mRNA_P-fluviatile_contig8.14417.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14417.1
Unique NamemRNA_P-fluviatile_contig8.14417.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 7.710e-59
Identity = 108/165 (65.45%), Postives = 115/165 (69.70%), Query Frame = 1 
Query:    1 AGLRTFNMYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNR------------------------------------YGMHFMLFVGVDSENRTVVFAQGFFS 387
            AGL+ F+MYRLIS+ VKPLQLGEPGRQKV       QRE + TPTDALDL+SELKD AGCYVKYDTD LHRLKHVFWSTGQQQV ARQWGGIVLQDNTALTNR                                    YGMHFMLF+GVDSEN+TVVFAQGFFS
Sbjct:   21 AGLKQFDMYRLISELVKPLQLGEPGRQKV-------QRECWSTPTDALDLVSELKDMAGCYVKYDTDGLHRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLIRLIFATGKMSDEHPVRLRFIQPRAFASRSCRYGMHFMLFIGVDSENKTVVFAQGFFS 178
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.690e-30
Identity = 62/128 (48.44%), Postives = 87/128 (67.97%), Query Frame = 1 
Query:    4 GLRTFNMYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            G+R F MYR I + +KP +LG  G +KVRNM  KV R  + + TDAL+L+++L +     VK+++D  H L+ + W++ +Q + AR +GGIV+QDNT L NRY     LFVGVDSEN+T +FAQG  S
Sbjct:  768 GVRPFTMYRCIGENIKPRKLGTRGVRKVRNMSDKVSRGRWASKTDALELVADL-ERGPATVKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINRYDFKLCLFVGVDSENKTGIFAQGLLS 894
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.750e-29
Identity = 62/122 (50.82%), Postives = 86/122 (70.49%), Query Frame = 1 
Query:   22 MYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            MYR I++ +KP +LG  G +KVRNM  KV  EL+ +  DAL+L++EL +     VK++ D  + L+ + W++ +Q + AR +GG+V+QDNT LTNRY     LFVGVDSEN+T VFAQGFFS
Sbjct:    1 MYRCIAESIKPQKLGPRGARKVRNMSRKVTGELWASSGDALELVAEL-ERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNNKLCLFVGVDSENKTQVFAQGFFS 121
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: UPI001C720B58 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C720B58)

HSP 1 Score: 66.2 bits (160), Expect = 3.150e-10
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:    1 AGLRTF-NMYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDL-ISELKDTAGCYVKY-DTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            AG+R   N Y L+ D      L    +   RN + K +       +DAL++    ++D    +V Y D D+  RL++VFW+    + +   +G +VL+D T LTNRYGM F  FVGV+   ++++F  G  S
Sbjct:  175 AGIRMHKNFYSLVVDAGGYENLAFQEKD-CRNYIDKARFLKLGRGSDALNVYFKRMRDQNDGFVSYMDVDDDERLRNVFWADVPSRTAYEYFGDVVLKDTTYLTNRYGMPFAPFVGVNHHGQSILFGAGLLS 305
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: A0A2I4FHD7_JUGRE (Protein FAR1-RELATED SEQUENCE n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4FHD7_JUGRE)

HSP 1 Score: 65.9 bits (159), Expect = 5.140e-10
Identity = 37/116 (31.90%), Postives = 57/116 (49.14%), Query Frame = 1 
Query:   40 DRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            D+ + L+LG+ G   +R    ++Q +                   G Y   D D+  RLK+VFW+ G+ + +   +G +V  D T LTNRYGM F  FVGV+   +++ F  G  S
Sbjct:   30 DKARVLRLGKGGADALRQYFERMQYK-----------------NDGFYSSMDIDDEGRLKNVFWADGRSRAAYGYFGDVVTFDTTYLTNRYGMSFAPFVGVNHHGQSIFFGAGLIS 128
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: UPI001C71A331 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71A331)

HSP 1 Score: 65.9 bits (159), Expect = 5.340e-10
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 1 
Query:   40 DRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            D+ + L+LG+ G +  R   A++Q +                   G +   D D+  RLK+VFW+  + + + + WG +V  D T LTNRYGM F  FVGV+   ++++   G  S
Sbjct:  324 DKARHLRLGKGGAEAHRQYFARMQYK-----------------NDGFFSDIDHDDDGRLKNVFWANARSRAAYKYWGDVVTFDTTYLTNRYGMPFAPFVGVNHHGQSILLGAGLIS 422
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: UPI001C71BFED (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71BFED)

HSP 1 Score: 65.9 bits (159), Expect = 5.820e-10
Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = 1 
Query:   40 DRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            D+V+ L+LG  G   +R+  A++Q +                   G +   D D+  RLK+VFW+  + + + + +G +V  D T LTNRYGM F  FVGV+   ++++F  G  S
Sbjct:  362 DKVRHLRLGAGGAGALRDYFARMQYK-----------------NPGFFALIDLDDDGRLKNVFWADPRSRAAYQDFGDVVTFDTTYLTNRYGMPFAPFVGVNHHGKSILFGAGLIS 460
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: UPI001C717DE7 (protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C717DE7)

