mRNA_P-fluviatile_contig8.14490.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14490.1
Unique NamemRNA_P-fluviatile_contig8.14490.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: D7G659_ECTSI (NADAR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G659_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 1.430e-87
Identity = 134/175 (76.57%), Postives = 147/175 (84.00%), Query Frame = 1
Query:  553 FDKGSVRKTEGMVLFWKEPACFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLRSEANVEVAGEE 1077
            FD   VR TEGMVLFWKEPACFVQWTPC+FE+DG  YCNAEQWMMA KA LF D    +QIMAT DP RQKALGR+VRGFDPA+WD  GY+VVVRGNL KF+QN  FRDELLATGDRILAEASPYD EWGIGLHA D DAL+Q++WPG+NKLGEALMDVRS+LR+EA  E   EE
Sbjct:   48 FDDSCVRTTEGMVLFWKEPACFVQWTPCSFELDGERYCNAEQWMMASKARLFNDRTALQQIMATADPRRQKALGRQVRGFDPAMWDKKGYDVVVRGNLAKFKQNPGFRDELLATGDRILAEASPYDSEWGIGLHANDADALIQARWPGRNKLGEALMDVRSQLRNEAYDEDQKEE 222          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: A0A6H5L2E7_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E7_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 2.690e-87
Identity = 133/170 (78.24%), Postives = 143/170 (84.12%), Query Frame = 1
Query:  544 GGSFDKGSVRKTEGMVLFWKEPACFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLRSEA 1053
            G  FD   VR TEGMVLFWKEPACFVQWTPC+FE+DG  YCNAEQWMMA KA LF D    +QIMAT DP RQKALGR+VRGFDPAVWD  GY+VVVRGNL KFRQN  FRDELLATGDRILAEASPYD EWGIGL A D DAL+Q++WPG+NKLGEALMDVRS+LR EA
Sbjct:   44 GFGFDDDCVRTTEGMVLFWKEPACFVQWTPCSFELDGERYCNAEQWMMASKARLFNDRTALQQIMATADPRRQKALGRQVRGFDPAVWDKTGYDVVVRGNLAKFRQNPGFRDELLATGDRILAEASPYDSEWGIGLKANDADALIQARWPGRNKLGEALMDVRSQLRDEA 213          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: UPI001CCB45E4 (NADAR family protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCB45E4)

HSP 1 Score: 178 bits (452), Expect = 4.800e-49
Identity = 93/168 (55.36%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  553 FDKGSVRKTEGMVLFWKEPACFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLRSEAN 1056
            FD   V +TE MVLFW+ P  F QWT   F VDGVTY  AEQ+MMA+KA LFGD     +I+AT  P + KALGR V GF  AVW+    E+VVRGN  KF Q+   R  LLATGD++L EASP D  WG+GL A D      S+W GKN LGEALM VR++LR+ A+
Sbjct:    6 FDGSQVIETETMVLFWQPPGVFGQWTSSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILATDSPRQHKALGREVAGFVQAVWERECLEIVVRGNRAKFGQDPDLRAALLATGDKLLVEASPLDRIWGVGLRADDPRIHDTSRWRGKNLLGEALMRVRAELRAAAD 173          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: A0A1I2I2Z7_9DELT (NADAR domain-containing protein n=2 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2I2Z7_9DELT)

