mRNA_P-fluviatile_contig8.14489.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14489.1
Unique NamemRNA_P-fluviatile_contig8.14489.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14489.1 vs. uniprot
Match: A0A6H5L1L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L5_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 1.100e-82
Identity = 134/185 (72.43%), Postives = 158/185 (85.41%), Query Frame = 1 
Query:  226 TQLDAEESAEIFSEQPTGDLPTAEEMQDRKDATSSAENLLPADKIQNGLRNARMIFATGWASVAATYRDLERTETAERIKQNTVTMMDASMDGLSKVGCKISETAEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDVTGRALAELQRPGGSNAGGXXXXXXXXXXXXXXXXDDGPHIV 780
            T L AEE+A++F+EQPTG++P+AEEM+DRKDATSS++NLLP DK++NGLR+A+MIFATGWASVAATYRDLERTETAE+IK+ TV ++D SMDGLSKVGCKISET EKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKD+T +A+AE+++PGGSN G                 DDGPH V
Sbjct:   55 TPLTAEETADVFNEQPTGEVPSAEEMEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEIKKPGGSNGGSGPAAGRSGEGG-----DDGPHTV 234
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BLAST of mRNA_P-fluviatile_contig8.14489.1 vs. uniprot
Match: D7G658_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G658_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 4.510e-71
Identity = 118/160 (73.75%), Postives = 135/160 (84.38%), Query Frame = 1 
Query:  301 MQDRKDATSSAENLLPADKIQNGLRNARMIFATGWASVAATYRDLERTETAERIKQNTVTMMDASMDGLSKVGCKISETAEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDVTGRALAELQRPGGSNAGGXXXXXXXXXXXXXXXXDDGPHIV 780
            M+DRKDATSS++NLLP DK++NGLR+A+MIFATGWASVAATYRDLERTETAE+IK+ TV ++D SMDGLSKVGCKISET EKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKD+T +A+AE+++PGGSN G                 DDGPH V
Sbjct:    1 MEDRKDATSSSDNLLPTDKLENGLRHAKMIFATGWASVAATYRDLERTETAEKIKEGTVNLVDRSMDGLSKVGCKISETTEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFAAAKDMTDKAMAEMKKPGGSNGGAGPAAGGSGEGG-----DDGPHTV 155
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BLAST of mRNA_P-fluviatile_contig8.14489.1 vs. uniprot
Match: A0A835ZI10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI10_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.360e-13
Identity = 35/108 (32.41%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:  307 DRKDATSSAENLLPADKIQNGLRNARMIFATGWASVAATYRDLERTETAERIKQNTVTMMDASMDGLSKVGCKISETAEKGVQVVGAKMEEAAPTLGRWRDEVVIASE 630
            D     +SA+N++P +++QNGLR A+ ++  GW  V  T++ +E +E   R+K+    +++ +  GLS+VG  +    +KG+Q  G + EEA P L  ++D  V+ ++
Sbjct:   24 DEDQPRTSAQNVIPTEQLQNGLRTAKSLWLVGWNGVKDTWKTVESSEQVARLKEAAAPVVERAATGLSEVGQTVGAATQKGMQWTGERFEEAKPHLVEFKDRAVVVTK 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1L5_9PHAE1.100e-8272.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G658_ECTSI4.510e-7173.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZI10_9STRA3.360e-1332.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1924255..1927794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005270.1
Exons4
Model size1372
