mRNA_P-fluviatile_contig8.14494.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14494.1
Unique NamemRNA_P-fluviatile_contig8.14494.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14494.1 vs. uniprot
Match: D8LKS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 9.900e-25
Identity = 102/272 (37.50%), Postives = 131/272 (48.16%), Query Frame = 1 
Query:  910 SWVEASKATATAERTATNIREE----RRNVFGMIRGRSSADLLAHVYAAHSPPSRDASTPLHLRRNRVDGLGGSIAWSVASSFDASPLKGESIPASALSTRDGFGADCLRDDDAGDVDDILATAKAVVSGHGRVAFAAADDAGKDLLGGFSEWLDENRRFLGL---PKETLGNETSTFPFVSIDRKASGSHGPLDVGGPQPTLGYMSHGDNA--HDHRSCRNVDAAGDGRSASIADWSLLELEEELHRVREAIESRVQYLYSKMREAGSAAT 1698
            SW  AS +   ++    N REE     R      R R +ADLL     A S P+RD S P    R+  + L  S+A S  SSF+ASPLKGESIPA ALS R          DD G  DD L    A V    + + + +   G D+   F  WLDE  R+      P    G++        IDR+A+GS        P+    + +HG       H   R  +  G   +ASI DWS  ELEEEL R+R A+ESRV+YL S M++ GS AT
Sbjct:  156 SWDTASVSVPKSQGGGKNSREEDFLGERRSRREGRRRRNADLLVDACTASSSPTRDDSQPFGRERSGGERLWSSLALST-SSFEASPLKGESIPALALSARSDCSTARRLGDDGGAGDDFLLADGAEVPAISKPSSSISVGVGDDVPKPFLAWLDEGPRYSHPDDDPGAAGGHDRLPLFCPDIDRRATGSADVQKSHHPRAPRTFAAHGVGVLRGQHHEDRTHEVIG---AASIEDWSSRELEEELRRIRGAVESRVRYLRSIMQQPGSGAT 423
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BLAST of mRNA_P-fluviatile_contig8.14494.1 vs. uniprot
Match: A0A6H5L2R9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.210e-19
Identity = 83/236 (35.17%), Postives = 111/236 (47.03%), Query Frame = 1 
Query: 1006 RSSADLLAHVYAAHSPPSRDASTPLHLRRNRVDGLGGSIAWSVASSFDASPLKGESIPASALSTRDGFGADCLRDDDAGDVDDILATAKAVVSGHGRVAFAAADDAGKDLLGGFSEWLDENRRFLGL---PKETLGNETSTFPFVSIDRKASGSHGPLDVGGPQPTLGYMSHGDNAHD--HRSCRNVDAAGDGRSASIADWSLLELEEELHRVREAIESRVQYLYSKMREAGSAAT 1698
            R  +DLL   +   S P+R  S P    ++  D L  S+A S ASSF+ASPLKGE+IPA A S R          D  G  DD L    A V    +   + +   G D+   F  WLDE  R+      P    G++        IDR+A+G     +   P+    +   G    +  H   R  +  G   +  I DWS  ELEEEL R+R A+ESRV+YL S M++ GS AT
Sbjct:  490 RRKSDLLVDAWTTSSSPTRHDSQPCGREQSGGDRLWSSLALSTASSFEASPLKGETIPALAHSARSDCSTAHRLGDGDGAGDDFLLADSAEVPAISKPTSSISGGVGDDVPKPFLSWLDEGPRYSRPDDDPGAAEGHDRRPLFSPDIDRRATGRTDVQESHHPRAPRTFAGDGVGVLNGQHHEDRTHEVNG---AVRIEDWSSRELEEELRRIRGAVESRVRYLRSVMQQPGSGAT 722