HSP 1 Score: 173 bits (438), Expect = 5.330e-47
Identity = 90/163 (55.21%), Postives = 105/163 (64.42%), Query Frame = 1
Query:  553 FDKGSVRKTEGMVLFWKEPACFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKL 1041
            FD   V +TE MVLFW+ PA F QWTP  F VDGVTY  AEQ+MMA+KA LFGD     +I+A   P   KALGR+V GF   VWD     +VVRGN  KF QN   R  LLATG ++L EASP D  WG+GL A D      ++W GKN LGEALM VR++L
Sbjct:    6 FDGSQVFETETMVLFWQPPAVFGQWTPSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILAADSPRTHKALGRQVAGFSQDVWDRECLGIVVRGNRAKFAQNPDMRAALLATGGKLLVEASPLDRLWGVGLRADDPRIHDPNQWRGKNLLGEALMRVRAEL 168          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: A0A1R1ES34_9BACL (NADAR domain-containing protein n=13 Tax=Paenibacillus TaxID=44249 RepID=A0A1R1ES34_9BACL)

HSP 1 Score: 171 bits (434), Expect = 2.400e-46
Identity = 91/176 (51.70%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  550 SFDKGSVRKTEGMVLFW-KEPA--------CFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLRSE 1050
            +F KGS  K    V FW  +PA        CF QW    F VDGV Y +AE +MMA+KA LFGD ++  QI+A   P + K LGR+VRGFDPAVWD  GY +VVRGN  KF QN   +  LL TG R+L EASP D  WG+GL A D+  L    W GKN LG ALM+VR +L++E
Sbjct:   10 AFRKGSKLK---YVFFWGHQPAADGSITKSCFSQWWEAKFTVDGVEYASAEHYMMAEKARLFGDEEIREQILAARHPKQAKDLGRKVRGFDPAVWDREGYSIVVRGNEAKFSQNDDLKQFLLGTGQRVLVEASPVDSIWGVGLAADDEAVLNPLLWRGKNLLGFALMEVRDRLQAE 182          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: A0A0B0I090_9BACL (Swarming motility protein YbiA n=2 Tax=Paenibacillus TaxID=44249 RepID=A0A0B0I090_9BACL)

HSP 1 Score: 169 bits (427), Expect = 3.150e-45
Identity = 91/177 (51.41%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  553 FDKGSVRKTEGMVLFW-KEPA--------CFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLRSEAN 1056
            F KG   K    V FW  +PA        CF QW PC F  DGVTY +AE +MMA KA LFGD +M   I+A   P + K LGR+VRGFDP VWD  GY +VVRGNL KF QN      LL TG R+L EASP D  WG+GL A D+       W G N LG ALM+VR +LR++A+
Sbjct:   11 FQKGRKLK---YVFFWGHQPAADGSITKSCFSQWWPCRFTEDGVTYTSAEHYMMAGKARLFGDEEMLEHILAAKHPKQAKDLGRKVRGFDPKVWDEEGYRIVVRGNLAKFSQNEELGRFLLGTGTRVLVEASPVDRIWGVGLAADDERIENPLLWQGNNLLGFALMEVRDRLRADAD 184          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: A0A2I2KQ41_9ACTN (NADAR domain-containing protein n=1 Tax=Frankia canadensis TaxID=1836972 RepID=A0A2I2KQ41_9ACTN)

HSP 1 Score: 168 bits (425), Expect = 7.750e-45
Identity = 85/146 (58.22%), Postives = 94/146 (64.38%), Query Frame = 1
Query:  610 ACFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLRS 1047