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14489.1prot_P-fluviatile_contig8.14489.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1924297..1927205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.2146487-UTR-P-fluviatile_contig8:1924254..19242961622817240.2146487-UTR-P-fluviatile_contig8:1924254..1924296Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1924255..1924296 +
1693571640.1724215-UTR-P-fluviatile_contig8:1924254..19242961693571640.1724215-UTR-P-fluviatile_contig8:1924254..1924296Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1924255..1924296 +
1622817240.2692804-UTR-P-fluviatile_contig8:1927205..19277941622817240.2692804-UTR-P-fluviatile_contig8:1927205..1927794Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1927206..1927794 +
1693571640.2235103-UTR-P-fluviatile_contig8:1927205..19277941693571640.2235103-UTR-P-fluviatile_contig8:1927205..1927794Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1927206..1927794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.2274568-CDS-P-fluviatile_contig8:1924296..19246321622817240.2274568-CDS-P-fluviatile_contig8:1924296..1924632Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1924297..1924632 +
1693571640.1829338-CDS-P-fluviatile_contig8:1924296..19246321693571640.1829338-CDS-P-fluviatile_contig8:1924296..1924632Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1924297..1924632 +
1622817240.239539-CDS-P-fluviatile_contig8:1925713..19258481622817240.239539-CDS-P-fluviatile_contig8:1925713..1925848Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1925714..1925848 +
1693571640.194849-CDS-P-fluviatile_contig8:1925713..19258481693571640.194849-CDS-P-fluviatile_contig8:1925713..1925848Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1925714..1925848 +
1622817240.249773-CDS-P-fluviatile_contig8:1926232..19263731622817240.249773-CDS-P-fluviatile_contig8:1926232..1926373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1926233..1926373 +
1693571640.203582-CDS-P-fluviatile_contig8:1926232..19263731693571640.203582-CDS-P-fluviatile_contig8:1926232..1926373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1926233..1926373 +
1622817240.259597-CDS-P-fluviatile_contig8:1927076..19272051622817240.259597-CDS-P-fluviatile_contig8:1927076..1927205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1927077..1927205 +
1693571640.2128732-CDS-P-fluviatile_contig8:1927076..19272051693571640.2128732-CDS-P-fluviatile_contig8:1927076..1927205Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1927077..1927205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14489.1

>prot_P-fluviatile_contig8.14489.1 ID=prot_P-fluviatile_contig8.14489.1|Name=mRNA_P-fluviatile_contig8.14489.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=247bp
MSSFESTALSTNTMKNTAGDEAQAEPTTANSKRGGTPAAGAAAALAASAA
AGPVDEENNVSTQLDAEESAEIFSEQPTGDLPTAEEMQDRKDATSSAENL
LPADKIQNGLRNARMIFATGWASVAATYRDLERTETAERIKQNTVTMMDA
SMDGLSKVGCKISETAEKGVQVVGAKMEEAAPTLGRWRDEVVIASERGFA
AAKDVTGRALAELQRPGGSNAGGGRGGGGGAAGGSASGPDDGPHIV*