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKS7_ECTSI9.900e-2537.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2R9_9PHAE1.210e-1935.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1970055..1973602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005380.1
Hectar predicted targeting categoryother localisation
Exons2
Model size2480
Cds size1125
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14494.1prot_P-fluviatile_contig8.14494.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1970631..1972823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.5833223-UTR-P-fluviatile_contig8:1970054..19706301622817240.5833223-UTR-P-fluviatile_contig8:1970054..1970630Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1970055..1970630 +
1693571640.4493663-UTR-P-fluviatile_contig8:1970054..19706301693571640.4493663-UTR-P-fluviatile_contig8:1970054..1970630Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1970055..1970630 +
1622817240.6134634-UTR-P-fluviatile_contig8:1972823..19736021622817240.6134634-UTR-P-fluviatile_contig8:1972823..1973602Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1972824..1973602 +
1693571640.481857-UTR-P-fluviatile_contig8:1972823..19736021693571640.481857-UTR-P-fluviatile_contig8:1972823..1973602Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1972824..1973602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.5935142-CDS-P-fluviatile_contig8:1970630..19717101622817240.5935142-CDS-P-fluviatile_contig8:1970630..1971710Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1970631..1971710 +
1693571640.4617064-CDS-P-fluviatile_contig8:1970630..19717101693571640.4617064-CDS-P-fluviatile_contig8:1970630..1971710Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1970631..1971710 +
1622817240.6029427-CDS-P-fluviatile_contig8:1972778..19728231622817240.6029427-CDS-P-fluviatile_contig8:1972778..1972823Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1972779..1972823 +
1693571640.471925-CDS-P-fluviatile_contig8:1972778..19728231693571640.471925-CDS-P-fluviatile_contig8:1972778..1972823Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1972779..1972823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14494.1

>prot_P-fluviatile_contig8.14494.1 ID=prot_P-fluviatile_contig8.14494.1|Name=mRNA_P-fluviatile_contig8.14494.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=375bp
MSTFVDASKDGQTQRKGVCSGQERGDAGSASSSESQQSGASLKATIGGKT
APATACCKDGDSDSNAAAKSDDVKLDDEAPFVYDDAGGRRGVVKDSRGLK