            +C  QW    F VD   Y  AE +MMA KA LFGD      I+A  DPGR KALGRRVRGFD A+W+   YE+VV GNL KF QN   R  LLATGD +L EASP D  WGIGL AGD  A   + WPG N LG ALMDVR+ LRS
Sbjct:   56 SCLSQWLASAFTVDKRRYATAEHFMMAGKARLFGDDDALETILAAPDPGRAKALGRRVRGFDEAIWERHRYEIVVAGNLAKFAQNDRLRGFLLATGDDVLVEASPLDAVWGIGLSAGDPRATRPADWPGLNLLGFALMDVRAMLRS 201          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: UPI0015517745 (NADAR family protein n=1 Tax=Prevotella sp. PINT TaxID=2736291 RepID=UPI0015517745)

HSP 1 Score: 166 bits (420), Expect = 2.090e-44
Identity = 81/145 (55.86%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  610 ACFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLR 1044
            ACF QW PC F VDG  Y + EQ+MMA+KA L GD+++  QI+AT DP   K LGR V+ FD  +WD    +VVV GNL KF QN   RD LL+TGD++L EASPYD  WGIGL A + DA     W G+N LG ALM+VR  LR
Sbjct:   31 ACFSQWYPCKFGVDGQMYSSTEQYMMAEKARLMGDNEVREQILATDDPREIKKLGRVVKDFDARLWDMEKSQVVVNGNLHKFGQNPELRDFLLSTGDKVLVEASPYDKIWGIGLDANNPDACAPKLWKGENLLGFALMEVRGLLR 175          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: A0A4S1ZE27_9BACT (NADAR family protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A4S1ZE27_9BACT)

HSP 1 Score: 165 bits (417), Expect = 4.350e-44
Identity = 81/145 (55.86%), Postives = 97/145 (66.90%), Query Frame = 1
Query:  610 ACFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLR 1044
            ACF QW PC FEVDG  Y + EQ+MM++KA L GD++   +I+AT DP   K LGR VR FD  +WD    +VVV GNL KF QN   RD LL+TGD++L EASPYD  WGIGL A + DA     W G+N LG ALM+VR  LR
Sbjct:   25 ACFSQWYPCKFEVDGQMYSSTEQYMMSEKARLMGDTETRERILATDDPREIKKLGRMVRDFDARLWDMKKSQVVVNGNLHKFGQNPKLRDFLLSTGDKVLVEASPYDKIWGIGLEAKNPDACDPRLWKGENLLGFALMEVRELLR 169          
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Match: UPI0005250E90 (NADAR family protein n=1 Tax=Actinomadura flavalba TaxID=1120938 RepID=UPI0005250E90)

HSP 1 Score: 164 bits (416), Expect = 7.980e-44
Identity = 84/149 (56.38%), Postives = 94/149 (63.09%), Query Frame = 1
Query:  607 PACFVQWTPCTFEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRGFDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEWGIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLRSEA 1053
            P C  QW P  F VDGV Y  AE +MMA+KA LFGD+     I+A   P R K LGRRVRG+D AVWD   Y+VVVR NL KF Q+   R  L  TGDR+L EASP D  WGIGL A D  A   + WPG+N LG ALMDVR  LR  A
Sbjct:   33 PWCLSQWWPAAFAVDGVRYATAEHFMMAEKARLFGDAATRAAILAAPHPARAKDLGRRVRGYDDAVWDEHRYDVVVRANLAKFGQDEDLRRYLCETGDRVLVEASPVDRVWGIGLTADDARATRPADWPGRNLLGFALMDVRDHLRRAA 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G659_ECTSI1.430e-8776.57NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L2E7_9PHAE2.690e-8778.24NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI001CCB45E44.800e-4955.36NADAR family protein n=1 Tax=Nannocystis pusilla T... [more]
