mRNA_P-fluviatile_contig8.14447.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14447.1
Unique NamemRNA_P-fluviatile_contig8.14447.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14447.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.180e-22
Identity = 69/131 (52.67%), Postives = 81/131 (61.83%), Query Frame = -3 
Query:   93 RPFGGVSYVKLTAPVSVPLQLDLDRFCTEFTGNAPTEDLGKVVDSLEILGSP--------FSSLASAPSGTSIGGAPGRRDKSTPGVGARRGNHKAHPDGVSVDLSLREGWSSGTAA-ARTSEGGDGSDVV 458
            R +GGVSYVKL +PVSVPL+LDL+RFC+ +TGNAP EDLGK VDSL+ LG P        F+SL +A  GT +  A   R    P  G   G  K   DGVSVDL  REGWSS ++  A   EGG G  V 
Sbjct:  981 RSYGGVSYVKLASPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSLDGLGIPRVPRSPSAFASLRAA--GTGLCAA--NRSGPNPAGG---GGEKRPTDGVSVDLFAREGWSSTSSGQAGVGEGGGGGSVA 1104
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BLAST of mRNA_P-fluviatile_contig8.14447.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.130e-18
Identity = 63/129 (48.84%), Postives = 78/129 (60.47%), Query Frame = -3 
Query:  105 RPFGGVSYVKLTAPVSVPLQLDLDRFCTEFTGNAPTEDLGKVVDSLEILG---------SPFSSLASAPSG--TSIGGAPGRRDKSTPGVGARRGNHKAHPDGVSVDLSLREGWSSGTAAARTSEGGDG 458
            R +GGVSYVKL++PVSVPL+LDL+RFC+ +TGNAP EDLGK VDSL+ LG         S F+SL +A +G   +I  AP  +                  D VSVDL  REGWSS   ++ TS G DG
Sbjct:  882 RSYGGVSYVKLSSPVSVPLELDLERFCSGYTGNAPAEDLGKQVDSLDGLGILPRAPRSPSAFASLRAAGTGLCAAIRAAP--KSAXXXXXXXXXXXXXRASDDVSVDLFAREGWSS--TSSLTSSGRDG 1006
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUE2_9PHAE1.180e-2252.67USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2P5_ECTSI3.130e-1848.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1526686..1527256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size498
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.3410068-CDS-P-fluviatile_contig8:1526685..15271831622817218.3410068-CDS-P-fluviatile_contig8:1526685..1527183Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1526686..1527183 +
1693571543.8801484-CDS-P-fluviatile_contig8:1526685..15271831693571543.8801484-CDS-P-fluviatile_contig8:1526685..1527183Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1526686..1527183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.3513832-UTR-P-fluviatile_contig8:1527183..15272561622817218.3513832-UTR-P-fluviatile_contig8:1527183..1527256Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1527184..1527256 +
1693571543.8917475-UTR-P-fluviatile_contig8:1527183..15272561693571543.8917475-UTR-P-fluviatile_contig8:1527183..1527256Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1527184..1527256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14447.1prot_P-fluviatile_contig8.14447.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1526686..1527183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14447.1

