|
|
Homology
BLAST of mRNA_P-fluviatile_contig8.14420.1 vs. uniprot
Match: D7G2K9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2K9_ECTSI) HSP 1 Score: 282 bits (722), Expect = 6.060e-88 Identity = 204/287 (71.08%), Postives = 213/287 (74.22%), Query Frame = 1
Query: 40 MGRVRRYKKVKAMDPFAKGGRGGRTDIGRKGGNDLDRNLPPDVKNHQAQRLRNLEGEGKSKKSKHKRRLPQWAHDELKETAKRVREEHANPERVGRQAEPQRATMEGKREDESMRQFNKRVRAGTAQLLKDEFKEHSSTNXXXXXXXXXXXXXXXXXXQGLWEEVQRRERLDEEQAAAGFGEDESDSRGATXXXXXXXXQRGRXXXXEGGRGADDGGGIK--WGILGRADGGEGA-ELPQAERIMFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAKDGSLGGG 891
MGRVR+YKKVKAMDPFAKGG GGR +GRKGG+DLDRNLPPDVKNHQAQRL NLE EGK KK K+KRRLPQWAH+ELKETAKRVREEHA+P GRQ EPQRA MEGKREDESMRQFNKRVR GTAQLLKDEFKEHSSTN XXXXXXXXXXXXXXXXX LW XXXXXXXX XXXX WG+LGRAD EGA +L Q ERI FGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAA + GGG
Sbjct: 1 MGRVRKYKKVKAMDPFAKGGCGGRMGMGRKGGSDLDRNLPPDVKNHQAQRLNNLE-EGKDKKKKNKRRLPQWAHEELKETAKRVREEHADPGGKGRQPEPQRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNKXXXXXXXXXXXXXXXXXXXLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAA--AAGGG 284
BLAST of mRNA_P-fluviatile_contig8.14420.1 vs. uniprot
Match: A0A835YUV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV8_9STRA) HSP 1 Score: 117 bits (293), Expect = 6.840e-26 Identity = 122/353 (34.56%), Postives = 157/353 (44.48%), Query Frame = 1
Query: 40 MGRVRRYKKVKAMDPFAKGGRGGRTDIGRKGGNDLDRNLPPDVKNHQAQRLRNLEGEGKSKKSKHKRRLPQWAHDELKETAKRVREEHANPERV-GRQAEP-------QRATMEGKREDESMRQFNKRVRAGTAQLLKDEFKEHSSTNXXXXXXXXXXXXXXXXXXQGLWEEVQRRERLDEEQAAAGFGEDESDSRGATXXXXXXXXQRGRXXXXEGGRGADDGGGIKWGILGRADGGEGAELPQAERIMFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAKDGSLGGGXXXXXXXXXXXXXXXXXXXXXAEANKAQKRQMEEMRQRVQEAYSGLKKKRRAGQTQFVGSD 1074
MGRVRRYKK K +D +K R + D+ + NLPPD NHQAQRL+ +G K+ + K+RLP+WA +EL+ETAKR RE A+ + + G A P + + KR DES+R+FN+RVR A+ LKD K SST QGLWEE + + EEQ A E + + E I FGE H PP +PK +G K KPW R D G XXXXXXXXX AE + + +Q+E +R AY+ LKK+RRAGQ Q V D
Sbjct: 1 MGRVRRYKKAKNLDITSKRKRADKKDV--------EHNLPPDTANHQAQRLK---ADGTLKR-RAKQRLPEWAKEELRETAKRERE--ADKQLLAGAAATPLPGENDTPKVKITPKRTDESLREFNERVRKVAAEALKDNAKRASSTVARRKKHLAEKSQKKKLQRQGLWEE-HKMQVAREEQGIA----------------------------------------------------EERDFSKPEHIQFGETVHEPPRFQSMPKLKGLKPDLAEKPWLRGLRSDAITG---LKRKAGGXXXXXXXXXGVLSAEGAQLKAQQLERVRTEAVAAYADLKKRRRAGQVQHVAHD 283
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_002610.1 |
| Exons | 5 |
| Model size | 1599 |