A0A1I2I2Z7_9DELT5.330e-4755.21NADAR domain-containing protein n=2 Tax=Nannocysti... [more]
A0A1R1ES34_9BACL2.400e-4651.70NADAR domain-containing protein n=13 Tax=Paenibaci... [more]
A0A0B0I090_9BACL3.150e-4551.41Swarming motility protein YbiA n=2 Tax=Paenibacill... [more]
A0A2I2KQ41_9ACTN7.750e-4558.22NADAR domain-containing protein n=1 Tax=Frankia ca... [more]
UPI00155177452.090e-4455.86NADAR family protein n=1 Tax=Prevotella sp. PINT T... [more]
A0A4S1ZE27_9BACT4.350e-4455.86NADAR family protein n=1 Tax=Bacteroidales bacteri... [more]
UPI0005250E907.980e-4456.38NADAR family protein n=1 Tax=Actinomadura flavalba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1937240..1942084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.6
Seed ortholog evalue1.8e-74
Seed eggNOG ortholog2880.D7G659
KEGG koko:K09935
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs2S4FY@2759,COG3236@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved hypothetical protein CHP02464
Ec32 orthologEc-11_005280.1
Exons5
Model size1933
Cds size1176
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.2989035-UTR-P-fluviatile_contig8:1937239..19372781622817240.2989035-UTR-P-fluviatile_contig8:1937239..1937278Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1937240..1937278 +
1693571640.2399766-UTR-P-fluviatile_contig8:1937239..19372781693571640.2399766-UTR-P-fluviatile_contig8:1937239..1937278Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1937240..1937278 +
1622817240.3719754-UTR-P-fluviatile_contig8:1941366..19420841622817240.3719754-UTR-P-fluviatile_contig8:1941366..1942084Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1941367..1942084 +
1693571640.307625-UTR-P-fluviatile_contig8:1941366..19420841693571640.307625-UTR-P-fluviatile_contig8:1941366..1942084Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1941367..1942084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.3110003-CDS-P-fluviatile_contig8:1937278..19378931622817240.3110003-CDS-P-fluviatile_contig8:1937278..1937893Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1937279..1937893 +
1693571640.2532158-CDS-P-fluviatile_contig8:1937278..19378931693571640.2532158-CDS-P-fluviatile_contig8:1937278..1937893Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1937279..1937893 +
1622817240.3231468-CDS-P-fluviatile_contig8:1938977..19390391622817240.3231468-CDS-P-fluviatile_contig8:1938977..1939039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1938978..1939039 +
