mRNA_P-fluviatile_contig8.14441.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14441.1
Unique NamemRNA_P-fluviatile_contig8.14441.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1492511..1493487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size977
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817234.5430126-UTR-P-fluviatile_contig8:1492510..14931091622817234.5430126-UTR-P-fluviatile_contig8:1492510..1493109Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1492511..1493109 +
1693571603.51778-UTR-P-fluviatile_contig8:1492510..14931091693571603.51778-UTR-P-fluviatile_contig8:1492510..1493109Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1492511..1493109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817234.5537887-CDS-P-fluviatile_contig8:1493109..14934871622817234.5537887-CDS-P-fluviatile_contig8:1493109..1493487Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1493110..1493487 +
1693571603.5280492-CDS-P-fluviatile_contig8:1493109..14934871693571603.5280492-CDS-P-fluviatile_contig8:1493109..1493487Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1493110..1493487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14441.1prot_P-fluviatile_contig8.14441.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1493110..1493487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14441.1

>prot_P-fluviatile_contig8.14441.1 ID=prot_P-fluviatile_contig8.14441.1|Name=mRNA_P-fluviatile_contig8.14441.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=126bp
MLLSRKRQWRRMVCSRRHHVAPPPPVPAPEGDGVGGRVTMQRTVSFHETA
RVLLVPSRRELLKLDHDAGTHGDGGTREETIWWKRKDLIRIKRSWRKQIY
ARGLQDCTTSLLLGDRLVHHIGQEEE
back to top

mRNA from alignment at P-fluviatile_contig8:1492511..1493487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14441.1 ID=mRNA_P-fluviatile_contig8.14441.1|Name=mRNA_P-fluviatile_contig8.14441.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=977bp|location=Sequence derived from alignment at P-fluviatile_contig8:1492511..1493487+ (Porterinema fluviatile SAG_2381)
CGACGGAATCTCTATTGCCCTCACCACTACCGCATACGCGCCTGTTAGAA
CACCAATACAAGTCACACAATATGGGCGGGCTATCTCCACGATCACTGGT
AGAATTTGGCGTGGTGTGTTGATCTAGAGATTGGGAGCCGGGTTGGGGTC
TGAAAATTTCAAACAGCAGGTAGGTCGGAACATATTCTACGCGAGCCGCA
CGGCTTCGTTTGCTCTCCGCACCATGACCCTATGGATAGAGGTGGAAAAG
CAACCAGGCTACCTTTCCAGAACACTACACTTCGTCAGATATAGAGAGCA
GAACGTGGCGTTACGTGTGAATCCTTCTCGCTATCGCAGAATCGCATCTC
CCAGCGTCGCGTTTCTCGACCAATTCCGCTGTGTGTGTATTTTCTCCCGA
GACACGAAATTGCACCCCTGGCGCTGAATCTGCGTACCGGCCTTGTCATT
ACCTGCATCAAACAACACCACCAATCATCAACCGCATTTCTGATTTCTGC
ACAACAAGACAAGCACCAACTTCAGGAAGCGCTCAGGGGGAGAGCATTCG
GACCCACGTCTGCCCGCGGGCCTGGGCGAGAGAGGGGTCCTTCGTGAGCA
TGTTGCTGAGTAGGAAACGGCAATGGAGAAGAATGGTGTGCAGCAGGCGA
CATCATGTTGCACCACCACCGCCCGTCCCTGCTCCTGAAGGAGATGGGGT
CGGAGGCAGGGTCACGATGCAGAGGACTGTTTCCTTCCATGAGACGGCTC
GCGTCCTGCTGGTCCCCTCCCGGCGCGAGCTGCTGAAGCTCGACCACGAC
GCCGGCACACATGGCGATGGTGGCACTCGGGAGGAGACGATATGGTGGAA
GCGAAAAGATTTGATCAGAATCAAGAGGTCGTGGAGGAAGCAGATCTACG
CCAGGGGGCTTCAGGACTGCACAACCTCTCTACTGCTCGGCGACCGACTG
GTGCACCACATCGGCCAGGAGGAGGAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:1492511..1493487+

>mRNA_P-fluviatile_contig8.14441.1 ID=mRNA_P-fluviatile_contig8.14441.1|Name=mRNA_P-fluviatile_contig8.14441.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=756bp|location=Sequence derived from alignment at P-fluviatile_contig8:1492511..1493487+ (Porterinema fluviatile SAG_2381)
ATGTTGCTGAGTAGGAAACGGCAATGGAGAAGAATGGTGTGCAGCAGGCG
ACATCATGTTGCACCACCACCGCCCGTCCCTGCTCCTGAAGGAGATGGGG
TCGGAGGCAGGGTCACGATGCAGAGGACTGTTTCCTTCCATGAGACGGCT
CGCGTCCTGCTGGTCCCCTCCCGGCGCGAGCTGCTGAAGCTCGACCACGA
CGCCGGCACACATGGCGATGGTGGCACTCGGGAGGAGACGATATGGTGGA
AGCGAAAAGATTTGATCAGAATCAAGAGGTCGTGGAGGAAGCAGATCTAC
GCCAGGGGGCTTCAGGACTGCACAACCTCTCTACTGCTCGGCGACCGACT
GGTGCACCACATCGGCCAGGAGGAGGAGATGTTGCTGAGTAGGAAACGGC
AATGGAGAAGAATGGTGTGCAGCAGGCGACATCATGTTGCACCACCACCG
CCCGTCCCTGCTCCTGAAGGAGATGGGGTCGGAGGCAGGGTCACGATGCA
GAGGACTGTTTCCTTCCATGAGACGGCTCGCGTCCTGCTGGTCCCCTCCC
GGCGCGAGCTGCTGAAGCTCGACCACGACGCCGGCACACATGGCGATGGT
GGCACTCGGGAGGAGACGATATGGTGGAAGCGAAAAGATTTGATCAGAAT
CAAGAGGTCGTGGAGGAAGCAGATCTACGCCAGGGGGCTTCAGGACTGCA
CAACCTCTCTACTGCTCGGCGACCGACTGGTGCACCACATCGGCCAGGAG
GAGGAG
back to top