| Cds size | 1041 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817230.7545106-UTR-P-fluviatile_contig8:1216162..1216201 | 1622817230.7545106-UTR-P-fluviatile_contig8:1216162..1216201 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 1216163..1216201 + |
| 1693571584.6056318-UTR-P-fluviatile_contig8:1216162..1216201 | 1693571584.6056318-UTR-P-fluviatile_contig8:1216162..1216201 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 1216163..1216201 + |
| 1622817230.816886-UTR-P-fluviatile_contig8:1219086..1219605 | 1622817230.816886-UTR-P-fluviatile_contig8:1219086..1219605 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 1219087..1219605 + |
| 1693571584.683409-UTR-P-fluviatile_contig8:1219086..1219605 | 1693571584.683409-UTR-P-fluviatile_contig8:1219086..1219605 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig8 1219087..1219605 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817230.765082-CDS-P-fluviatile_contig8:1216201..1216370 | 1622817230.765082-CDS-P-fluviatile_contig8:1216201..1216370 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1216202..1216370 + |
| 1693571584.6136034-CDS-P-fluviatile_contig8:1216201..1216370 | 1693571584.6136034-CDS-P-fluviatile_contig8:1216201..1216370 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1216202..1216370 + |
| 1622817230.7750878-CDS-P-fluviatile_contig8:1217058..1217192 | 1622817230.7750878-CDS-P-fluviatile_contig8:1217058..1217192 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1217059..1217192 + |
| 1693571584.6216989-CDS-P-fluviatile_contig8:1217058..1217192 | 1693571584.6216989-CDS-P-fluviatile_contig8:1217058..1217192 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1217059..1217192 + |
| 1622817230.7852027-CDS-P-fluviatile_contig8:1217463..1217594 | 1622817230.7852027-CDS-P-fluviatile_contig8:1217463..1217594 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1217464..1217594 + |
| 1693571584.6396449-CDS-P-fluviatile_contig8:1217463..1217594 | 1693571584.6396449-CDS-P-fluviatile_contig8:1217463..1217594 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1217464..1217594 + |
| 1622817230.7952745-CDS-P-fluviatile_contig8:1217850..1218141 | 1622817230.7952745-CDS-P-fluviatile_contig8:1217850..1218141 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1217851..1218141 + |
| 1693571584.6600792-CDS-P-fluviatile_contig8:1217850..1218141 | 1693571584.6600792-CDS-P-fluviatile_contig8:1217850..1218141 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1217851..1218141 + |