1693571640.2686167-CDS-P-fluviatile_contig8:1938977..19390391693571640.2686167-CDS-P-fluviatile_contig8:1938977..1939039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1938978..1939039 +
1622817240.334561-CDS-P-fluviatile_contig8:1939916..19401031622817240.334561-CDS-P-fluviatile_contig8:1939916..1940103Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1939917..1940103 +
1693571640.2782671-CDS-P-fluviatile_contig8:1939916..19401031693571640.2782671-CDS-P-fluviatile_contig8:1939916..1940103Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1939917..1940103 +
1622817240.3449743-CDS-P-fluviatile_contig8:1940486..19405691622817240.3449743-CDS-P-fluviatile_contig8:1940486..1940569Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1940487..1940569 +
1693571640.286718-CDS-P-fluviatile_contig8:1940486..19405691693571640.286718-CDS-P-fluviatile_contig8:1940486..1940569Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1940487..1940569 +
1622817240.3606122-CDS-P-fluviatile_contig8:1941137..19413661622817240.3606122-CDS-P-fluviatile_contig8:1941137..1941366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1941138..1941366 +
1693571640.2957473-CDS-P-fluviatile_contig8:1941137..19413661693571640.2957473-CDS-P-fluviatile_contig8:1941137..1941366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1941138..1941366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14490.1prot_P-fluviatile_contig8.14490.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1937279..1941366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14490.1

>prot_P-fluviatile_contig8.14490.1 ID=prot_P-fluviatile_contig8.14490.1|Name=mRNA_P-fluviatile_contig8.14490.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=392bp
MNDDRGSGDRIISVEPQPRLQPASSLVMSPLPAAAAAHNGRGDTHDNIFH
DDRDSGAQNGKGIPKSRQSGSSFATPAAASAHTPRGSSGGGGECRGRGGR
LKSSGRRGSRRKAESKTGGEVHGLLHAEPDPRGPFDYNAKGARGRRCSGD
GSRRGRARTRGGSGSGCGGGSFDKGSVRKTEGMVLFWKEPACFVQWTPCT
FEVDGVTYCNAEQWMMAKKAELFGDSKMHRQIMATTDPGRQKALGRRVRG
FDPAVWDTVGYEVVVRGNLEKFRQNSHFRDELLATGDRILAEASPYDCEW
GIGLHAGDDDALVQSKWPGKNKLGEALMDVRSKLRSEANVEVAGEEEEEE
EEGYGGVGPSGGGGGSGRAGRAERSGQRSAVDWTAVDADDC*
back to top

mRNA from alignment at P-fluviatile_contig8:1937240..1942084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14490.1 ID=mRNA_P-fluviatile_contig8.14490.1|Name=mRNA_P-fluviatile_contig8.14490.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4845bp|location=Sequence derived from alignment at P-fluviatile_contig8:1937240..1942084+ (Porterinema fluviatile SAG_2381)
