mRNA_P-fluviatile_contig8.14464.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14464.1
Unique NamemRNA_P-fluviatile_contig8.14464.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14464.1 vs. uniprot
Match: D7G648_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G648_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 6.500e-14
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 FLMKGQGSVVRPLKDRLRKLCKQRRIRLQEFFKPFDVHNNKKA 129
             +MKG   +VRPLKD+LR LCKQRRIRLQEFFKP+DVH+NKK 
Sbjct:   15 IMMKGHDGMVRPLKDKLRTLCKQRRIRLQEFFKPYDVHHNKKV 57
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BLAST of mRNA_P-fluviatile_contig8.14464.1 vs. uniprot
Match: D7FS98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS98_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 7.470e-6
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 FLMKGQGSVVRPLKDRLRKLCKQRRIRLQEFFKPFDVHNNKKA 129
            F +KG  S ++P+KD++R   K+RR+RL+EFF+PFDV   KK 
Sbjct:   43 FTIKGSESQLKPVKDKVRAAVKKRRLRLEEFFQPFDVTRTKKV 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G648_ECTSI6.500e-1474.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FS98_ECTSI7.470e-651.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1664541..1664669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size130
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817237.0757587-CDS-P-fluviatile_contig8:1664540..16646631622817237.0757587-CDS-P-fluviatile_contig8:1664540..1664663Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1664541..1664663 -
1693571626.4237578-CDS-P-fluviatile_contig8:1664540..16646631693571626.4237578-CDS-P-fluviatile_contig8:1664540..1664663Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1664541..1664663 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817237.0865781-UTR-P-fluviatile_contig8:1664663..16646691622817237.0865781-UTR-P-fluviatile_contig8:1664663..1664669Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1664664..1664669 -
1693571626.4343421-UTR-P-fluviatile_contig8:1664663..16646691693571626.4343421-UTR-P-fluviatile_contig8:1664663..1664669Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1664664..1664669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14464.1prot_P-fluviatile_contig8.14464.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1664541..1664663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14464.1

>prot_P-fluviatile_contig8.14464.1 ID=prot_P-fluviatile_contig8.14464.1|Name=mRNA_P-fluviatile_contig8.14464.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=41bp
MKGQGSVVRPLKDRLRKLCKQRRIRLQEFFKPFDVHNNKKA
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mRNA from alignment at P-fluviatile_contig8:1664541..1664669-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14464.1 ID=mRNA_P-fluviatile_contig8.14464.1|Name=mRNA_P-fluviatile_contig8.14464.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=129bp|location=Sequence derived from alignment at P-fluviatile_contig8:1664541..1664669- (Porterinema fluviatile SAG_2381)
TTCTTGATGAAGGGCCAAGGAAGCGTAGTGAGGCCGCTGAAGGACAGGCT
ACGAAAGCTTTGCAAGCAGCGGCGGATTCGGCTGCAGGAATTTTTCAAGC
CATTCGACGTGCACAACAACAAGAAGGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1664541..1664669-

>mRNA_P-fluviatile_contig8.14464.1 ID=mRNA_P-fluviatile_contig8.14464.1|Name=mRNA_P-fluviatile_contig8.14464.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=246bp|location=Sequence derived from alignment at P-fluviatile_contig8:1664541..1664669- (Porterinema fluviatile SAG_2381)
ATGAAGGGCCAAGGAAGCGTAGTGAGGCCGCTGAAGGACAGGCTACGAAA
GCTTTGCAAGCAGCGGCGGATTCGGCTGCAGGAATTTTTCAAGCCATTCG
ACGTGCACAACAACAAGAAGGCAATGAAGGGCCAAGGAAGCGTAGTGAGG
CCGCTGAAGGACAGGCTACGAAAGCTTTGCAAGCAGCGGCGGATTCGGCT
GCAGGAATTTTTCAAGCCATTCGACGTGCACAACAACAAGAAGGCA
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