mRNA_P-fluviatile_contig8.14444.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14444.1
Unique NamemRNA_P-fluviatile_contig8.14444.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14444.1 vs. uniprot
Match: D7G2N5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2N5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 5.090e-40
Identity = 74/101 (73.27%), Postives = 85/101 (84.16%), Query Frame = 3 
Query:  222 MEQARQLFSDLSVRTLSARYQRRLTTLASEMEELTYEEVMAIYLVCFFLSMITFSSVYSMCKARRMREGMGYQEVRQTDNSFEMMSLGGRAGVTMVLPQGY 524
            MEQ +Q   DLS RT+S R+QRRLT  ASE+EEL YEE +AI LVCF LSM+ FSSVYSMCKARR REGMGY+EV++ +NSFEMMSLGGR GV+MVLPQGY
Sbjct:    1 MEQLKQFLGDLSARTVSVRHQRRLT-FASEVEELEYEEALAISLVCFLLSMVAFSSVYSMCKARRAREGMGYREVQRPENSFEMMSLGGRDGVSMVLPQGY 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2N5_ECTSI5.090e-4073.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1516617..1518851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_002880.1
Exons2
Model size591
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14444.1prot_P-fluviatile_contig8.14444.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1516681..1518630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817234.9651198-UTR-P-fluviatile_contig8:1516616..15166801622817234.9651198-UTR-P-fluviatile_contig8:1516616..1516680Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1516617..1516680 -
1693571604.1419759-UTR-P-fluviatile_contig8:1516616..15166801693571604.1419759-UTR-P-fluviatile_contig8:1516616..1516680Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1516617..1516680 -
1622817235.0052667-UTR-P-fluviatile_contig8:1518630..15188511622817235.0052667-UTR-P-fluviatile_contig8:1518630..1518851Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1518631..1518851 -
1693571604.1784759-UTR-P-fluviatile_contig8:1518630..15188511693571604.1784759-UTR-P-fluviatile_contig8:1518630..1518851Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1518631..1518851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817234.9778593-CDS-P-fluviatile_contig8:1516680..15168721622817234.9778593-CDS-P-fluviatile_contig8:1516680..1516872Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1516681..1516872 -
1693571604.1513307-CDS-P-fluviatile_contig8:1516680..15168721693571604.1513307-CDS-P-fluviatile_contig8:1516680..1516872Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1516681..1516872 -
1622817234.9927626-CDS-P-fluviatile_contig8:1518516..15186301622817234.9927626-CDS-P-fluviatile_contig8:1518516..1518630Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1518517..1518630 -
1693571604.161337-CDS-P-fluviatile_contig8:1518516..15186301693571604.161337-CDS-P-fluviatile_contig8:1518516..1518630Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1518517..1518630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14444.1

>prot_P-fluviatile_contig8.14444.1 ID=prot_P-fluviatile_contig8.14444.1|Name=mRNA_P-fluviatile_contig8.14444.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
MEQARQLFSDLSVRTLSARYQRRLTTLASEMEELTYEEVMAIYLVCFFLS
MITFSSVYSMCKARRMREGMGYQEVRQTDNSFEMMSLGGRAGVTMVLPQG
Y*
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mRNA from alignment at P-fluviatile_contig8:1516617..1518851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14444.1 ID=mRNA_P-fluviatile_contig8.14444.1|Name=mRNA_P-fluviatile_contig8.14444.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2235bp|location=Sequence derived from alignment at P-fluviatile_contig8:1516617..1518851- (Porterinema fluviatile SAG_2381)