HSP 1 Score: 65.5 bits (158), Expect = 6.720e-10
Identity = 38/121 (31.40%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:   25 YRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            YR   D+ + L+LG  G   +R+  A++Q +                   G +   D D+  RLK+VFW+  + + + + +G +V  D T LTNRYGM F  FVGV+   ++++F  G  S
Sbjct:  267 YRNYIDKARYLRLGAGGAGALRDYFARMQYK-----------------NPGFFALMDLDDDGRLKNVFWADPRSRAAYQDFGDVVTFDTTYLTNRYGMPFAPFVGVNHHRQSILFGAGLIS 370
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BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: UPI001B7F65BE (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7F65BE)

HSP 1 Score: 63.9 bits (154), Expect = 1.220e-9
Identity = 37/116 (31.90%), Postives = 58/116 (50.00%), Query Frame = 1 
Query:   40 DRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            D+ K LQLG+ G   ++    ++Q +                   G +   D D+  RLK+VFW+  + + S + +G +V  D T LTNRYGM F LFVGV+   ++++   G  S
Sbjct:   48 DKTKHLQLGKGGTGALQEYFLRMQYK-----------------NLGFFALMDLDDDGRLKNVFWADPRSRASYQYFGDVVTFDTTYLTNRYGMSFALFVGVNHHIQSILLGAGLIS 146
[Close]
BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Match: A0A833Y384_JUGRE (Protein FAR1-RELATED SEQUENCE n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833Y384_JUGRE)

HSP 1 Score: 62.4 bits (150), Expect = 4.510e-9
Identity = 36/116 (31.03%), Postives = 56/116 (48.28%), Query Frame = 1 
Query:   40 DRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDTAGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMHFMLFVGVDSENRTVVFAQGFFS 387
            D+ + L+LG+ G   +R    ++Q +                   G Y   D D+  RLK+VFW+  + + +   +G +V  D T LTNRYGM F  FVGV+   +++V   G  S
Sbjct:   30 DKTRHLRLGKGGADALRGYFERMQYK-----------------NDGFYSSMDLDDDGRLKNVFWADARSRAAYDYFGDVVKFDTTYLTNRYGMPFASFVGVNHHGQSIVLGAGLIS 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE7.710e-5965.45SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE2.690e-3048.44SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI1.750e-2950.82Putative far-red impaired response protein n=1 Tax... [more]
UPI001C720B583.150e-1033.33protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya... [more]
A0A2I4FHD7_JUGRE5.140e-1031.90Protein FAR1-RELATED SEQUENCE n=1 Tax=Juglans regi... [more]
UPI001C71A3315.340e-1031.03protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya... [more]
UPI001C71BFED5.820e-1031.90protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Carya... [more]
UPI001C717DE76.720e-1031.40protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=C... [more]
UPI001B7F65BE1.220e-931.90protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Jugla... [more]
A0A833Y384_JUGRE4.510e-931.03Protein FAR1-RELATED SEQUENCE n=1 Tax=Juglans regi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1211435..1212301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue4e-25
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14417.1prot_P-fluviatile_contig8.14417.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1211456..1212301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817230.6941864-UTR-P-fluviatile_contig8:1211434..12114551622817230.6941864-UTR-P-fluviatile_contig8:1211434..1211455Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1211435..1211455 +
1693571584.5554771-UTR-P-fluviatile_contig8:1211434..12114551693571584.5554771-UTR-P-fluviatile_contig8:1211434..1211455Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1211435..1211455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817230.7045984-CDS-P-fluviatile_contig8:1211455..12115181622817230.7045984-CDS-P-fluviatile_contig8:1211455..1211518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1211456..1211518 +
1693571584.566058-CDS-P-fluviatile_contig8:1211455..12115181693571584.566058-CDS-P-fluviatile_contig8:1211455..1211518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1211456..1211518 +
1622817230.716367-CDS-P-fluviatile_contig8:1211723..12119471622817230.716367-CDS-P-fluviatile_contig8:1211723..1211947Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1211724..1211947 +
1693571584.5760684-CDS-P-fluviatile_contig8:1211723..12119471693571584.5760684-CDS-P-fluviatile_contig8:1211723..1211947Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1211724..1211947 +
1622817230.726168-CDS-P-fluviatile_contig8:1212222..12123011622817230.726168-CDS-P-fluviatile_contig8:1212222..1212301Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1212223..1212301 +
1693571584.5890968-CDS-P-fluviatile_contig8:1212222..12123011693571584.5890968-CDS-P-fluviatile_contig8:1212222..1212301Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1212223..1212301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14417.1

