mRNA_P-fluviatile_contig8.14512.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14512.1
Unique NamemRNA_P-fluviatile_contig8.14512.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14512.1 vs. uniprot
Match: D7G619_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G619_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.190e-12
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = -1 
Query:  121 RRPLLGGGGTSTRENNFASTLEHHRQNVLAVTVPPVRAICAGGFVPETLIRPPGDGGGGKE-----RSSKPHHA 327
            R P  G G        FASTLEHHR+NV+AVTVPP++A+ A GFVPETLIR  G GG G E     R SKP+ A
Sbjct: 1063 RTPAAGAGDN---HEGFASTLEHHRRNVIAVTVPPIQAVGAAGFVPETLIR--GSGGSGVEVNSSKRGSKPYGA 1131
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G619_ECTSI5.190e-1256.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2169521..2169847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.5888054-CDS-P-fluviatile_contig8:2169520..21698471622817218.5888054-CDS-P-fluviatile_contig8:2169520..2169847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2169521..2169847 +
1693571543.9842682-CDS-P-fluviatile_contig8:2169520..21698471693571543.9842682-CDS-P-fluviatile_contig8:2169520..2169847Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2169521..2169847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14512.1prot_P-fluviatile_contig8.14512.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2169521..2169847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14512.1

>prot_P-fluviatile_contig8.14512.1 ID=prot_P-fluviatile_contig8.14512.1|Name=mRNA_P-fluviatile_contig8.14512.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=109bp
PSTTTRCLKTDASISCCRASCELFRGGVHPACSLLLPNRSCMVRLRATFL
AAASITGWSDEGLRNKSAGADGPHRWHGDRKNVLPVVLQCRCKIVFTSGG
PTTPKERSP
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mRNA from alignment at P-fluviatile_contig8:2169521..2169847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14512.1 ID=mRNA_P-fluviatile_contig8.14512.1|Name=mRNA_P-fluviatile_contig8.14512.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=327bp|location=Sequence derived from alignment at P-fluviatile_contig8:2169521..2169847+ (Porterinema fluviatile SAG_2381)
CCCTCGACTACAACTCGCTGTCTGAAAACGGATGCTTCTATTTCCTGCTG
CCGTGCTTCGTGTGAACTATTCCGGGGTGGCGTTCATCCCGCCTGCTCAC
TCCTCCTGCCAAACAGGTCATGCATGGTGCGGCTTCGAGCTACGTTCCTT
GCCGCCGCCTCCATCACCGGGTGGTCTGATGAGGGTCTCAGGAACAAATC
CGCCGGCGCAGATGGCCCGCACCGGTGGCACGGTGACCGCAAGAACGTTT
TGCCGGTGGTGCTCCAATGTCGATGCAAAATTGTTTTCACGAGTGGAGGT
CCCACCACCCCCAAGGAGAGGTCGCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2169521..2169847+

>mRNA_P-fluviatile_contig8.14512.1 ID=mRNA_P-fluviatile_contig8.14512.1|Name=mRNA_P-fluviatile_contig8.14512.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig8:2169521..2169847+ (Porterinema fluviatile SAG_2381)
CCCTCGACTACAACTCGCTGTCTGAAAACGGATGCTTCTATTTCCTGCTG
CCGTGCTTCGTGTGAACTATTCCGGGGTGGCGTTCATCCCGCCTGCTCAC
TCCTCCTGCCAAACAGGTCATGCATGGTGCGGCTTCGAGCTACGTTCCTT
GCCGCCGCCTCCATCACCGGGTGGTCTGATGAGGGTCTCAGGAACAAATC
CGCCGGCGCAGATGGCCCGCACCGGTGGCACGGTGACCGCAAGAACGTTT
TGCCGGTGGTGCTCCAATGTCGATGCAAAATTGTTTTCACGAGTGGAGGT
CCCACCACCCCCAAGGAGAGGTCGCCGCCCTCGACTACAACTCGCTGTCT
GAAAACGGATGCTTCTATTTCCTGCTGCCGTGCTTCGTGTGAACTATTCC
GGGGTGGCGTTCATCCCGCCTGCTCACTCCTCCTGCCAAACAGGTCATGC
ATGGTGCGGCTTCGAGCTACGTTCCTTGCCGCCGCCTCCATCACCGGGTG
GTCTGATGAGGGTCTCAGGAACAAATCCGCCGGCGCAGATGGCCCGCACC
GGTGGCACGGTGACCGCAAGAACGTTTTGCCGGTGGTGCTCCAATGTCGA
TGCAAAATTGTTTTCACGAGTGGAGGTCCCACCACCCCCAAGGAGAGGTC
GCCG
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