTGAGTTGCACTTGAAGGATTCGCAT
GATCATTACGTGCAGGGTGTATGCAAGGAAAAATGCACAAATCCACACCC
ACTGCACCTGAGAATGAGTTTTAAAGCTCTCCTACAGCTGGCAAGCTAAC
CCCCCCGCCATCGAATCTCGTGTTTGGTCGAACGAAGGCGTACACGCAAC
ACGGTGGGCTGAGGCCGTGGGGCGTATCGATGCTGCTGGCTGGGTGGGAC
GAATCGAGGGGGTTCCAGCTGTACAAGACCGACCCGAGCGGTGGGTCCTA
GCGTAGAATCAGCCCCCGCCCGCCACGAAACAATGTGGTGTCGCGAGAAT
TCCGCATTTCTGACAAGTCTCGCCACATGGAACGGGGAGGGAGGAGTCGT
GCATGGTTTGTCGAGAAGTGCGACATGAAGCTAGGGGCTTCGTTTCGTTT
GTCTTACAGGCACTGAACAATCACGTGTCGGAAGCATGGCAATCGCCACA
GTTTACACTCGGTGTAGTATAAGGACCCAGTCTTTCACTTTTGTTGTACG
CGCAGAGTTGAAATACCAATGGCAGCACCCTTTTCAGTACCCCCTCGGAA
ACATTGCGAACAATGTTCCAGGAAATTTCGGCGCATTCAAAGCGGTGGCC
GTCGGAGCGGGCGCCTCGCGACTTTCTGCCGAGCTAGCAGCCGAGTACAG
GGAGGCAGCTGGGGGAGGGACTCCGAGGGGCGACGGCGGCGGTGCCGGCG
GTAGCAGCAGCAGCAGCAGCAGCAGGATGGGACTCGGAGAAGCTGTTCGG
CTCGCTGCAAGGGTGCTCAGCCGAGAGAGATCGAGAGAACGAAAATCACG
AGGCATTTTGCAAACAACAAGGGCAGATGAGGGAGAGGGGGGATTGGACG
GCAACGGCGATTACAACGCGAGAAAACCGAGGCGGGATGGGCAGCGGAAG
GCGGAGCCCAAGGGGGAGCGGGAGCGGGAAGATTTCGGCGATGTCGGCAT
GGAGATTGCGACCATAGCTGTGGAGAGCGACGGCGCTGGAGGGACGGCCG
CGGCGAGCGCGTACATCTACAGCGACGAGGACGTTAACAGAGTCTTGCAG
GGCTTGGAGGGAAAAAGCGGCGTCAGAGAGGGCGGGGGGTCGTAGAGTAG
AGCAAGGCCGCCTCGGGAGAGAGCTGGGTTTTGACGATTTCGCCCGTGAA
AGTCGTTTGAAAGATGAAAAAATGGTGCATCCAAATTACCCTCCTTGTTT
CCTTGTTTTTGTGCCTTGTCTCGTGGGAGTCAGCCAGCACTTAAGTGTAC
GTCAAAACGAAAATCAGCAGCGTTGCTCTTAGCAGCGAGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2298906..2303397-

>mRNA_P-fluviatile_contig8.14525.1 ID=mRNA_P-fluviatile_contig8.14525.1|Name=mRNA_P-fluviatile_contig8.14525.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2148bp|location=Sequence derived from alignment at P-fluviatile_contig8:2298906..2303397- (Porterinema fluviatile SAG_2381)
ATGCATCGGAGACGGCAGCTCACGCCCCGTTCCTACCTGGTAGGTGTAAT
GTGGGCAGCAGGTGTGCTGGGTGCAATGGGAGCACAATCGGCGGACTCGA
AGTACGATTCGGGGACGACAATGTTCAGCCCCAAGGGACGTTTGTATCAA
GTCGAATACGCCGCCGAGATGCATCGGAGACGGCAGCTCACGCCCCGTTC
CTACCTGGTAGGTGTAATGTGGGCAGCAGGTGTGCTGGGTGCAATGGGAG