>prot_P-fluviatile_contig8.14447.1 ID=prot_P-fluviatile_contig8.14447.1|Name=mRNA_P-fluviatile_contig8.14447.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=166bp
MPPIAPPPTPSSSPSRTTGNGDGNRKGVSLSTTSLPSPPSLVRAAAVPED
QPSRKDRSTDTPSGCALWLPLLAPTPGVLLSRRPGAPPILVPEGAEAKEE
KGEPSISRESTTFPRSSVGALPVNSVQNRSRSSCNGTETGAVSFTYDTPP
KGRLPPPPPPLWLLP*
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mRNA from alignment at P-fluviatile_contig8:1526686..1527256+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14447.1 ID=mRNA_P-fluviatile_contig8.14447.1|Name=mRNA_P-fluviatile_contig8.14447.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=571bp|location=Sequence derived from alignment at P-fluviatile_contig8:1526686..1527256+ (Porterinema fluviatile SAG_2381)
ATGCCGCCGATCGCCCCTCCCCCGACGCCGTCTTCCTCGCCTTCCCGCAC
CACGGGCAACGGCGATGGGAACCGGAAAGGGGTCTCGTTGTCTACCACGT
CGCTACCGTCGCCGCCTTCGCTCGTTCGAGCCGCCGCCGTGCCCGAAGAC
CAGCCTTCCCGCAAAGACAGGTCCACCGATACCCCATCGGGGTGCGCCTT
GTGGTTGCCCCTCCTAGCGCCGACACCCGGTGTGCTCTTGTCGCGGCGGC
CGGGCGCACCCCCGATACTTGTCCCGGAGGGGGCCGAAGCTAAGGAGGAG
AAGGGGGAGCCCAGTATTTCGAGGGAGTCTACCACCTTTCCGAGGTCCTC
CGTAGGGGCGTTGCCCGTGAATTCCGTACAGAACCGATCAAGATCCAGCT
GCAACGGCACTGAAACCGGCGCAGTCAGCTTCACGTACGACACACCGCCG
AAGGGGCGACTACCGCCGCCGCCGCCGCCGCTTTGGCTGCTTCCGTAGGT
ACTCTCTCCCCCGACAAGGATGGCTGCCGGCGGAGTGGTAACACCTCCTC
CATCAGGAGCGCCCCTCCCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1526686..1527256+

>mRNA_P-fluviatile_contig8.14447.1 ID=mRNA_P-fluviatile_contig8.14447.1|Name=mRNA_P-fluviatile_contig8.14447.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=996bp|location=Sequence derived from alignment at P-fluviatile_contig8:1526686..1527256+ (Porterinema fluviatile SAG_2381)
ATGCCGCCGATCGCCCCTCCCCCGACGCCGTCTTCCTCGCCTTCCCGCAC
CACGGGCAACGGCGATGGGAACCGGAAAGGGGTCTCGTTGTCTACCACGT
CGCTACCGTCGCCGCCTTCGCTCGTTCGAGCCGCCGCCGTGCCCGAAGAC
CAGCCTTCCCGCAAAGACAGGTCCACCGATACCCCATCGGGGTGCGCCTT
GTGGTTGCCCCTCCTAGCGCCGACACCCGGTGTGCTCTTGTCGCGGCGGC
CGGGCGCACCCCCGATACTTGTCCCGGAGGGGGCCGAAGCTAAGGAGGAG
AAGGGGGAGCCCAGTATTTCGAGGGAGTCTACCACCTTTCCGAGGTCCTC
CGTAGGGGCGTTGCCCGTGAATTCCGTACAGAACCGATCAAGATCCAGCT
GCAACGGCACTGAAACCGGCGCAGTCAGCTTCACGTACGACACACCGCCG
AAGGGGCGACTACCGCCGCCGCCGCCGCCGCTTTGGCTGCTTCCGTAGAT
GCCGCCGATCGCCCCTCCCCCGACGCCGTCTTCCTCGCCTTCCCGCACCA
CGGGCAACGGCGATGGGAACCGGAAAGGGGTCTCGTTGTCTACCACGTCG
CTACCGTCGCCGCCTTCGCTCGTTCGAGCCGCCGCCGTGCCCGAAGACCA
GCCTTCCCGCAAAGACAGGTCCACCGATACCCCATCGGGGTGCGCCTTGT
GGTTGCCCCTCCTAGCGCCGACACCCGGTGTGCTCTTGTCGCGGCGGCCG
GGCGCACCCCCGATACTTGTCCCGGAGGGGGCCGAAGCTAAGGAGGAGAA
GGGGGAGCCCAGTATTTCGAGGGAGTCTACCACCTTTCCGAGGTCCTCCG
TAGGGGCGTTGCCCGTGAATTCCGTACAGAACCGATCAAGATCCAGCTGC
AACGGCACTGAAACCGGCGCAGTCAGCTTCACGTACGACACACCGCCGAA
GGGGCGACTACCGCCGCCGCCGCCGCCGCTTTGGCTGCTTCCGTAG
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