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mRNA from alignment at P-fluviatile_contig8:1924255..1927794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14489.1 ID=mRNA_P-fluviatile_contig8.14489.1|Name=mRNA_P-fluviatile_contig8.14489.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3540bp|location=Sequence derived from alignment at P-fluviatile_contig8:1924255..1927794+ (Porterinema fluviatile SAG_2381)
CCGCTCTTTAGGCTTGTAGTTGTTTCCCTATTTGTCCTACTAATGTCCAG
CTTCGAGAGCACTGCTTTGTCCACCAATACCATGAAAAACACGGCTGGCG
ATGAAGCTCAAGCGGAGCCGACGACAGCAAACTCGAAGCGCGGAGGGACT
CCAGCGGCAGGGGCAGCGGCAGCTTTAGCAGCATCAGCAGCAGCTGGACC
TGTAGATGAGGAGAACAACGTCAGCACACAGCTCGACGCGGAGGAGTCGG
CCGAGATCTTCAGCGAGCAGCCGACGGGTGACCTGCCCACCGCCGAGGAA
ATGCAGGACAGGAAAGACGCCACCTCCAGCGCCGAAAATCTCCTGCCTGC
CGACAAAATTCAAAACGGGCTCAGGAACGTGAGGGATACCCCCGGTGTGC
CGCCCCTCGCTCTCTTTATATTTGAAGGAAATAGCAGCGATGTGGGCGCC
GGTGCAGGTGCATTAAGCGGGATTTTAATGTTCCAACAGTTGGAGAATTT
ATCAAAAAATGGCCGTGTGCACACGGACACTCACCGGGAAGACGGAAGCG
AGCCAAAAGCCTGAGTTTATGCACGGCACACTCGGTTTGGCCGCGTGCCA
TTCGGACTCTCCCCAGTGGTGATGCCAAACTCTTCACCCCCGTCGGATTT
GGAATGCCACGACCGAAATAGCACATGCGTGCGCCCACACGCACGCCGAC
AATATGCAATACGGATGAACCATGGTCTACTCTCTCGATTCAAGCTCAGC
GTCCATTTGTGTCTCCCTACGCACGTCTTGAAATGAAAGTTTGCATCCAG
AGGGGATCGTTCGGCACACACTCGGCGTCATGCACACCAGGTTTACCCTA
GGCGGAATACTCGTGGAAAGCGGGAAACAAGTCTGGATTCTTCCCTCGTC
CTCCAACAGTGTGCACTTTTATTTACGCTGTTGCAATTGGTCGACGATTC
GCGTGTGTCGCAGCCTCGACATGTTGAGTTGTTTGACTGAACAAGGCAGT
CCTCGACCTGCAGGCACACGGGACTGACTTCGCCTTCAAATATCTGCTTC
ACAACCGCATCCCCATCGGATAATCGCCTGCCAATCGATAAATGTCACGA
TGCATCCTCTGTCCAATGCCTCGAGCACGCAGTGGCAATGCCCCACATGA
CTGGGAAGCATGAATGGAATTGCTCGGTTGCCAGAATGTTGTTGACATTT
TTTGTCGCTCTTCCTACCCATCTCCCCTTCGCTGGCGCATGCTGCGACAG
GCCTGTCTGCTCCTCTCAGGGCGAATCTGAGGGACGCGCGAAATTGTCGA
CGTATCTCACGCTAAATAAAGTCTGTGTATGAAACCGATTTCCTGCAAAA
AACTATCGTGACTCCTCCCCGCCACCCCTGCCATCCCCCCCACCCCCCTC
GCCCTCTCTCCTCACTGCGATATCCGCACCTTGAAATGCCGGGCACGCTC
GCGCTCAAGGCAAGGATGATCTTTGCTACGGGATGGGCGAGCGTTGCGGC
GACGTACCGGGATCTGGAGAGGACGGAGACGGCGGAGAGGATCAAGCAAA
ACACGGTCACGATGATGGACGCCTCCATGGACGGCCTCAGCAAGGTGAGC
AGCGCAACGCTTCCGCAGCCAGCGGGCAAACAACGGCACACTCGGGCGGT
CAGCGCCCTACCTTTTTTTCAAGCTGGGAGCGCGGAGGAAGCTGGAAATG
TCATCCTTGTGTCCAGTACAGTGCGTGATTGCCTTACGCAAGTCGCTGCC
GATTCGCCCATTCAATCCAGCCGAGTGGTTGAGTCATAATGCTGTGATGG
ACCCGACCTTACGCGAGTGCCGTGGGCCTTTGACCTGTTCCACGAATGCC
GAATGTCATCGCTACTTCCGCGTTATTGCCGGCTCACAAGATTCATTCCG
TGCGTCGCGTGTGGTTCTCGGTGTGTGCGTTACATTCATCTTATTAATTT
CCCATGTTTCCTACTTCAACCGCAAAAGGTGGGGTGCAAGATATCGGAGA
CCGCGGAAAAGGGAGTCCAGGTGGTGGGCGCGAAGATGGAGGAGGCTGCC
CCTACCCTCGGAAGGTGGCGAGACGAGGTGGTAATCGCGAGCGAGAGGGG
CTTTGCGGCTGCCAAAGATGTGAGTGTCTGCTACCCCTACCACCCCCCAT
GCAGCTCATCCTTCATGCGACTCGCCGAATCTATAACGGCGGTCCACGCT
TGGTGAGTGCGAGCCTGACTGGCGCAAACCCGGCTTCGCTCCGACCTGGT
TTTGGAGGTATGCGAGGCCATCGGTCTTGCGACTGCGGCGTGTATTGACT
TTTAGTAGCGCCCGCGCGTTCCCGGTATTTCTCCGCGATGAGTATGCGTG
CTCGACGGGGGAGTCACGTTGAGGGGAGCGGTAGACGCATACCTTATCCT
CCGGTCAAACTCGGTACCCCCTTCGCGGTCTAGCGATTAAGCATTTCGAG
CACGCCCTCTTTTTTTATTCAGATCCTCACCACCTGTGGTGACCCCCTTC
