mRNA_P-fluviatile_contig8.14415.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14415.1
Unique NamemRNA_P-fluviatile_contig8.14415.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1209403..1209802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14415.1prot_P-fluviatile_contig8.14415.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1209414..1209719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.1707644-UTR-P-fluviatile_contig8:1209402..12094131622817218.1707644-UTR-P-fluviatile_contig8:1209402..1209413Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1209403..1209413 +
1693571543.8170304-UTR-P-fluviatile_contig8:1209402..12094131693571543.8170304-UTR-P-fluviatile_contig8:1209402..1209413Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1209403..1209413 +
1622817218.1934848-UTR-P-fluviatile_contig8:1209719..12098021622817218.1934848-UTR-P-fluviatile_contig8:1209719..1209802Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1209720..1209802 +
1693571543.836148-UTR-P-fluviatile_contig8:1209719..12098021693571543.836148-UTR-P-fluviatile_contig8:1209719..1209802Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1209720..1209802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.1827214-CDS-P-fluviatile_contig8:1209413..12097191622817218.1827214-CDS-P-fluviatile_contig8:1209413..1209719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1209414..1209719 +
1693571543.8251343-CDS-P-fluviatile_contig8:1209413..12097191693571543.8251343-CDS-P-fluviatile_contig8:1209413..1209719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1209414..1209719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14415.1

>prot_P-fluviatile_contig8.14415.1 ID=prot_P-fluviatile_contig8.14415.1|Name=mRNA_P-fluviatile_contig8.14415.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
MLPTYRRRQTGSCTRWGPVIIVFLGECSISWRAPCVDLMSKVTGRHSIAV
PDNHGYLHGVNPLLVCVESVHFGEGFGRVQYVRVEIFHRTLRIHSCSPNV
L*
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mRNA from alignment at P-fluviatile_contig8:1209403..1209802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14415.1 ID=mRNA_P-fluviatile_contig8.14415.1|Name=mRNA_P-fluviatile_contig8.14415.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=400bp|location=Sequence derived from alignment at P-fluviatile_contig8:1209403..1209802+ (Porterinema fluviatile SAG_2381)
GAAGTATAAGCATGCTACCCACTTACAGGCGACGGCAGACCGGGAGCTGC
ACACGGTGGGGCCCCGTGATTATTGTTTTTCTCGGCGAGTGCAGTATTTC
TTGGCGCGCGCCATGTGTTGATTTGATGTCAAAGGTTACTGGTCGGCACT
CTATTGCCGTACCTGACAATCACGGATATCTGCATGGTGTGAACCCCCTC
CTGGTTTGTGTGGAATCGGTTCATTTTGGCGAGGGCTTTGGGCGCGTTCA
ATACGTCCGCGTAGAAATTTTTCATCGCACCCTACGCATTCATTCCTGTT
CGCCAAACGTTTTGTAGATGCATCGAGACGCCGGCATTGGAACGACAAGT
GAGGACGATGTCGACCACTACGATGGTGAATTCGAGTACGACTCTGACGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1209403..1209802+

>mRNA_P-fluviatile_contig8.14415.1 ID=mRNA_P-fluviatile_contig8.14415.1|Name=mRNA_P-fluviatile_contig8.14415.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig8:1209403..1209802+ (Porterinema fluviatile SAG_2381)
ATGCTACCCACTTACAGGCGACGGCAGACCGGGAGCTGCACACGGTGGGG
CCCCGTGATTATTGTTTTTCTCGGCGAGTGCAGTATTTCTTGGCGCGCGC
CATGTGTTGATTTGATGTCAAAGGTTACTGGTCGGCACTCTATTGCCGTA
CCTGACAATCACGGATATCTGCATGGTGTGAACCCCCTCCTGGTTTGTGT
GGAATCGGTTCATTTTGGCGAGGGCTTTGGGCGCGTTCAATACGTCCGCG
TAGAAATTTTTCATCGCACCCTACGCATTCATTCCTGTTCGCCAAACGTT
TTGTAGATGCTACCCACTTACAGGCGACGGCAGACCGGGAGCTGCACACG
GTGGGGCCCCGTGATTATTGTTTTTCTCGGCGAGTGCAGTATTTCTTGGC
GCGCGCCATGTGTTGATTTGATGTCAAAGGTTACTGGTCGGCACTCTATT
GCCGTACCTGACAATCACGGATATCTGCATGGTGTGAACCCCCTCCTGGT
TTGTGTGGAATCGGTTCATTTTGGCGAGGGCTTTGGGCGCGTTCAATACG
TCCGCGTAGAAATTTTTCATCGCACCCTACGCATTCATTCCTGTTCGCCA
AACGTTTTGTAG
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