CACAATCGGCGGACTCGAAGTACGATTCGGGGACGACAATGTTCAGCCCC
AAGGGACGTTTGTATCAAGTCGAATACGCCGCCGAGGCGGTCGCCAGAGC
GAGGCCTACGGTTGGGATCTGCACCGACGAAGGCGGTCGCCAGAGCGAGG
CCTACGGTTGGGATCTGCACCGACGAAGGAATTGTGTTGTGCTCGCTGAA
GACGATCCACAACAAGCGGCTGCAGATGGGCGATCAGCGGGTAAAGACGA
GCCGCATTGACGCACACCTCGTGTGCGCCTCGGCGGGGCTGACGGCCGAC
GCAATGGTACTCGTCGAAGATTGCAGGGAATTGTGTTGTGCTCGCTGAAG
ACGATCCACAACAAGCGGCTGCAGATGGGCGATCAGCGGGTAAAGACGAG
CCGCATTGACGCACACCTCGTGTGCGCCTCGGCGGGGCTGACGGCCGACG
CAATGGTACTCGTCGAAGATTGCAGGGCAACTGCACAGCAACACACGTTA
ACTTTTCAGGAGCCTATCCCGGTACAGAAGCTGGCGGCCCATGTTGCCGA
CGTGAAACAGGCAACTGCACAGCAACACACGTTAACTTTTCAGGAGCCTA
TCCCGGTACAGAAGCTGGCGGCCCATGTTGCCGACGTGAAACAGGCGTAC
ACGCAACACGGTGGGCTGAGGCCGTGGGGCGTATCGATGCTGCTGGCTGG
GTGGGACGAATCGAGGGGGTTCCAGCTGTACAAGACCGACCCGAGCGGCG
TACACGCAACACGGTGGGCTGAGGCCGTGGGGCGTATCGATGCTGCTGGC
TGGGTGGGACGAATCGAGGGGGTTCCAGCTGTACAAGACCGACCCGAGCG
GAAATTTCGGCGCATTCAAAGCGGTGGCCGTCGGAGCGGGCGCCTCGCGA
CTTTCTGCCGAGCTAGCAGCCGAGTACAGGGAGGCAGCTGGGGGAGGGAC
TCCGAGGGGCGACGGCGGCGGTGCCGGCGGTAGCAGCAGCAGCAGCAGCA
GCAGGATGGGACTCGGAGAAGCTGTTCGGCTCGCTGCAAGGGTGCTCAGC
CGAGAGAGATCGAGAGAACGAAAATCACGAGGCATTTTGCAAACAACAAG
GGCAGATGAGGGAGAGGGGGGATTGGACGGCAACGGCGATTACAACGCGA
GAAAACCGAGGCGGGATGGGCAGCGGAAGGCGGAGCCCAAGGGGGAGCGG
GAGCGGGAAGATTTCGGCGATGTCGGCATGGAGATTGCGACCATAGCTGT
GGAGAGCGACGGCGCTGGAGGGACGGCCGCGGCGAGCGCGTACATCTACA
GCGACGAGGACGTTAACAGAGTCTTGCAGGGCTTGGAGGGAAAAAGCGGC
GTCAGAGAGGGCGGGGGGTCGTAGGAAATTTCGGCGCATTCAAAGCGGTG
GCCGTCGGAGCGGGCGCCTCGCGACTTTCTGCCGAGCTAGCAGCCGAGTA
CAGGGAGGCAGCTGGGGGAGGGACTCCGAGGGGCGACGGCGGCGGTGCCG
GCGGTAGCAGCAGCAGCAGCAGCAGCAGGATGGGACTCGGAGAAGCTGTT
CGGCTCGCTGCAAGGGTGCTCAGCCGAGAGAGATCGAGAGAACGAAAATC
ACGAGGCATTTTGCAAACAACAAGGGCAGATGAGGGAGAGGGGGGATTGG
ACGGCAACGGCGATTACAACGCGAGAAAACCGAGGCGGGATGGGCAGCGG
AAGGCGGAGCCCAAGGGGGAGCGGGAGCGGGAAGATTTCGGCGATGTCGG
CATGGAGATTGCGACCATAGCTGTGGAGAGCGACGGCGCTGGAGGGACGG
CCGCGGCGAGCGCGTACATCTACAGCGACGAGGACGTTAACAGAGTCTTG
CAGGGCTTGGAGGGAAAAAGCGGCGTCAGAGAGGGCGGGGGGTCGTAG
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