| 1622817230.8072093-CDS-P-fluviatile_contig8:1218770..1219086 | 1622817230.8072093-CDS-P-fluviatile_contig8:1218770..1219086 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1218771..1219086 + |
| 1693571584.6712377-CDS-P-fluviatile_contig8:1218770..1219086 | 1693571584.6712377-CDS-P-fluviatile_contig8:1218770..1219086 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig8 1218771..1219086 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig8.14420.1 >prot_P-fluviatile_contig8.14420.1 ID=prot_P-fluviatile_contig8.14420.1|Name=mRNA_P-fluviatile_contig8.14420.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=347bp
MGRVRRYKKVKAMDPFAKGGRGGRTDIGRKGGNDLDRNLPPDVKNHQAQR LRNLEGEGKSKKSKHKRRLPQWAHDELKETAKRVREEHANPERVGRQAEP QRATMEGKREDESMRQFNKRVRAGTAQLLKDEFKEHSSTNKRKKKYLDDK KRKKKLKKQGLWEEVQRRERLDEEQAAAGFGEDESDSRGATAGASGGGGQ RGRGGGGEGGRGADDGGGIKWGILGRADGGEGAELPQAERIMFGEVAHAP PDLAKIPKPRGFKDQGQAKPWARQAAKDGSLGGGGRGGGCGGREDESRQE QREMQAEANKAQKRQMEEMRQRVQEAYSGLKKKRRAGQTQFVGSDL* back to topmRNA from alignment at P-fluviatile_contig8:1216163..1219605+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig8.14420.1 ID=mRNA_P-fluviatile_contig8.14420.1|Name=mRNA_P-fluviatile_contig8.14420.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3443bp|location=Sequence derived from alignment at P-fluviatile_contig8:1216163..1219605+ (Porterinema fluviatile SAG_2381) CCTGAATCTCGCACCGCAGCCAACCAGCTGACATAAACCATGGGTCGTGT
AAGGAGGTACAAGAAGGTGAAGGCGATGGACCCCTTCGCCAAGGGTGGCC
GAGGTGGAAGGACGGATATTGGGCGAAAGGGAGGAAACGACTTAGATCGA
AATTTGCCTCCGGACGTCAAGAACCACCAAGCCCAGCGGCTCAGAAACCT
TGAAGGAGGTCTGTGCTCGAGATAGATAGGGCAGTAAAGGTGCTGCATGA
GTGGGCCTCGACGTGTGCTTCCTATTGAAATCTTGTTCGTCCCGACGGGT
TGTCAGCCGCAGCGCTTATCACACAATTGGCCCCGTTGCCGGCCTCGACG
AGATAGAGCGAGCCCCCACTCCGCTGGTCACCACGCTCGAGAAAAGTGGA
TCGACAAGATTGATATTGCAGGACTTTGCGGAGAGTCGCTACAAAGTTGT
AACCTTGCATGAGTATCTTAAAAAAAGCTGGTCAACAGCTCCTGCCTGGT
TTCGAAAGCAAGCCACCCCATCTCCTTTCGAAGGCGGCATGGGTTTGTAC
GTGCTTCGACTTTACCCAGACGCTTGCAGATGCGCGTCCGTCATCACGGC
CTCGTCTTACACGCCGATATCAGCCACACACACCGCTGCGTCCGCACGAT
CGTCTTCTCCTGCCGCGCCGCGTGTCTTTCGCACACCGCACCGCATGTGC
ATTGTGTTCGTGCGTGTCGACAGTTGTCGGACACCGGGGGCCTCGCTTTC
GCCGATGTGCTGCCGCCGCCGCTGCTGCTGCTGCTGCTCCTGCTACTGAT
GCTACTGATGCTACGCAAGAATCACTGCTGTCTGATATCGCTGACCCCTA
CACTCTCTCACCCATCGCCAACGAACGCACGGACGGAGGGACGCAGAGGG
CAAGAGCAAGAAGAGCAAGCACAAGCGCCGTCTGCCCCAGTGGGCGCACG
ATGAGCTCAAGGAGACGGCGAAGAGGGTTCGCGAGGAGCACGCCAACCCG
GAACGCGTCGGGCGCCAGGCGGAGCCTCAGGTGTGAACTGTCACTTTAGC