GAGAACAACCCCGGCAAGGAGGACACCTTTCGCACTGTCATGAACGATGA TCGAGGCAGCGGCGATCGCATCATAAGTGTTGAACCACAACCTCGGCTGC AGCCGGCATCTTCTCTTGTAATGTCACCACTACCAGCAGCAGCAGCAGCG CACAACGGGCGCGGGGACACGCACGACAATATATTTCACGACGACAGGGA CTCCGGCGCTCAAAATGGCAAGGGTATTCCAAAATCGCGGCAATCGGGAT CTTCATTTGCCACGCCAGCTGCAGCATCAGCACATACCCCTCGCGGCAGC AGCGGGGGTGGGGGTGAGTGCAGAGGAAGGGGCGGTAGGTTAAAATCCTC CGGAAGACGAGGTAGCAGGAGAAAAGCCGAAAGCAAGACCGGGGGTGAGG TGCATGGCCTTCTGCATGCCGAGCCGGACCCGCGGGGACCTTTCGATTAC AACGCCAAAGGAGCGAGAGGACGGCGGTGTAGTGGCGACGGGAGCAGAAG GGGCAGGGCTCGGACGAGGGGGGGCAGCGGCAGCGGCTGCGGCGGCGGCA GCTTCGACAAGGGTTCCGTGCGGAAAACAGAGGGGATGGTGCTGTTCTGG AAAGAGCCGGCGTGCTTCGTGCAATGGACGCCCTGCACTTTTGAGGTCGA CGGAGTGAGTGCGAAAACTTTGCTTGGTTAGGGTTGCCAATGCTTGTCGC TTATCCTGTGTCTCAATGAAGGGGGAGAGGGGGGGTGTACTCATAGTCGT GCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGA CGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTCACACCACCAAGCGCG AAGCGCCGTGAGGTTTTCGGCGAGTCGCATGAAGGGTGCGCTGCATCCTG CTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTTGCACACGGATGACAGC TGCGTATGGGTTAATTTATTTTCTGGTGCTTTCACTTCCAGAGACAGTTG TAAGCACTATGTAACTGCCTCGAGGGTGCTTGACCATTTTAACACAACGT GGTGCGATCATCCCCTTGCACGGAGTGAGGGTTCTCCACTCCGCACAACA TGATCTTCTCGACCACCATTATGGTTACCGCCAAAAAAACCAGAGGAAAA AAAGACGGTAACCTGGTTGCCGAGTTCACGAAGTGAATTGGCTTGTTTTA CAACGTCGTTGCCACGCGACGAAACCCAATCCCGATGGCAAACACCGAGA TGAGAGCCATCGGTAGAGGGGGATAAGGGGGGGGGGGCTTGCAAACGAAG TAAATCGTGGCCCAGGGGAGGTTTTTGCTGCTGCGACTGGGTGCTCAGCT TGCTTAGTGTTTTTTTTTTTCAGCCCTTTCCTGTGCTGTGATGCAGATAT TCGCTACCCCCCCCCGCCTCTGCTCTTGCGCTTCCATGAAGATTGTCCAT GGGGTGTCCGCCGCCGTTAGTGGTGGTGGCCGTGGTGGAGTGCGCACGGC TTGCTCAACTACCGCCGTGAAATTGTGGTCGACGCAGCGTTCAGAACGAA TTTATCCAAAGCTCCTCCGTGTCGTGTCAAGTCACCTGGCAGTGTACGCT GGCTGCTACTTTTGGTGTTTCATCCGCGCTGAGATAGATGTACACAAGCG TCGTCGCCGAGCTTTGGGGATACGTTGTTTTCTTTTTTTTCCCTGCCCTG TTCTCTTTCCTCTGCTACACCTGCTTTGGCCATGGCAGGTGACATACTGC AACGCGGAGCAATGGATGATGGCGAAGAAGGCGGAATTGTTCGGAGACAG GTGATAGATGTGTACCTCATTCCCTTGTCTGATGCCCGATGCACTTGGTC TAATATGTTTTTTTCATGTTTTTGCATGGATCGTCTCCTTCACACCTCCA ATGCCCGCCCCTCCGGTTTTAGATGCTTGTTTTGTTCTTTTTGCTGAGCC CTCCCCCCCCTCCCTTGTGTCTCTCTCACGCTGTGTGTCTGCGGTGATGG TTTTCGTTCAGCCGCGAACGCACCCTCGATCGAGGTTCAGCCCACACCAG CCGCGTCTGTTACGCAGTCAAGCAGCATGTTTGCGGTGGTCAGTCCTGTC GATGTTAGACCGGCTGCAGTGATGAAGTGCCACGATTCCCGCTATTTTCC ATCCATGTCGTCCGCTGGCGTGGGAAAGGGACGGGGCGGGAGGAGCGGGA GAACGCTCGAACACTTGACTGACAAGACTTCCCGTATTACTCTTCCCTGG GGTAGTTAGCAGCCACTGCCACATGAGGTGGTATTCTTAACGCGATTTGC CTCTGTTGTTTTGATCCGACCGGCCCCGTCGATCGTTTTGGACTTATGTA CGGCGGGAGCGGCCAGGCGAGCGGGGTTGAGTGGATGCAGCGATGTGTGT ACCAAGGGAGGTCACGTCTTTCAACAAGTCTTGGACGACCAACGCCGGCG TTATGTTGAGCCATTTCAAGACATAGAGCCGAGCGCCTCCCCGCCCATTC