mRNA_P-fluviatile_contig8.14419.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14419.1
Unique NamemRNA_P-fluviatile_contig8.14419.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14419.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.050e-35
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 2 
Query:    2 YHKYWCRCFFPTTMTLDMTATQRVEGMFSVLKKGRFVNRRSSLVWVKSELEKRIAGLSAASNL--SKTFSLGSKHIDNHVLKTAEHVFDQL 268
            +H++W RCFFPTTMTL+MTATQRVEGMFSVLKKGR VNRR SLV VK+ELEKRIAG + ASNL  +K  SLG +HID+HVLKTAEHVF QL
Sbjct:  294 HHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKTAEHVFRQL 384
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BLAST of mRNA_P-fluviatile_contig8.14419.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 4.820e-15
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 2 
Query:    8 KYWCRCFFPTTMTLDMTATQRVEGMFSVLKKGRFVNRRSSLVWVKSELEKRIAGLSAASNL--SKTFSLGSKHIDNHVLKTAEHV 256
            K+W RCF PT MTLDMT++QRVEG FSVLKKGR + R S+   V+++ E+    L  AS +  +K  SLG  +++N V K+ E V
Sbjct:  241 KHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKV 325
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BLAST of mRNA_P-fluviatile_contig8.14419.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.940e-8
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:    8 KYWCRCFFPTTMTLDMTATQRVEGMFSVLKKGRFVNRRSSLVWVKSELEKRIAGLSAASNL 190
            K+W RC  PTTMTL MTA+QRVEG FSV+K G  V + S+   V+  +E     L+ AS +
Sbjct: 1022 KHWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRM 1082
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE4.050e-3576.92SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI4.820e-1549.41Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE2.940e-849.18SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1213206..1213650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.822573-CDS-P-fluviatile_contig8:1213205..12133941622817215.822573-CDS-P-fluviatile_contig8:1213205..1213394Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1213206..1213394 +
1693571534.2201002-CDS-P-fluviatile_contig8:1213205..12133941693571534.2201002-CDS-P-fluviatile_contig8:1213205..1213394Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1213206..1213394 +
1622817215.8342457-CDS-P-fluviatile_contig8:1213566..12136501622817215.8342457-CDS-P-fluviatile_contig8:1213566..1213650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1213567..1213650 +
1693571534.2346003-CDS-P-fluviatile_contig8:1213566..12136501693571534.2346003-CDS-P-fluviatile_contig8:1213566..1213650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1213567..1213650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14419.1prot_P-fluviatile_contig8.14419.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1213206..1213650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14419.1

>prot_P-fluviatile_contig8.14419.1 ID=prot_P-fluviatile_contig8.14419.1|Name=mRNA_P-fluviatile_contig8.14419.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=91bp
VPQVLVSLLLPDDYDARHDSDTEGGGDVQCAEEGAVCEPPLFSGLGEVRA
GKAYRRVECGVEPLQDLQPWQQAHRQPRAQNCRACLRPTAS
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mRNA from alignment at P-fluviatile_contig8:1213206..1213650+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14419.1 ID=mRNA_P-fluviatile_contig8.14419.1|Name=mRNA_P-fluviatile_contig8.14419.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=445bp|location=Sequence derived from alignment at P-fluviatile_contig8:1213206..1213650+ (Porterinema fluviatile SAG_2381)
GTACCACAAGTACTGGTGTCGCTGCTTCTTCCCGACGACTATGACGCTCG
ACATGACAGCGACACAGAGGGTGGAGGGGATGTTCAGTGTGCTGAAGAAG
GGGCGGTTTGTGAACCGCCGCTCTTCTCTGGTTTGGGTGAAGTCCGAGCT
GGAAAAGCGTATCGCAGGGTTGAGTGCGGCGTCGAACCTGTGAGTGGCTC
ACGTGACCTGCTTTCAATTTCGCTTCAAACCATCCATTGTGGTGCCATCA
GGAGGGGAAACGTTGTTGTGTCGAGATATACTCCGATCCCCGACCCCGTT
GCCACCATTGGCCGTCAACGTTTGTTTGCCGCTCATGTTATTCACGACCA
AGCAGGCTCAGCTCCAAGACCTTCAGCCTTGGCAGCAAGCACATCGACAA
CCACGTGCTCAAAACTGCCGAGCATGTCTTCGACCAACTGCATCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1213206..1213650+

>mRNA_P-fluviatile_contig8.14419.1 ID=mRNA_P-fluviatile_contig8.14419.1|Name=mRNA_P-fluviatile_contig8.14419.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=546bp|location=Sequence derived from alignment at P-fluviatile_contig8:1213206..1213650+ (Porterinema fluviatile SAG_2381)
GTACCACAAGTACTGGTGTCGCTGCTTCTTCCCGACGACTATGACGCTCG
ACATGACAGCGACACAGAGGGTGGAGGGGATGTTCAGTGTGCTGAAGAAG
GGGCGGTTTGTGAACCGCCGCTCTTCTCTGGTTTGGGTGAAGTCCGAGCT
GGAAAAGCGTATCGCAGGGTTGAGTGCGGCGTCGAACCTGTACCACAAGT
ACTGGTGTCGCTGCTTCTTCCCGACGACTATGACGCTCGACATGACAGCG
ACACAGAGGGTGGAGGGGATGTTCAGTGTGCTGAAGAAGGGGCGGTTTGT
GAACCGCCGCTCTTCTCTGGTTTGGGTGAAGTCCGAGCTGGAAAAGCGTA
TCGCAGGGTTGAGTGCGGCGTCGAACCTCTCCAAGACCTTCAGCCTTGGC
AGCAAGCACATCGACAACCACGTGCTCAAAACTGCCGAGCATGTCTTCGA
CCAACTGCATCACTCCAAGACCTTCAGCCTTGGCAGCAAGCACATCGACA
ACCACGTGCTCAAAACTGCCGAGCATGTCTTCGACCAACTGCATCA
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