mRNA_P-fluviatile_contig8.14513.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14513.1
Unique NamemRNA_P-fluviatile_contig8.14513.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2175696..2176181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817242.6412919-CDS-P-fluviatile_contig8:2175695..21758341622817242.6412919-CDS-P-fluviatile_contig8:2175695..2175834Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2175696..2175834 -
1693571644.9711099-CDS-P-fluviatile_contig8:2175695..21758341693571644.9711099-CDS-P-fluviatile_contig8:2175695..2175834Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2175696..2175834 -
1622817242.6534653-CDS-P-fluviatile_contig8:2176059..21761811622817242.6534653-CDS-P-fluviatile_contig8:2176059..2176181Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2176060..2176181 -
1693571644.9804149-CDS-P-fluviatile_contig8:2176059..21761811693571644.9804149-CDS-P-fluviatile_contig8:2176059..2176181Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2176060..2176181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14513.1prot_P-fluviatile_contig8.14513.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2175696..2176181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14513.1

>prot_P-fluviatile_contig8.14513.1 ID=prot_P-fluviatile_contig8.14513.1|Name=mRNA_P-fluviatile_contig8.14513.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=87bp
QGVGGDVGRLWMAEDGGYLCLDLLLERTLQEMAEGLAFVASQLEQRRPRS
ATSGSNPPIDHPSAPYAAPGTEDAAALARKVLPPFVH
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mRNA from alignment at P-fluviatile_contig8:2175696..2176181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14513.1 ID=mRNA_P-fluviatile_contig8.14513.1|Name=mRNA_P-fluviatile_contig8.14513.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=486bp|location=Sequence derived from alignment at P-fluviatile_contig8:2175696..2176181- (Porterinema fluviatile SAG_2381)
CAGGGGGTCGGCGGGGACGTTGGGCGGCTGTGGATGGCGGAAGACGGGGG
ATACCTTTGCTTGGATCTGCTGCTTGAGAGAACGCTGCAGGAGATGGCGG
AAGGACTAGCGTTTGTCGCCAGGTGAACGCCTGTGGTGGTTGGGAGTACT
CCTTTGGTCCTGTTCCCGACATTTCTACCCTGCACGATCGAGGCGCATGG
TCGTTGCCGCACATGAGCCGCCAAAAACGCTACACACGTTACGATCGTTT
GACCATATGCTGATCTCCTGGTCGGCACACATTACGCATATTCCGCTGGT
TTAACGTCATGACTTCCTCTCGTCTGTGAAACCCGAACACAACGAAGCCA
ACTGGAGCAGAGGAGGCCGAGGTCTGCAACGAGTGGGAGCAACCCTCCGA
TTGACCACCCTTCCGCGCCATACGCCGCTCCCGGCACGGAGGATGCCGCT
GCATTAGCGAGGAAAGTCCTACCGCCATTCGTGCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2175696..2176181-

>mRNA_P-fluviatile_contig8.14513.1 ID=mRNA_P-fluviatile_contig8.14513.1|Name=mRNA_P-fluviatile_contig8.14513.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=522bp|location=Sequence derived from alignment at P-fluviatile_contig8:2175696..2176181- (Porterinema fluviatile SAG_2381)
CAGGGGGTCGGCGGGGACGTTGGGCGGCTGTGGATGGCGGAAGACGGGGG
ATACCTTTGCTTGGATCTGCTGCTTGAGAGAACGCTGCAGGAGATGGCGG
AAGGACTAGCGTTTGTCGCCAGCAGGGGGTCGGCGGGGACGTTGGGCGGC
TGTGGATGGCGGAAGACGGGGGATACCTTTGCTTGGATCTGCTGCTTGAG
AGAACGCTGCAGGAGATGGCGGAAGGACTAGCGTTTGTCGCCAGCCAACT
GGAGCAGAGGAGGCCGAGGTCTGCAACGAGTGGGAGCAACCCTCCGATTG
ACCACCCTTCCGCGCCATACGCCGCTCCCGGCACGGAGGATGCCGCTGCA
TTAGCGAGGAAAGTCCTACCGCCATTCGTGCACCCAACTGGAGCAGAGGA
GGCCGAGGTCTGCAACGAGTGGGAGCAACCCTCCGATTGACCACCCTTCC
GCGCCATACGCCGCTCCCGGCACGGAGGATGCCGCTGCATTAGCGAGGAA
AGTCCTACCGCCATTCGTGCAC
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