CTAGTGTCTACTCGATCGATCAACCGCCGCGTTTTCGGTCGCCTCTTCCC TAATGTGTTTGGCATTGGTTGTCTGCCACCACGGTCGCGAACCGGCCACG ACTCCCGACTCTCGTCACCCCTTTCTCTCTGACGCTCTCTCTCGCTCTCT CTGTCGCGCTCGCTCTCCCGCTCTCAGTAAGATGCATCGGCAGATAATGG CCACGACCGACCCGGGTCGGCAGAAGGCCTTGGGCCGCAGGGTCAGGGGG TTCGACCCGGCCGTGTGGGACACGGTGGGCTACGAGGTGGTGGTGAGGGG CAACCTGGAGAAGTTCAGGCAAAACTCGCACTTCCGCGACGAGTTGCTGG CCACGGGGGACAGGGTGCGTGACTTGTGCTCGCTTCGAATCGTGCGCCCT CTTACGAGTTTGAGCGTGGTAGGCCGCCCGCGGGATGCTTGTGCTTTCGA GTGAGCAAAACCTCGACTGACATCGTCCGATCTTGTATTTGTATTCGACG TGGGCAGGGGTCAATGCTGTTCTTGAATTGTTGTCTTCCACATTCGTTTC CGTCGTCGCCGTCGCCGTCGTGGCCAACGCCGTCGCCACCATCGGCAAGG CGTGTAATGCGCGTCACACTTGATCCGCGCCTCTGTCTCCCCTTGCCCCC CCCTTCCTTTCCGTCTTGCTCACGCGAACAAAAAACGCAAAACAACGGGG GCGCCGCGAACGAACGACGGTTGACTGACTCACTCGCCCGGCGCCAGATC TTGGCGGAGGCAAGCCCGTACGACTGCGAGTGGGGCATTGGCCTCCACGC GGGCGACGACGACGCACTCGTGCAGTCAAAGTGCGTGCTCTCGAATGTGG CTCCCGTTTGTTCATCTGTTTGTCGTGTCGGCGCTCTCTTTATTCTGATT CGTTTGTGGAATTTCTGCGCGAATCCGAGGTAGGTCGGCGGACGGGGGTC GCTCCTCCGCGCGGGCGGGGAAAGCTTTGTGGGTGGCTGTAGGTGTGTCC ATTGTCAGATGTGTAGCGCCCCTGATAACTCAATTGTGTGTGGAGATTCT GTGTCATGGTGCCGACCACTTGTAGCAGGGTGCCGCGCTATCCTACGCGC GACGTGCCGACAACCTCGCGACAGCCCCCCGGCCCCCTAAcccccccCCC CCTCCCCCGACCTTTTGAGATGAATATTCCGGAAGACGTGCTTCATCCAA GCAACGCTTACAAGGGGGCGCAAGGTCTAGGGCCTCATGACTACGCAGAC ATGATGGCAAGAACCCGCCCCGCTTTCCTTCACCTTCTCTCTGGCATTTG CACTCATGCGCTGCTTGCATGACGCTGTACGTAAGTACACACCCATGCAC ACATGCGCACCTTCGGAACTTGTGTTACTCATTTTATTCGAAAAAAAGAT GGCCGGGTAAGAACAAGCTCGGGGAGGCGCTCATGGACGTGCGCTCTAAG CTACGGTCCGAAGCAAACGTGGAGGTGGCGGGCGAGGAGGAGGAGGAAGA GGAGGAGGGATATGGCGGGGTAGGTCCCAGTGGCGGCGGCGGCGGCAGCG GTAGGGCCGGGAGGGCCGAACGTTCTGGGCAGCGCTCGGCGGTCGACTGG ACGGCGGTTGACGCAGACGATTGTTGATGTAATTGGCAGCCGTTCACGGG GCAGGGCAGCTCGTAAAGCACGTGACCCTTTTTTTCTGTACAGCAATCTG GCGGAGGGAGAGATAGTTGGTGTTCCAGGCCCGGTGCCGATGCGATCGAG AGTACCTTGCCTTGGGCAAGGCTTATATACGCGGTTGACTCCACGCCGCG TAAGAAATACATTGTGTAATTAATACGGAGTGTATATAAATACAGGGGTG GCGGTTGTGGCATCGGCGATGGGGAGGGGAAACCCTGAGCGCCGTTTCTT CGTTCTCGTCACCCCCCTTCCCTGAAATATGGACTCTGGAGGCGAGAGTC GCGCCTCGCGGTTTCCGTATAGGTTTTATGTGCCCTTATTTTCGGGATGT TCGGTCCTTTGAGAGACTGCGCTCGTGAGGCTTCAAGAAAAGGCGTTGTA TGGAATGTCGAGGGGTGTGCAGACGTGTGTACGTGTCTTTTGCGTCTGCT GCTTCCTCCCCTTGTTTCGAACCGTGGCTCATAAAGTGTTTGTGTGGATG CTTGAATGATTGCTCGGTACGCTGGAGTATGCGCGTGTGCTTTGGTCGCT CAAGAAACGTAGATCCAGATGTCAACAGTCGTCGCAAATGTTAAGAGGTC GCAAAAACTGTGCCTTGACGGGCATTGTCGTAAATATTCAGTGTTGTTTT CTCCCCGGCCTTTCAGTCCAAGATTCTGTCAGCTGCGACCGACAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:1937240..1942084+

