mRNA_P-fluviatile_contig8.14496.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14496.1
Unique NamemRNA_P-fluviatile_contig8.14496.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14496.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.470e-7
Identity = 39/84 (46.43%), Postives = 43/84 (51.19%), Query Frame = -3 
Query:    1 MDGSRKRRGDADTTASXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTVQHTMQRPDFRQSVYEPYRMDWDEHAEDLEERDCFK 252
            MDG  KR G AD                         XXXXXX     V H M +P  R+ VYEP R+DWDEHA+DLEERDCFK
Sbjct:    1 MDGHGKRCGSADFAEQRRRKRRSLEMNPLSVMRAMAAXXXXXXXXXTAVAHVMDQPAIRRPVYEPQRLDWDEHADDLEERDCFK 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L386_9PHAE2.470e-746.43DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1992414..1993015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size602
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14496.1prot_P-fluviatile_contig8.14496.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1992571..1992873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.4993935-UTR-P-fluviatile_contig8:1992413..19925701622817218.4993935-UTR-P-fluviatile_contig8:1992413..1992570Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1992414..1992570 +
1693571543.9532764-UTR-P-fluviatile_contig8:1992413..19925701693571543.9532764-UTR-P-fluviatile_contig8:1992413..1992570Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1992414..1992570 +
1622817218.5215085-UTR-P-fluviatile_contig8:1992873..19930151622817218.5215085-UTR-P-fluviatile_contig8:1992873..1993015Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1992874..1993015 +
1693571543.968843-UTR-P-fluviatile_contig8:1992873..19930151693571543.968843-UTR-P-fluviatile_contig8:1992873..1993015Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1992874..1993015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.5113978-CDS-P-fluviatile_contig8:1992570..19928731622817218.5113978-CDS-P-fluviatile_contig8:1992570..1992873Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1992571..1992873 +
1693571543.9610865-CDS-P-fluviatile_contig8:1992570..19928731693571543.9610865-CDS-P-fluviatile_contig8:1992570..1992873Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1992571..1992873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14496.1

>prot_P-fluviatile_contig8.14496.1 ID=prot_P-fluviatile_contig8.14496.1|Name=mRNA_P-fluviatile_contig8.14496.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
MTPSVLVSCLRRFRRLDAVVSASPRRFLLPSMVWEITGKVPVTARRLWRA
TGVDQGLVSGMLCDALTFQTFAFKFSENESGSEKTRRFVFSLSDKKVPKV
*
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mRNA from alignment at P-fluviatile_contig8:1992414..1993015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14496.1 ID=mRNA_P-fluviatile_contig8.14496.1|Name=mRNA_P-fluviatile_contig8.14496.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=602bp|location=Sequence derived from alignment at P-fluviatile_contig8:1992414..1993015+ (Porterinema fluviatile SAG_2381)
CTTGAAACAGTCGCGCTCCTCCAGGTCCTCTGCGTGCTCGTCCCAGTCCA
TGCGGTACGGCTCGTAGACTGACTGCCGAAAGTCGGGGCGCTGCATCGTG
TGCTGAACCGTCCCCGCGGTGGCGGCGACGACTACGACAACCGCCGCCAA
CGCCCGCATGACACCCAGCGTGCTTGTCTCTTGCTTGCGTCGTTTTCGCC
GCCTGGACGCGGTGGTATCCGCATCACCACGGCGTTTCCTACTGCCGTCC
ATGGTCTGGGAGATCACTGGCAAGGTGCCTGTCACCGCTCGTCGGCTGTG
GAGGGCCACAGGGGTGGACCAAGGGCTTGTGTCCGGGATGTTGTGTGATG
CTCTGACTTTTCAGACTTTTGCCTTCAAGTTCTCTGAAAACGAATCAGGG
TCGGAAAAAACTCGACGCTTCGTTTTCAGTCTTTCCGACAAGAAAGTTCC
GAAAGTCTGAAAAGTTCGACATTTTTTCAGAAAGTCCGACATTTGAAGTC
TCGTTAATAATGACCCTACGCGCCTACACCAATTTAGATTTGCGCGAACT
CGGCCATCAATTGTCGGTCACCAGCCGCCGAAGAACTACCCACGAGTTGT
CG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1992414..1993015+

>mRNA_P-fluviatile_contig8.14496.1 ID=mRNA_P-fluviatile_contig8.14496.1|Name=mRNA_P-fluviatile_contig8.14496.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig8:1992414..1993015+ (Porterinema fluviatile SAG_2381)
ATGACACCCAGCGTGCTTGTCTCTTGCTTGCGTCGTTTTCGCCGCCTGGA
CGCGGTGGTATCCGCATCACCACGGCGTTTCCTACTGCCGTCCATGGTCT
GGGAGATCACTGGCAAGGTGCCTGTCACCGCTCGTCGGCTGTGGAGGGCC
ACAGGGGTGGACCAAGGGCTTGTGTCCGGGATGTTGTGTGATGCTCTGAC
TTTTCAGACTTTTGCCTTCAAGTTCTCTGAAAACGAATCAGGGTCGGAAA
AAACTCGACGCTTCGTTTTCAGTCTTTCCGACAAGAAAGTTCCGAAAGTC
TGAATGACACCCAGCGTGCTTGTCTCTTGCTTGCGTCGTTTTCGCCGCCT
GGACGCGGTGGTATCCGCATCACCACGGCGTTTCCTACTGCCGTCCATGG
TCTGGGAGATCACTGGCAAGGTGCCTGTCACCGCTCGTCGGCTGTGGAGG
GCCACAGGGGTGGACCAAGGGCTTGTGTCCGGGATGTTGTGTGATGCTCT
GACTTTTCAGACTTTTGCCTTCAAGTTCTCTGAAAACGAATCAGGGTCGG
AAAAAACTCGACGCTTCGTTTTCAGTCTTTCCGACAAGAAAGTTCCGAAA
GTCTGA
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