mRNA_P-fluviatile_contig8.14425.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14425.1
Unique NamemRNA_P-fluviatile_contig8.14425.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1279005..1279831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.8713748-CDS-P-fluviatile_contig8:1279004..12792291622817215.8713748-CDS-P-fluviatile_contig8:1279004..1279229Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1279005..1279229 +
1693571534.246824-CDS-P-fluviatile_contig8:1279004..12792291693571534.246824-CDS-P-fluviatile_contig8:1279004..1279229Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1279005..1279229 +
1622817215.890427-CDS-P-fluviatile_contig8:1279770..12798301622817215.890427-CDS-P-fluviatile_contig8:1279770..1279830Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1279771..1279830 +
1693571534.2671993-CDS-P-fluviatile_contig8:1279770..12798301693571534.2671993-CDS-P-fluviatile_contig8:1279770..1279830Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1279771..1279830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14425.1prot_P-fluviatile_contig8.14425.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1279005..1279830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14425.1

>prot_P-fluviatile_contig8.14425.1 ID=prot_P-fluviatile_contig8.14425.1|Name=mRNA_P-fluviatile_contig8.14425.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=95bp
PCVVLTAAAAARGGAQSGQVTVGSARRGETKSEEKPSAKGRDVEGNAESP
MHGHLALRAQYRIGEEVAMALLKTQADPAGELEIRTLAAAAGATT
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mRNA from alignment at P-fluviatile_contig8:1279005..1279831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14425.1 ID=mRNA_P-fluviatile_contig8.14425.1|Name=mRNA_P-fluviatile_contig8.14425.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=827bp|location=Sequence derived from alignment at P-fluviatile_contig8:1279005..1279831+ (Porterinema fluviatile SAG_2381)
CCGTGCGTGGTCCTAACGGCGGCCGCGGCGGCGAGGGGGGGCGCACAAAG
CGGACAAGTAACCGTAGGGAGTGCGCGGCGCGGCGAAACCAAGTCCGAGG
AGAAACCGAGCGCGAAAGGGCGCGATGTCGAAGGAAATGCAGAATCTCCA
ATGCACGGCCATCTCGCCCTTCGTGCGCAGTATAGGATCGGAGAAGAAGT
CGCTATGGCACTCCTCAAAACACAGGTAGGTGCCTTACGTGCGGAGTCTG
AGTCGGTGGTGTGCATCGGCCCGACGCCACGCCTTGGTGGGGAATTTTTT
TGAAAAAAAATGGACGAAATTTGATATTCGAAGTTGTCTGGCGTCTCTGG
CGTCACTGTCTCCTCTTTTTTTTGCTCCTTTGCTGGTGTAGATATAAATA
TACAGCAGTGTTTCACATGCATTTCCGTGTGAAAGGATATTTTTGTTCCA
GGCGTTTGGTGTGTATAAAACAGGGTACACTCAGGCCCTCGTCTAACGTT
TCCACGCGGACGACCGACAGCACGGGTCGTGCAAACCTCGCCGTTGCCGC
CGTGCATGCACAAACTTAGGGGTAACAGTCAACAGCAATTTAGCTTATGT
AAAACACGGGCAGCAATACCGCCGCGCGTGTGCATGTACATAGCTAAGGA
GAGCATATGTCTACCGTTAGTTCATGTTTTGTCATGACCATTTTTCACGA
GACCGTTCGTTACCTGCTTGTCCTCTTTGTGGTTTCGTCGTGGCCGGGGC
CTCCCTACCTATCAAGGCGGACCCTGCTGGCGAACTTGAAATCAGGACAC
TTGCCGCTGCCGCAGGCGCGACCACCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1279005..1279831+

>mRNA_P-fluviatile_contig8.14425.1 ID=mRNA_P-fluviatile_contig8.14425.1|Name=mRNA_P-fluviatile_contig8.14425.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=570bp|location=Sequence derived from alignment at P-fluviatile_contig8:1279005..1279831+ (Porterinema fluviatile SAG_2381)
CCGTGCGTGGTCCTAACGGCGGCCGCGGCGGCGAGGGGGGGCGCACAAAG
CGGACAAGTAACCGTAGGGAGTGCGCGGCGCGGCGAAACCAAGTCCGAGG
AGAAACCGAGCGCGAAAGGGCGCGATGTCGAAGGAAATGCAGAATCTCCA
ATGCACGGCCATCTCGCCCTTCGTGCGCAGTATAGGATCGGAGAAGAAGT
CGCTATGGCACTCCTCAAAACACAGCCGTGCGTGGTCCTAACGGCGGCCG
CGGCGGCGAGGGGGGGCGCACAAAGCGGACAAGTAACCGTAGGGAGTGCG
CGGCGCGGCGAAACCAAGTCCGAGGAGAAACCGAGCGCGAAAGGGCGCGA
TGTCGAAGGAAATGCAGAATCTCCAATGCACGGCCATCTCGCCCTTCGTG
CGCAGTATAGGATCGGAGAAGAAGTCGCTATGGCACTCCTCAAAACACAG
GCGGACCCTGCTGGCGAACTTGAAATCAGGACACTTGCCGCTGCCGCAGG
CGCGACCACCGCGGACCCTGCTGGCGAACTTGAAATCAGGACACTTGCCG
CTGCCGCAGGCGCGACCACC
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