KPQIEGAGRAASWVEASKATATAERTATNIREERRNVFGMIRGRSSADLL
AHVYAAHSPPSRDASTPLHLRRNRVDGLGGSIAWSVASSFDASPLKGESI
PASALSTRDGFGADCLRDDDAGDVDDILATAKAVVSGHGRVAFAAADDAG
KDLLGGFSEWLDENRRFLGLPKETLGNETSTFPFVSIDRKASGSHGPLDV
GGPQPTLGYMSHGDNAHDHRSCRNVDAAGDGRSASIADWSLLELEEELHR
VREAIESRVQYLYSKMREAGSAAT*
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mRNA from alignment at P-fluviatile_contig8:1970055..1973602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14494.1 ID=mRNA_P-fluviatile_contig8.14494.1|Name=mRNA_P-fluviatile_contig8.14494.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3548bp|location=Sequence derived from alignment at P-fluviatile_contig8:1970055..1973602+ (Porterinema fluviatile SAG_2381)
GAGAAGCAGGAGGGGGAGGAGGAGCGGGAGGGGGACAGGGCCGTGAATGA
AATCAGCTTTCGCGAAGAAAGTAGGGGTGGGACGGTCGACAGTAGTCATA
GCGAACGCCCGGCGGGAAGCACACGGCAGGTCGCGGAGGACCCTATCGAA
CGGCACCCGCCTGAGAGGGCGCATGAAGTCGTGCTTTCTGCTGGAGACAA
CGCAAAGCAACAACTGTTGCCAGAGGGGCAGCAGTCAACGAGGTCGTCGG
ACGCTTTAGAAGGCCGGGCCGATCGCCCTGCTCCGTTTCCTTCGGGAAAG
CAGGCGGCGAGGCTCGCAGGCTGTGGTACGCACTTGACGGACAGCAGCGT
GGTGGAGATTCGGGCCGAAGCATCGCTGGAGAGAAAATTCACCGTTGATG
CCGAGGAAGATCGCTTCACGTACAGTGACGAAGAGGACGAAAGCTTGCCC
ATCTTACCAGAAACGGGTGTGACCGAAAAATCTACCGCACTCTTACTTGT
GCCGAGTGGCGATGGCCCTGCTCCTCATGCTCCTTCTCTTCCTCTGCCTC
CGCCTCCTTGGCCTTCTCCTCAACAGATGTCGACCTTCGTTGACGCATCA
AAGGACGGTCAAACCCAGCGCAAAGGTGTTTGCAGCGGCCAGGAAAGAGG
AGATGCCGGCAGTGCATCATCTAGCGAGTCACAGCAGTCCGGCGCATCTT
TAAAGGCAACTATCGGCGGAAAGACTGCTCCAGCCACCGCCTGCTGCAAA
GATGGTGATAGCGATAGTAATGCTGCAGCGAAATCTGATGACGTCAAGCT
CGATGATGAGGCGCCTTTTGTTTACGACGATGCTGGCGGTAGGAGAGGCG
TCGTCAAGGATAGCAGGGGGCTGAAGAAGCCCCAAATCGAAGGCGCTGGA
CGAGCCGCTTCGTGGGTGGAAGCATCAAAAGCGACAGCCACAGCAGAACG
TACAGCAACAAATATCCGAGAAGAACGGCGGAACGTCTTCGGAATGATCA
GGGGAAGAAGCAGCGCCGATCTTCTCGCTCACGTCTACGCGGCCCACTCG
CCGCCTTCTCGGGACGCCTCCACACCGCTTCACCTCCGAAGAAATCGCGT
CGATGGCCTTGGCGGGAGTATCGCTTGGTCGGTAGCCAGCAGTTTTGACG
CGTCGCCACTGAAAGGAGAATCAATTCCGGCTTCCGCCCTCTCCACGAGG
GACGGTTTCGGTGCCGATTGTCTTCGCGATGATGATGCTGGGGATGTCGA
CGATATTCTCGCGACTGCCAAAGCGGTGGTCAGCGGCCACGGGAGGGTCG
CTTTCGCTGCCGCTGATGATGCAGGAAAAGATTTGCTCGGGGGATTCTCG
GAATGGCTGGACGAAAATCGGCGATTTCTCGGCCTGCCGAAGGAAACATT
GGGAAATGAGACATCCACTTTCCCCTTCGTCAGCATCGACCGGAAAGCAA
GCGGGAGTCATGGCCCCCTAGACGTTGGTGGACCGCAACCGACGCTAGGA
TACATGTCTCACGGCGACAATGCTCACGACCACCGCTCCTGCCGCAATGT
AGATGCGGCGGGCGATGGGAGATCAGCGAGTATTGCCGACTGGAGTTTGC
