mRNA_P-fluviatile_contig8.14523.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig8.14523.1 vs. uniprot
Match: D7G626_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G626_ECTSI) HSP 1 Score: 405 bits (1042), Expect = 1.970e-121 Identity = 489/795 (61.51%), Postives = 543/795 (68.30%), Query Frame = 1
Query: 85 MSRFLEYGVFVPDSGLNRTSTSSTTPPATGQWEKVGGKWVKLGPDGKPM----ARTLPASAKSMIGGDAQGG-----GSSGGVASWEKTTKTMTQKDVFGETSDDDGSDDGNNSPTIP---RTRSNSSVAGSAVAQPTAAASRXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSGGQRRSGGSI---------------NSGGLTIA----GNYHGNAAGTEEIE----------AATRHRAMLTPGMSRSFSADEVVSKFFGEDATDAAA--ANGHRGVGGISSELAPGEGENAACVGEAAESGSKG--RGSEGGKHRRTGSGSSNPANSPGVKRG---EGSEPVETRDVACQWDGSEMGDADEEDEIMEVELPDTPDCRALTAVLRLYDHAKLENRRMGKLSSRPGWGVEENIENWDGVYLDTEDRVVALDVDGDPEDRQAMLIGPLPVELSEMDHLEQLTMRRHRFKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKLLVFNAGHNIGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTNLQQLWLQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPRYRYFKILPGNFALGEKVAPNDQEIEAASRRKPSKNAMEHASAALAQSKQAKSNQQQPHRD----------SMSMSPPRGSNPASRVFHSEGGTDRRESVRGRNRETAGEMSAEDARRAGTNRNSISRKLRGIKRIMGKKATPPTS 2295
MSRFLEYGVFVPD ST S+ ATGQW +VGGKW K+GPDGKP+ + S+ +GG +GG G S + +TT M +G ++G DD ++ XXXXXXXXXXXXXXXXXXXXXXXX GG+ NSGGLT+A + G A G + + +A+R RAMLTPG+SRS+S DEVV KFFGEDA+ AA+ AC GE A SG KG +G + KH R+GSGSSN ANSP R E SEPVETRDVACQWDGSEMGD DEE E +EVELPDTPDC+ALTAVLRLYDHA+LEN+R G LSSRPGWGV+ENIENWDGVYLDTEDRVVALDVDGDPE+RQA+LIGPLPVEL+ MD LEQLTMRRHRFKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FNAGHNIGLXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX QQLWLQD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HPRYR FKILPGNFALGE+VAPN++E+EAA+RRKPS+NAMEHAS A AQS Q K N+ Q S SM P +P S T R+S+ G R EM+ E+ +R+ RNS+ RKLRG+KRIMGKK+TPPTS
Sbjct: 1 MSRFLEYGVFVPDPSSKHGSTQSSQT-ATGQWAQVGGKWCKVGPDGKPLNAPSKSSFSQSSPINMGGGGEGGVDIDGGGSSAAEPFSQTTGAMGDGADWGHRKQEEGDDDDASADLYSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVFNSQGGEXXXXXXXXXXXXXXXXXXXXXXNSGGLTVAVDEAASGTGPAGGIDSMSKTLPIAVEGGSASRPRAMLTPGLSRSYSTDEVVGKFFGEDASAAASDMTAAXXXXXXXXXXXXXXXXXXXACAGERAPSGDKGEAKGGKKAKHARSGSGSSNTANSPVAARAGKKEESEPVETRDVACQWDGSEMGDDDEE-EFVEVELPDTPDCKALTAVLRLYDHARLENKRTGVLSSRPGWGVDENIENWDGVYLDTEDRVVALDVDGDPENRQAVLIGPLPVELAGMDRLEQLTMRRHRFKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRFNAGHNIGLXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXQQLWLQDNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRGHPRYRAFKILPGNFALGERVAPNEKEVEAAARRKPSRNAMEHASGAHAQS-QLKQNRAQXXXXXXXXXXXXXXSASMGP--NGSPTS--------TTGRDSI-GIPRSATAEMTVEETKRSTFGRNSLGRKLRGMKRIMGKKSTPPTS 781 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig8.14523.1 >prot_P-fluviatile_contig8.14523.1 ID=prot_P-fluviatile_contig8.14523.1|Name=mRNA_P-fluviatile_contig8.14523.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=821bp MSRFLEYGVFVPDSGLNRTSTSSTTPPATGQWEKVGGKWVKLGPDGKPMAback to top mRNA from alignment at P-fluviatile_contig8:2252364..2265256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig8.14523.1 ID=mRNA_P-fluviatile_contig8.14523.1|Name=mRNA_P-fluviatile_contig8.14523.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=12893bp|location=Sequence derived from alignment at P-fluviatile_contig8:2252364..2265256+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig8:2252364..2265256+ >mRNA_P-fluviatile_contig8.14523.1 ID=mRNA_P-fluviatile_contig8.14523.1|Name=mRNA_P-fluviatile_contig8.14523.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=4926bp|location=Sequence derived from alignment at P-fluviatile_contig8:2252364..2265256+ (Porterinema fluviatile SAG_2381)back to top |