>mRNA_P-fluviatile_contig8.14490.1 ID=mRNA_P-fluviatile_contig8.14490.1|Name=mRNA_P-fluviatile_contig8.14490.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2352bp|location=Sequence derived from alignment at P-fluviatile_contig8:1937240..1942084+ (Porterinema fluviatile SAG_2381)
ATGAACGATGATCGAGGCAGCGGCGATCGCATCATAAGTGTTGAACCACA
ACCTCGGCTGCAGCCGGCATCTTCTCTTGTAATGTCACCACTACCAGCAG
CAGCAGCAGCGCACAACGGGCGCGGGGACACGCACGACAATATATTTCAC
GACGACAGGGACTCCGGCGCTCAAAATGGCAAGGGTATTCCAAAATCGCG
GCAATCGGGATCTTCATTTGCCACGCCAGCTGCAGCATCAGCACATACCC
CTCGCGGCAGCAGCGGGGGTGGGGGTGAGTGCAGAGGAAGGGGCGGTAGG
TTAAAATCCTCCGGAAGACGAGGTAGCAGGAGAAAAGCCGAAAGCAAGAC
CGGGGGTGAGGTGCATGGCCTTCTGCATGCCGAGCCGGACCCGCGGGGAC
CTTTCGATTACAACGCCAAAGGAGCGAGAGGACGGCGGTGTAGTGGCGAC
GGGAGCAGAAGGGGCAGGGCTCGGACGAGGGGGGGCAGCGGCAGCGGCTG
CGGCGGCGGCAGCTTCGACAAGGGTTCCGTGCGGAAAACAGAGGGGATGG
TGCTGTTCTGGAAAGAGCCGGCGTGCTTCGTGCAATGGACGCCCTGCACT
TTTGAGGTCGACGGAATGAACGATGATCGAGGCAGCGGCGATCGCATCAT
AAGTGTTGAACCACAACCTCGGCTGCAGCCGGCATCTTCTCTTGTAATGT
CACCACTACCAGCAGCAGCAGCAGCGCACAACGGGCGCGGGGACACGCAC
GACAATATATTTCACGACGACAGGGACTCCGGCGCTCAAAATGGCAAGGG
TATTCCAAAATCGCGGCAATCGGGATCTTCATTTGCCACGCCAGCTGCAG
CATCAGCACATACCCCTCGCGGCAGCAGCGGGGGTGGGGGTGAGTGCAGA
GGAAGGGGCGGTAGGTTAAAATCCTCCGGAAGACGAGGTAGCAGGAGAAA
AGCCGAAAGCAAGACCGGGGGTGAGGTGCATGGCCTTCTGCATGCCGAGC
CGGACCCGCGGGGACCTTTCGATTACAACGCCAAAGGAGCGAGAGGACGG
CGGTGTAGTGGCGACGGGAGCAGAAGGGGCAGGGCTCGGACGAGGGGGGG
CAGCGGCAGCGGCTGCGGCGGCGGCAGCTTCGACAAGGGTTCCGTGCGGA
AAACAGAGGGGATGGTGCTGTTCTGGAAAGAGCCGGCGTGCTTCGTGCAA
TGGACGCCCTGCACTTTTGAGGTCGACGGAGTGACATACTGCAACGCGGA
GCAATGGATGATGGCGAAGAAGGCGGAATTGTTCGGAGACAGGTGACATA
CTGCAACGCGGAGCAATGGATGATGGCGAAGAAGGCGGAATTGTTCGGAG
ACAGTAAGATGCATCGGCAGATAATGGCCACGACCGACCCGGGTCGGCAG
AAGGCCTTGGGCCGCAGGGTCAGGGGGTTCGACCCGGCCGTGTGGGACAC
GGTGGGCTACGAGGTGGTGGTGAGGGGCAACCTGGAGAAGTTCAGGCAAA
ACTCGCACTTCCGCGACGAGTTGCTGGCCACGGGGGACAGGTAAGATGCA
TCGGCAGATAATGGCCACGACCGACCCGGGTCGGCAGAAGGCCTTGGGCC
GCAGGGTCAGGGGGTTCGACCCGGCCGTGTGGGACACGGTGGGCTACGAG
GTGGTGGTGAGGGGCAACCTGGAGAAGTTCAGGCAAAACTCGCACTTCCG
CGACGAGTTGCTGGCCACGGGGGACAGGATCTTGGCGGAGGCAAGCCCGT
ACGACTGCGAGTGGGGCATTGGCCTCCACGCGGGCGACGACGACGCACTC
GTGCAGTCAAAATCTTGGCGGAGGCAAGCCCGTACGACTGCGAGTGGGGC
ATTGGCCTCCACGCGGGCGACGACGACGCACTCGTGCAGTCAAAATGGCC
GGGTAAGAACAAGCTCGGGGAGGCGCTCATGGACGTGCGCTCTAAGCTAC
GGTCCGAAGCAAACGTGGAGGTGGCGGGCGAGGAGGAGGAGGAAGAGGAG
GAGGGATATGGCGGGGTAGGTCCCAGTGGCGGCGGCGGCGGCAGCGGTAG
GGCCGGGAGGGCCGAACGTTCTGGGCAGCGCTCGGCGGTCGACTGGACGG
CGGTTGACGCAGACGATTGTTGAATGGCCGGGTAAGAACAAGCTCGGGGA
GGCGCTCATGGACGTGCGCTCTAAGCTACGGTCCGAAGCAAACGTGGAGG
TGGCGGGCGAGGAGGAGGAGGAAGAGGAGGAGGGATATGGCGGGGTAGGT
CCCAGTGGCGGCGGCGGCGGCAGCGGTAGGGCCGGGAGGGCCGAACGTTC
TGGGCAGCGCTCGGCGGTCGACTGGACGGCGGTTGACGCAGACGATTGTT
GA
back to top