TCGAGCTGGAAGAGGAGCTTCACCGGGTGCGGGAAGCGATAGAGAGCCGT
GTGCAGGTGAGTACACGTGCTTAGCGGGCTCGGGTGAGTCCGTGGATCTG
AATCGTGATGGGTATGAACTGACAAGGAGCCCATCATGCGGTATTCGGGT
GGCAAATCGACTTTGGATGAAAGCGGCAGCACGAAGTTGAAGAGTTCAAC
TCTCCGACGATATCTGAGAGTTCGGGCGTAATGGCTTTCAGCGGCTTTGA
CAGGGTATCAAGAGCCGGTGAGTAGCCGGCGGCCGTTGCAAGCACGTTGG
TGAATTGGTCAGGAGGTTCGACTACCAAAATGTGATGCAGCACAGTGATA
CCGTACCAGGCGATGAATGCCGTCCTTCACCGCTCCTTCACCGTACAGAT
TGTGAACTGCGTTTGTGTCTCCTGCGTACGCCGGCGATCGAAGTCCGTGT
CCAATAATTGGCGGGAGAATAGTTGGGTGCTGGCTCGGTGAAATCTCGCG
TGTCTAGAGCTTTGAGTAACAAAGTCTCATCGCGGAGAGCTATTATCCGC
TCTGTTTGTGTCCCAGCACCCTGGCTCTCATTTTTTCTCGTTTCTGCATT
CTCGAGAGCGGGGATTGCGCGCTGGCCGTGGCCCGTTCGCGGTGTTCGTC
AAATATAAGGGGCGGAGCGTCGTGGATGTCAATGTTCGTTCTTACCCCCC
GTGCCCCCTTGATATTATATATCTTTGCGATACGATCAGGAGAGAGAAGG
GTACATGGTTGAGCTGGAGAAAGTAGACAGTCGGTATAGAGAGAAGTTTA
GGGCATGGAACAAAGAGGAGAAGACGGTGGCGGTACTCGGGTGTAAGATG
TGGCCCAGGAAGGACAGGTATAAAGTAGACAAGTTAGGGAAAACATTTTT
GAGCCACCGTTGGCAAAGTAAGAAGGAACGATTGGCCATCGGTGATCGAT
CCTGCGGGAACAATGCCCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTA
ACAACAAAGGCATGCAAAACATGAGTACGcccccCCCCCCGTCCCCCCTT
GAGATGAAGCCGCCAGGTTGCTGCTCCGTTGTGAAAACCTCCTCGTACCG
ATTGTCCTCCCTCCGCCCCTGCAGTATCTATACTCCAAAATGCGCGAAGC
CGGATCTGCAGCCACGTGATTGCTCCCGACGCCCGTGGCATGGTAACGCA
GCCGCTGGTCAGCCCGGATGGCTGATTCGCTGCGATTTCGCAGCAGAAGG
AGCCGCAGACTTGTTCTAAGTGATCGCCAGTTTTCGAACCGAGGAATCCT
CCCGTGCTTATCGTCATCTCGTTCATCAGTTTCTCTCGGAAGGCCGCGGA
ATAAGCTTGGCCATTATACGAAGTGGTGTCTCCATTTTTGTGAAGTTTTG
GCCACCCTTCACAAACTTGCACGTATTGCTTCATCCAATGGACTCGGAAC
ACCTGCGGAATAAGCTTGGCCATGATACGAAGTGGTGTCTCCATTTTTGT
TAAGTTTTGGCCACCCTTCACAAACTTGCAGGTATTGCTTCATCCAATGG
ACTCGGAACACCTGTGGGTGCGCATATATTCTTTTTACGGTTTTGAGGTG
TTGGGGTGTGTAAACTTGCGATCAAATACTTGCATGTGGTGACGCTTTTG
CAGCTGTTGCCTGAATTTCAGACCCTTCCACGTGGAAATGAAACAATGGC
CGAAGCACGACGTTGCTGGAGAAGAGCAACGTGGACGCCCCAAGAAGTCG
ATATTCCCATGGCAAGTCGCGGGTGACGTTCCAGTTCGCTTTACTGGGAC
GTGTGTGCGAAAACTCTCGCATCTGGACTGCTTTGTAATTGGTATCAATC
GTGATTGTAAATAGGGGAGGGCGTTTCAGAAGCTTCAAATGAACAGCCGC
CTGCATGGTCAAGACAGATTTGCAGGTAGATGAGATATGGAGAAGCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1970055..1973602+

>mRNA_P-fluviatile_contig8.14494.1 ID=mRNA_P-fluviatile_contig8.14494.1|Name=mRNA_P-fluviatile_contig8.14494.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2250bp|location=Sequence derived from alignment at P-fluviatile_contig8:1970055..1973602+ (Porterinema fluviatile SAG_2381)