CTCCGCCGTTCCCACTGCAGCACCGCTACCTTACACCACTTCCCTTTTCA
CTCACTTCTACTGAAATTATACCTCGAAGATAGCGAGAGGAACCAAGATA
CAGGGAGGGAGAGAGCGAGAGAGAAAGTGCGGAACATAAAAGTGAACCCG
AAGCAGGCGAGGTGATCACATTCCAGGAGCTGGCAAAGCCGGCGCAGCTC
GCTGCTTGCGTTGCCTACAGGATGGAGCAGGCCCGACAGCTTTTCAGCGA
TTTATCAGTCCGAACACTCTCGGCGCGATATCAACGGAGACTGACTACCT
TGGCTTCCGAAATGGAGGAGTTAACTTACGAAGAGGTGAGTGCATGCTTG
TTGGCGACGAGGGGCCTCTCACGCTCGTGAAATGGCGGATTTCACTCCTT
GGATGCAAGATACCGACTGAATGCGCTTGTCCATGTTTACCCAAACGCAT
GTGTGCAGCTGTCGACCGGGTGGTGGGGATTAGTTCGTGCACAGAGTGAG
CGTCGGTTCGAAGAAGTTCACCCACACCTACCCCAAAATTACTCTCAGCA
GCTCTGGGGTTCAAAGCAGGAAAGGTCGCCAGCATCTGATGCCCTCGACT
TGAAGCGCTACCACACGAAGGTAGCCTAGCACTGCCCGGGTTGTGCGAGC
ATGGCTTTCTGTCCTGCGTCAAGCAGGAGTGCCTCAAGGCCGTTTTATGT
TGACTAAATACGAACAACGCCCTGCTCCTGTAGTTGCAGCGGTCCGGGAG
AAAAGGCCTGGGTTGCCCGCTTGTGACGCCGTGGACGCGCGCCGGCACCT
GCACCCGACGAAGTCATGCACAACTATTCATGTTCTTGGGGCGGGGTGTC
GTGGCGACATTCTCTTCTGCATATAGAGTGTAATAGATTGCAGACGAGGA
TCTGCAACTCATTTTTTCACCCTCCTCTCATTGTGTCAAATATGCATGGT
CAGAGCGGCAATCGCTCAGAGGTAAACAAGTTGTGAGGCAGGCTATCAAG
GAATGTTGCTCTTTGGCCGGATGGTCGAGAAATCGGATGTTGAAAGGCCC
CGGCCCGGTGAGTACTGTAGGATCGCACACCCAAGGTCCTGCCGAACTAT
TTAGTCGCCTTTGAGCAAGCCAAGCTTGAGTCGGAGGCCAGCATGAAAAA
GGAACGACACGCCTCCCTAATATTGGCACTTCTTTTGCGGTGTGCAGAAC
ACTCCCTCGATGCGCTGAGATATGATCAAAGCGTAATCGTGCTAGCAACA
AGGCTTCAGCAAAGCCAGACCAGGGCAAGCCAACGGATGTGCGATTAGCC
CGTGTGGTCCTATACTCTTCGCATAAGAAGACACTTCTGCTCACCGCCAG
CCGTGCTGCTGCGCTGTTATTTTTGTGCTTAAGTTGGTTGAAAACATCAC
CGTGCCTTTTGCAGGGGGAAAATACGCAGGTACACGTGCGGGTATGTCTT
TATCCTCCGTCGACCTCGCCTCTGCGATTATGACGCGTCGAATTTTGTCC
GTTTGTATCCCACACGTTTCTTTCGCATCTCGCTCCTGCGAATTTACCCT
TCGTGCTCCGTTTTCCCCACACTCACGATGCCGCCCATCCACCCCTCTCC
CCCGCCTTGGCATTTTCTTACCGATCCCATAACTTCATACGCTACTACGG
TGGTGCAGAGTAGCCAGGACCAAATCGGAGCAAATGGGGAACGCGTTTTG
GAGTGTATCGTCTTCGACAAACCCGTCCTATTCATTTGGGTTGTTGCATT
CGAATTTTGAAGATCTCACCGTCAACTCGCGCTATCAAGTGCGAAACCTA
GCGATCATACAGCAAGAGCAATAGCCGTCACCACTTTTTCGATGTGGTCC
TGACTATTTTGGACCTCCGTAATGATGAAAACTCCATATTTGCAACAAGA
ACTCACGATTCCCCCCTCCCTTGTATTTCTGCCTACCTGTTCGTTCCCAA
AATACCCCTTCCTCCCCCTCCCCACTCAGGTGATGGCCATTTACCTAGTG
TGCTTCTTCCTGAGCATGATCACCTTCTCCTCGGTCTACAGCATGTGCAA
GGCGAGGAGGATGAGGGAGGGGATGGGTTACCAGGAGGTCCGCCAGACGG
ACAACTCGTTCGAGATGATGTCCCTCGGCGGGCGGGCGGGGGTGACGATG
GTCTTGCCCCAGGGGTACTGACAGTGCAGCGGGAGGGCCACAACAGCCGG
GGTCGACGTTCTGTTAAATGAGATGCAATTTGATG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1516617..1518851-

>mRNA_P-fluviatile_contig8.14444.1 ID=mRNA_P-fluviatile_contig8.14444.1|Name=mRNA_P-fluviatile_contig8.14444.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig8:1516617..1518851- (Porterinema fluviatile SAG_2381)
ATGGAGCAGGCCCGACAGCTTTTCAGCGATTTATCAGTCCGAACACTCTC
GGCGCGATATCAACGGAGACTGACTACCTTGGCTTCCGAAATGGAGGAGT
TAACTTACGAAGAGATGGAGCAGGCCCGACAGCTTTTCAGCGATTTATCA
GTCCGAACACTCTCGGCGCGATATCAACGGAGACTGACTACCTTGGCTTC
CGAAATGGAGGAGTTAACTTACGAAGAGGTGATGGCCATTTACCTAGTGT
GCTTCTTCCTGAGCATGATCACCTTCTCCTCGGTCTACAGCATGTGCAAG
GCGAGGAGGATGAGGGAGGGGATGGGTTACCAGGAGGTCCGCCAGACGGA
CAACTCGTTCGAGATGATGTCCCTCGGCGGGCGGGCGGGGGTGACGATGG
TCTTGCCCCAGGGGTACTGAGTGATGGCCATTTACCTAGTGTGCTTCTTC
CTGAGCATGATCACCTTCTCCTCGGTCTACAGCATGTGCAAGGCGAGGAG
GATGAGGGAGGGGATGGGTTACCAGGAGGTCCGCCAGACGGACAACTCGT
TCGAGATGATGTCCCTCGGCGGGCGGGCGGGGGTGACGATGGTCTTGCCC
CAGGGGTACTGA
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