GGCGAGGTGCTGCCTCGGTGCGCTCCACGAGCAGTTGCGAATAGGCCTTC
AGGCTTCCGTGCGCGCTACGCTGGAGCGATTTCGTGTACTGAAGTCGGCG
CCGCTGTACTCCTTTCTTCGTCGTGGCGCCTGCTTCATCCACCACGTGCC
CTGTGGCCGCATAACACCGCCACTTCGTTGTTTTTTTTCCGATGTCGTTT
ACCACACAATCCCCGTTGTCCTGTCCTCGCTGCTGCGGTGGTGTCCTTCA
GCGAGCGACGATGGAGGGCAAGCGCGAGGACGAGAGCATGAGGCAGTTCA
ACAAGCGGGTCCGGGCGGGGACAGCGCAGCTGCTCAAGGACGAGTTCAAG
GAGCACAGCTCCACCAACAAGCGGAAAAAAAAGTGAGGAAGGGCCGGCGG
GGACTGCGGTGAACACTAGACTCTTGTTTTGGTTCTTGCACGAGCACTTT
TTTAAGATGATGTCAGCATGATCGTTAGGCGCGGAGCATCTGTCTTTCGA
CTACTTGCCCTTCTCCTGCGGCTTGCCACGCATGATCACACGCTTACACG
GTACCCCGCGACTGGCTCGCCTTCCTTCCTTGCTTCTTCGTTGTCCTTCC
TTCTTCTCTCACCTTTTGGCGTCGACAACAACAAAAAGGTATCTTGACGA
CAAGAAGCGCAAGAAAAAGCTAAAAAAGCAGGGGCTCTGGGAGGAGGTGC
AGCGGCGCGAGCGCCTCGATGAAGAACAAGCGGCGGCCGGGTTTGGTGAG
GACGAGAGCGACAGCAGGGGAGCAACAGCCGGAGCCAGCGGCGGCGGGGG
GCAGCGCGGGCGCGGGGGTGGTGGAGAGGGCGGGCGCGGTGCTGATGACG
GTGGCGGGATTAAGTGGGGGATATTGGGGCGGGCGGATGGCGGAGAGGGC
GCGGAGCTCCCCCAGGCGGAGCGCATCATGTGCGTGCCTTCCATTCGAGT
ATACCCGACAAGAAGCAATAGATGGGCCCAATTTTGCCCGGGCTTTGGAT
GGAATTCGAGAAGAATTCTCCCCCGAGTTTCATCTCTGCTGCTTGCGCCG
CACCGCAATCACTCCATGAGGTAGATATGCTCGCCCTGTCCTTGGAAACT
GTTTGCTTTCTGCTCCACGAAGACTGCTGTTGCCTGGGAATGCGGCTCCA
CGTGACTGTCTACCGCGCGCAGGCGAGTTTCTTACATGTGGGTGGCGTGT
AAAAAATCATCAGGCGCTGCGTTGCCCCAGACTAGAGAGTGTGATGTCGG
CCACATGCTGGGACGTACGGGTATACGAGGCTCGTTTGCCATACGGAATT
TGTCGATGGCGCCTTCCTCATGAGAGATCAATGCGAGCCTTGAATGACGA
AGCCTGGGCCTGGCTCAGGAAGCACGCCCGCGGCGTGGCGAAAGCCTGAG
CTTGCGTGATGTCCTCCGTCGCTCTGCAAATGGTCAAGCATTAACTAGTA
GACCTTTGGAGCCCTGTGGGTGCCCTGCCCACAAAATCTCTTGACAACTA
CCACACTGCGGTTGTGTCTCGCACCTTTCTACTCTTCTGGCTGTTGCACA
CGCGCAAGGTTCGGCGAGGTTGCGCACGCGCCTCCAGACCTTGCCAAGAT
TCCCAAGCCGCGAGGCTTCAAGGATCAGGGGCAGGCCAAGCCGTGGGCGA
GGCAAGCCGCCAAGGATGGTAGCCTCGGCGGCGGCGGCCGTGGGGGTGGG
TGCGGGGGTAGGGAAGATGAGTCAAGACAAGAACAACGGGAGATGCAGGC
TGAGGCCAATAAGGCGCAGAAGCGACAGATGGAGGAGATGAGGCAGAGGG
TGCAGGAGGCGTATAGCGGGCTCAAGAAGAAGAGGCGGGCGGGCCAAACG
CAGTTCGTGGGCAGCGATCTCTGATCTGAAAGACGATTTTTGTATCTAAT
GTTTTGGTCAATCTGGCAAGGGGCCCTTGGGTGGGAACGGAGTGGTTATT
TCCTGGCAAGAGGACGTTAGGCGGGAAAGAGAGAAGGGGGGGGGTCCGCG
AGTGCTCGGGAGTTGATCTTGTGTCCACCGCAGATTGAGACCGAGAGACG
GGATGTTTCGCCAGCGTTGGAATTGATTTGAGGGATGAAACGAAACCGAA
GCGTCAGTCGAGAAGCGTTCGTGGCTTGAGTTGATGTGTGTGGGAACCCT
CCACTTCTTGACGTTTGACGACAGGTGTAAGCGAGTCCAGCTTTTTGATT
GCAGTCCATTTTTATTGGTGAAGAGGAAAGGACAAGGCACCAATACGGCT
TCGATCAAGCCGTTGTTCTTACCCGAGGAGAGAAATTTTCGGCAGATTGA
ACTCTGCATCCAAGCCGTGTATGCTGAACACAGCTTCAGAAAAGCCGGTT