ATGTCGACCTTCGTTGACGCATCAAAGGACGGTCAAACCCAGCGCAAAGG
TGTTTGCAGCGGCCAGGAAAGAGGAGATGCCGGCAGTGCATCATCTAGCG
AGTCACAGCAGTCCGGCGCATCTTTAAAGGCAACTATCGGCGGAAAGACT
GCTCCAGCCACCGCCTGCTGCAAAGATGGTGATAGCGATAGTAATGCTGC
AGCGAAATCTGATGACGTCAAGCTCGATGATGAGGCGCCTTTTGTTTACG
ACGATGCTGGCGGTAGGAGAGGCGTCGTCAAGGATAGCAGGGGGCTGAAG
AAGCCCCAAATCGAAGGCGCTGGACGAGCCGCTTCGTGGGTGGAAGCATC
AAAAGCGACAGCCACAGCAGAACGTACAGCAACAAATATCCGAGAAGAAC
GGCGGAACGTCTTCGGAATGATCAGGGGAAGAAGCAGCGCCGATCTTCTC
GCTCACGTCTACGCGGCCCACTCGCCGCCTTCTCGGGACGCCTCCACACC
GCTTCACCTCCGAAGAAATCGCGTCGATGGCCTTGGCGGGAGTATCGCTT
GGTCGGTAGCCAGCAGTTTTGACGCGTCGCCACTGAAAGGAGAATCAATT
CCGGCTTCCGCCCTCTCCACGAGGGACGGTTTCGGTGCCGATTGTCTTCG
CGATGATGATGCTGGGGATGTCGACGATATTCTCGCGACTGCCAAAGCGG
TGGTCAGCGGCCACGGGAGGGTCGCTTTCGCTGCCGCTGATGATGCAGGA
AAAGATTTGCTCGGGGGATTCTCGGAATGGCTGGACGAAAATCGGCGATT
TCTCGGCCTGCCGAAGGAAACATTGGGAAATGAGACATCCACTTTCCCCT
TCGTCAGCATCGACCGGAAAGCAAGCGGGAGTCATGGCCCCCTAGACGTT
GGTGGACCGCAACCGACGCTAGGATACATGTCTCACGGCGACAATGCTCA
CGACCACCGCTCCTGCCGCAATGTAGATGCGGCGGGCGATGGGAGATCAG
CGAGTATTGCCGACTGGAGTTTGCTCGAGCTGGAAGAGGAGCTTCACCGG
GTGCGGGAAGCGATAGAGAGCCGTGTGCAGATGTCGACCTTCGTTGACGC
ATCAAAGGACGGTCAAACCCAGCGCAAAGGTGTTTGCAGCGGCCAGGAAA
GAGGAGATGCCGGCAGTGCATCATCTAGCGAGTCACAGCAGTCCGGCGCA
TCTTTAAAGGCAACTATCGGCGGAAAGACTGCTCCAGCCACCGCCTGCTG
CAAAGATGGTGATAGCGATAGTAATGCTGCAGCGAAATCTGATGACGTCA
AGCTCGATGATGAGGCGCCTTTTGTTTACGACGATGCTGGCGGTAGGAGA
GGCGTCGTCAAGGATAGCAGGGGGCTGAAGAAGCCCCAAATCGAAGGCGC
TGGACGAGCCGCTTCGTGGGTGGAAGCATCAAAAGCGACAGCCACAGCAG
AACGTACAGCAACAAATATCCGAGAAGAACGGCGGAACGTCTTCGGAATG
ATCAGGGGAAGAAGCAGCGCCGATCTTCTCGCTCACGTCTACGCGGCCCA
CTCGCCGCCTTCTCGGGACGCCTCCACACCGCTTCACCTCCGAAGAAATC
GCGTCGATGGCCTTGGCGGGAGTATCGCTTGGTCGGTAGCCAGCAGTTTT
GACGCGTCGCCACTGAAAGGAGAATCAATTCCGGCTTCCGCCCTCTCCAC
GAGGGACGGTTTCGGTGCCGATTGTCTTCGCGATGATGATGCTGGGGATG
TCGACGATATTCTCGCGACTGCCAAAGCGGTGGTCAGCGGCCACGGGAGG
GTCGCTTTCGCTGCCGCTGATGATGCAGGAAAAGATTTGCTCGGGGGATT
CTCGGAATGGCTGGACGAAAATCGGCGATTTCTCGGCCTGCCGAAGGAAA
CATTGGGAAATGAGACATCCACTTTCCCCTTCGTCAGCATCGACCGGAAA
GCAAGCGGGAGTCATGGCCCCCTAGACGTTGGTGGACCGCAACCGACGCT
AGGATACATGTCTCACGGCGACAATGCTCACGACCACCGCTCCTGCCGCA
ATGTAGATGCGGCGGGCGATGGGAGATCAGCGAGTATTGCCGACTGGAGT
TTGCTCGAGCTGGAAGAGGAGCTTCACCGGGTGCGGGAAGCGATAGAGAG
CCGTGTGCAGTATCTATACTCCAAAATGCGCGAAGCCGGATCTGCAGCCA
CGTGATATCTATACTCCAAAATGCGCGAAGCCGGATCTGCAGCCACGTGA
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