GTCTCTCGCCCCCTCAATCACTCGATCGCCGCTTCGAGCGGCTCGGCGCC
CGCCGCTGCCCCGAGACCCCTCGAAAGCCTTTCTCTAACAAAAATGGCTC
ATCCTACCCGCTGCCCCGTCCGCTCACCTCACCTCGCCTCGCTACGCCAC
ACCGCATCATGCATGCCACCTCTGACCTACTCCCCCCGAAAAACGCAGCT
GCGCTCCCGGCCATTTTTCTTTTTTGTGGTTAACAAGGCTTGTGTGCGCT
TGTTTTCTCTCGGCTCATATCCAATGAACACGATCCCACCGATAGATTGC
CCGTCGCCCCGCTCCCTCGCAGGTGACGGGCAGGGCCTTAGCTGAGCTTC
AAAGGCCAGGGGGCAGCAACGCAGGTGGCGGTCGCGGTGGCGGTGGGGGG
GCCGCGGGTGGGTCGGCCAGCGGCCCCGACGACGGGCCGCACATCGTTTA
AAAAAAACAAATATTCCAAAGCTGCTGTTGTATGTCATGCACCTATTTTG
GTAGCCTTCCCTCCTCATGGTGATGATCGTCAAAAGCTCGCTCGTTTGAA
TCTCAGCCGAGATCTCCGATCGAGAAGATGTCCGAGATGTCTGTTGCGTC
TCCGAGTTGTAGTGTGTGACAGTCCGGGTTATTGGTTTTGTGCTATGGGT
CAGGTGTAATACGGAGAGCATTCTCCTTCATCAGGAGGAACTGCGATGCC
CTGGGAGACAACCGTCACCCGCCACGCTCGTAGCTTTGTGAACGGTCTGA
CTGTTTCCATACAAACTTTTGTTGTAGTGGCGGTGCTTGATGATCCTGAT
AGGGCAGAAGAGAGGGCCTCCAGATGGTCAAGTTCTCTTGATCTACCGCC
TGCTCAAAGGCTGTGTCTGATTGGTTGGTGGAATTGCCGAAATTTACCCT
TAAGAGACAACGACAGGAGTCACTTGTCTGTATGATTGCCATGACTCTTG
TCCCCCGTCATGGGGTTGGTGATAGACTAGATTGATCATACACAACCGTC
TTGATTAGAGAGTGACAGACAAAGCAGACATGAACGCTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1924255..1927794+

>mRNA_P-fluviatile_contig8.14489.1 ID=mRNA_P-fluviatile_contig8.14489.1|Name=mRNA_P-fluviatile_contig8.14489.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1482bp|location=Sequence derived from alignment at P-fluviatile_contig8:1924255..1927794+ (Porterinema fluviatile SAG_2381)
ATGTCCAGCTTCGAGAGCACTGCTTTGTCCACCAATACCATGAAAAACAC
GGCTGGCGATGAAGCTCAAGCGGAGCCGACGACAGCAAACTCGAAGCGCG
GAGGGACTCCAGCGGCAGGGGCAGCGGCAGCTTTAGCAGCATCAGCAGCA
GCTGGACCTGTAGATGAGGAGAACAACGTCAGCACACAGCTCGACGCGGA
GGAGTCGGCCGAGATCTTCAGCGAGCAGCCGACGGGTGACCTGCCCACCG
CCGAGGAAATGCAGGACAGGAAAGACGCCACCTCCAGCGCCGAAAATCTC
CTGCCTGCCGACAAAATTCAAAACGGGCTCAGGAACATGTCCAGCTTCGA
GAGCACTGCTTTGTCCACCAATACCATGAAAAACACGGCTGGCGATGAAG
CTCAAGCGGAGCCGACGACAGCAAACTCGAAGCGCGGAGGGACTCCAGCG
GCAGGGGCAGCGGCAGCTTTAGCAGCATCAGCAGCAGCTGGACCTGTAGA
TGAGGAGAACAACGTCAGCACACAGCTCGACGCGGAGGAGTCGGCCGAGA
TCTTCAGCGAGCAGCCGACGGGTGACCTGCCCACCGCCGAGGAAATGCAG
GACAGGAAAGACGCCACCTCCAGCGCCGAAAATCTCCTGCCTGCCGACAA
AATTCAAAACGGGCTCAGGAACGCAAGGATGATCTTTGCTACGGGATGGG
CGAGCGTTGCGGCGACGTACCGGGATCTGGAGAGGACGGAGACGGCGGAG
AGGATCAAGCAAAACACGGTCACGATGATGGACGCCTCCATGGACGGCCT
CAGCAAGGCAAGGATGATCTTTGCTACGGGATGGGCGAGCGTTGCGGCGA
CGTACCGGGATCTGGAGAGGACGGAGACGGCGGAGAGGATCAAGCAAAAC
ACGGTCACGATGATGGACGCCTCCATGGACGGCCTCAGCAAGGTGGGGTG
CAAGATATCGGAGACCGCGGAAAAGGGAGTCCAGGTGGTGGGCGCGAAGA
TGGAGGAGGCTGCCCCTACCCTCGGAAGGTGGCGAGACGAGGTGGTAATC
GCGAGCGAGAGGGGCTTTGCGGCTGCCAAAGATGTGGGGTGCAAGATATC
GGAGACCGCGGAAAAGGGAGTCCAGGTGGTGGGCGCGAAGATGGAGGAGG
CTGCCCCTACCCTCGGAAGGTGGCGAGACGAGGTGGTAATCGCGAGCGAG
AGGGGCTTTGCGGCTGCCAAAGATGTGACGGGCAGGGCCTTAGCTGAGCT
TCAAAGGCCAGGGGGCAGCAACGCAGGTGGCGGTCGCGGTGGCGGTGGGG
GGGCCGCGGGTGGGTCGGCCAGCGGCCCCGACGACGGGCCGCACATCGTT
TAAGTGACGGGCAGGGCCTTAGCTGAGCTTCAAAGGCCAGGGGGCAGCAA
CGCAGGTGGCGGTCGCGGTGGCGGTGGGGGGGCCGCGGGTGGGTCGGCCA
GCGGCCCCGACGACGGGCCGCACATCGTTTAA
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