TGAATGGGCAAACGACCACAGCAGACCTTGAGGTCTTCCTTTT back to topCoding sequence (CDS) from alignment at P-fluviatile_contig8:1216163..1219605+ >mRNA_P-fluviatile_contig8.14420.1 ID=mRNA_P-fluviatile_contig8.14420.1|Name=mRNA_P-fluviatile_contig8.14420.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2082bp|location=Sequence derived from alignment at P-fluviatile_contig8:1216163..1219605+ (Porterinema fluviatile SAG_2381) ATGGGTCGTGTAAGGAGGTACAAGAAGGTGAAGGCGATGGACCCCTTCGC CAAGGGTGGCCGAGGTGGAAGGACGGATATTGGGCGAAAGGGAGGAAACG ACTTAGATCGAAATTTGCCTCCGGACGTCAAGAACCACCAAGCCCAGCGG CTCAGAAACCTTGAAGGAGATGGGTCGTGTAAGGAGGTACAAGAAGGTGA AGGCGATGGACCCCTTCGCCAAGGGTGGCCGAGGTGGAAGGACGGATATT GGGCGAAAGGGAGGAAACGACTTAGATCGAAATTTGCCTCCGGACGTCAA GAACCACCAAGCCCAGCGGCTCAGAAACCTTGAAGGAGAGGGCAAGAGCA AGAAGAGCAAGCACAAGCGCCGTCTGCCCCAGTGGGCGCACGATGAGCTC AAGGAGACGGCGAAGAGGGTTCGCGAGGAGCACGCCAACCCGGAACGCGT CGGGCGCCAGGCGGAGCCTCAGAGGGCAAGAGCAAGAAGAGCAAGCACAA GCGCCGTCTGCCCCAGTGGGCGCACGATGAGCTCAAGGAGACGGCGAAGA GGGTTCGCGAGGAGCACGCCAACCCGGAACGCGTCGGGCGCCAGGCGGAG CCTCAGCGAGCGACGATGGAGGGCAAGCGCGAGGACGAGAGCATGAGGCA GTTCAACAAGCGGGTCCGGGCGGGGACAGCGCAGCTGCTCAAGGACGAGT TCAAGGAGCACAGCTCCACCAACAAGCGGAAAAAAAACGAGCGACGATGG AGGGCAAGCGCGAGGACGAGAGCATGAGGCAGTTCAACAAGCGGGTCCGG GCGGGGACAGCGCAGCTGCTCAAGGACGAGTTCAAGGAGCACAGCTCCAC CAACAAGCGGAAAAAAAAGTATCTTGACGACAAGAAGCGCAAGAAAAAGC TAAAAAAGCAGGGGCTCTGGGAGGAGGTGCAGCGGCGCGAGCGCCTCGAT GAAGAACAAGCGGCGGCCGGGTTTGGTGAGGACGAGAGCGACAGCAGGGG AGCAACAGCCGGAGCCAGCGGCGGCGGGGGGCAGCGCGGGCGCGGGGGTG GTGGAGAGGGCGGGCGCGGTGCTGATGACGGTGGCGGGATTAAGTGGGGG ATATTGGGGCGGGCGGATGGCGGAGAGGGCGCGGAGCTCCCCCAGGCGGA GCGCATCATGTATCTTGACGACAAGAAGCGCAAGAAAAAGCTAAAAAAGC AGGGGCTCTGGGAGGAGGTGCAGCGGCGCGAGCGCCTCGATGAAGAACAA GCGGCGGCCGGGTTTGGTGAGGACGAGAGCGACAGCAGGGGAGCAACAGC CGGAGCCAGCGGCGGCGGGGGGCAGCGCGGGCGCGGGGGTGGTGGAGAGG GCGGGCGCGGTGCTGATGACGGTGGCGGGATTAAGTGGGGGATATTGGGG CGGGCGGATGGCGGAGAGGGCGCGGAGCTCCCCCAGGCGGAGCGCATCAT GTTCGGCGAGGTTGCGCACGCGCCTCCAGACCTTGCCAAGATTCCCAAGC CGCGAGGCTTCAAGGATCAGGGGCAGGCCAAGCCGTGGGCGAGGCAAGCC GCCAAGGATGGTAGCCTCGGCGGCGGCGGCCGTGGGGGTGGGTGCGGGGG TAGGGAAGATGAGTCAAGACAAGAACAACGGGAGATGCAGGCTGAGGCCA ATAAGGCGCAGAAGCGACAGATGGAGGAGATGAGGCAGAGGGTGCAGGAG GCGTATAGCGGGCTCAAGAAGAAGAGGCGGGCGGGCCAAACGCAGTTCGT GGGCAGCGATCTCTGAGTTCGGCGAGGTTGCGCACGCGCCTCCAGACCTT GCCAAGATTCCCAAGCCGCGAGGCTTCAAGGATCAGGGGCAGGCCAAGCC GTGGGCGAGGCAAGCCGCCAAGGATGGTAGCCTCGGCGGCGGCGGCCGTG GGGGTGGGTGCGGGGGTAGGGAAGATGAGTCAAGACAAGAACAACGGGAG ATGCAGGCTGAGGCCAATAAGGCGCAGAAGCGACAGATGGAGGAGATGAG GCAGAGGGTGCAGGAGGCGTATAGCGGGCTCAAGAAGAAGAGGCGGGCGG GCCAAACGCAGTTCGTGGGCAGCGATCTCTGA back to top
|