>prot_P-fluviatile_contig8.14417.1 ID=prot_P-fluviatile_contig8.14417.1|Name=mRNA_P-fluviatile_contig8.14417.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=122bp
MYRLISDRVKPLQLGEPGRQKVRNMVAKVQRELFCTPTDALDLISELKDT
AGCYVKYDTDELHRLKHVFWSTGQQQVSARQWGGIVLQDNTALTNRYGMH
FMLFVGVDSENRTVVFAQGFFS
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mRNA from alignment at P-fluviatile_contig8:1211435..1212301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14417.1 ID=mRNA_P-fluviatile_contig8.14417.1|Name=mRNA_P-fluviatile_contig8.14417.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=867bp|location=Sequence derived from alignment at P-fluviatile_contig8:1211435..1212301+ (Porterinema fluviatile SAG_2381)
GCGGGGCTGAGAACGTTTAACATGTACAGGCTGATTTCCGATCGTGTGAA
GCCCCTTCAGCTTGGAGAGCCCGGTCGACAGAAGGTGCGCCAATCGTGTG
ACGTATTCGTACCGTTTGTTCATGGTCGAAGGGGTGTGCTTCCGTGTTTT
CGTGGACGTCGCAAACGGGGGCTTTGACGGAGTACTGCCGGAGAATTGAA
AGTTGTACGTTGTCGCTGCATGTTTTGACATTCTTCGTCTTCCTTCGACA
TGCCGGCGCAACGTTTCTGAACATGGTATTGGGTAATAGGTCAGGAACAT
GGTCGCGAAGGTGCAGCGCGAGCTCTTCTGTACGCCGACCGACGCCCTCG
ATTTGATATCAGAGTTGAAAGACACGGCTGGTTGCTACGTGAAGTATGAC
ACGGACGAGCTGCATCGACTGAAGCACGTCTTTTGGTCGACGGGTCAGCA
GCAAGTCTCCGCCCGCCAGTGGGGCGGAATCGTCCTTCAAGACAACACTG
CTCTGACGAACAGGTGCGCGTTTCCTTGTTTTCTTTCTCGAGCTGACCCG
TCCCCAATACGAAACGCAACGAACCGAAAATCGGTCGTGGTGTAGGCTCG
CGGTGCAAGAAGAGGGAAGAACGACCCATTGGCCTTGGCGTCGTAGCCCC
ATGAAACCAATACACGACTTTTGTCTTTGTTGGTGTTTCGGTGTCGGCAC
CGTCATGACACCACCTATTCGGTGCTGGCAGTACCGCTTCCATAAATTTA
GCGGTACCACTCCTGACCTGCATTCTGACGTTTTGCAGGTATGGCATGCA
TTTCATGCTGTTCGTCGGAGTCGACTCGGAGAACAGAACGGTCGTCTTTG
CGCAGGGGTTCTTCTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1211435..1212301+

>mRNA_P-fluviatile_contig8.14417.1 ID=mRNA_P-fluviatile_contig8.14417.1|Name=mRNA_P-fluviatile_contig8.14417.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=732bp|location=Sequence derived from alignment at P-fluviatile_contig8:1211435..1212301+ (Porterinema fluviatile SAG_2381)
ATGTACAGGCTGATTTCCGATCGTGTGAAGCCCCTTCAGCTTGGAGAGCC
CGGTCGACAGAAGATGTACAGGCTGATTTCCGATCGTGTGAAGCCCCTTC
AGCTTGGAGAGCCCGGTCGACAGAAGGTCAGGAACATGGTCGCGAAGGTG
CAGCGCGAGCTCTTCTGTACGCCGACCGACGCCCTCGATTTGATATCAGA
GTTGAAAGACACGGCTGGTTGCTACGTGAAGTATGACACGGACGAGCTGC
ATCGACTGAAGCACGTCTTTTGGTCGACGGGTCAGCAGCAAGTCTCCGCC
CGCCAGTGGGGCGGAATCGTCCTTCAAGACAACACTGCTCTGACGAACAG
GTCAGGAACATGGTCGCGAAGGTGCAGCGCGAGCTCTTCTGTACGCCGAC
CGACGCCCTCGATTTGATATCAGAGTTGAAAGACACGGCTGGTTGCTACG
TGAAGTATGACACGGACGAGCTGCATCGACTGAAGCACGTCTTTTGGTCG
ACGGGTCAGCAGCAAGTCTCCGCCCGCCAGTGGGGCGGAATCGTCCTTCA
AGACAACACTGCTCTGACGAACAGGTATGGCATGCATTTCATGCTGTTCG
TCGGAGTCGACTCGGAGAACAGAACGGTCGTCTTTGCGCAGGGGTTCTTC
TCCGTATGGCATGCATTTCATGCTGTTCGTCGGAGTCGACTCGGAGAACA
GAACGGTCGTCTTTGCGCAGGGGTTCTTCTCC
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